Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004787.1

Orthogroup ID

OG0002570

Physical Location & Seq

Genomic Coordinates Forward (+)

24326 .. 27483

Gene Structure 3158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004787.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgaagtctatacagctgcaccataatttcttaccggagacgatggagccgcaccagtcgccaaaccctagtccggcaagcctccgtgaaacctccaaggagaatgcttctccgccttcagatctcgtctatggagccttggattcgaagccttcgccggcggccaagttgaataaactgttgccgccacggccaccaccattaaatcctctcaaactgaagcttgagatgcttcttgagaactccgtccatggagcctctgatcccggcctccagtttatgatggccaatggaactctaatgcgtgtcctcattcatacagctgttaccaagtatttgtccttcaaagctgtcgatggcggttttgtctataataaaggaaaggttcacagggttccagcaactgacatggaggcacttaaatctccactcatgggtctatttgaaaagcgccgtgcccgcaagttcttcatatatgttcaagattataatgaaagtgatccgaaaacacacgagggaatagactttacgagagtgacaactagagaattgattatgtgcttggatgttaccctttctgaaaatgaattctgtaatgcagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

201

Amino Acids

22.49

Weight (kDa)

8.48

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44100 AT2G44100 AT3G59920
fragaria_vesca	FvH4_1g00070
malus_domestica	MD02G1000900.v1.1 MD15G1141900.v1.1
prunus_persica	Prupe.7G271300_v2.0.a1 Prupe.7G271300_v2.0.a1
pyrus_communis	pycom15g12810 pycom290g00070
rosa_chinensis	RchiOBHm_Chr2g0084291 RchiOBHm_Chr7g0209621 RchiOBHm_Chr7g0234411
rosa_laevigata	RLG00000015607
rosa_multiflora	Rmu_sc0003129.1_g000011 Rmu_sc0004787.1_g000004
rosa_roxburghii	Rroxscaffold_2G00156180 Rroxscaffold_6G00407240
rosa_rugosa	Rorug01G0452500 Rorug01G0452600 Rorug03G0278400 Rorug03G0278500 Rorug03G0278600 Rorug07G0114700
rosa_samantha	Rh2AG000900 Rh2BG000800 Rh2BG264200 Rh2CG000700 Rh2DG000900 Rh6AG218100 Rh7AG248600 Rh7AG381600 Rh7CG264600 Rh7CG401100 Rh7CG461200 Rh7DG254600
rosa_wichuraiana	Rw2G000070 Rw2G022390 Rw2G045720 Rw5G030850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	489
AciI	CCGC	6 cut(s)	50, 113, 161, 185, 360, 460
AclWI	GGATC	2 cut(s)	257, 494
AcoI	YGGCCR	3 cut(s)	162, 191, 285
AcsI	RAATTY	1 cut(s)	587
AcuI	CTGAAG	2 cut(s)	102, 239
AfiI	CCNNNNNNNGG	2 cut(s)	73, 434
AgsI	TTSAA	4 cut(s)	172, 346, 446, 482
AluBI	AGCT	4 cut(s)	16, 223, 323, 350
AluI	AGCT	4 cut(s)	16, 223, 323, 350
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	2 cut(s)	257, 494
AlwNI	CAGNNNCTG	1 cut(s)	404
AoxI	GGCC	4 cut(s)	162, 191, 268, 285
ApeKI	GCWGC	1 cut(s)	16
ApoI	RAATTY	1 cut(s)	587
AspLEI	GCGC	1 cut(s)	453
AsuC2I	CCSGG	1 cut(s)	267
AsuII	TTCGAA	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	460
BalI	TGGCCA	1 cut(s)	287
BarI	GAAGNNNNNNTAC	2 cut(s)	326, 358
BauI	CACGAG	1 cut(s)	512
BbvI	GCAGC	1 cut(s)	3
BccI	CCATC	3 cut(s)	37, 277, 350
BceAI	ACGGC	2 cut(s)	206, 438
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	69, 543
BfoI	RGCGCY	1 cut(s)	454
BglI	GCCNNNNNGGC	1 cut(s)	190
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	4 cut(s)	17, 50, 162, 185
BlsI	GCNGC	4 cut(s)	18, 51, 163, 186
Bme1390I	CCNGG	1 cut(s)	267
BmiI	GGNNCC	4 cut(s)	48, 136, 256, 396
BmrFI	CCNGG	1 cut(s)	267
BmsI	GCATC	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	257
Bpu14I	TTCGAA	1 cut(s)	146
BpuEI	CTTGAG	2 cut(s)	245, 257
BpuMI	CCSGG	1 cut(s)	267
BsaJI	CCNNGG	4 cut(s)	96, 138, 188, 250
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 434
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	2 cut(s)	55, 274
BseDI	CCNNGG	4 cut(s)	96, 138, 188, 250
BseGI	GGATG	1 cut(s)	571
BseLI	CCNNNNNNNGG	2 cut(s)	73, 434
BseNI	ACTGG	2 cut(s)	55, 274
BseSI	GKGCMC	1 cut(s)	460
BseXI	GCAGC	1 cut(s)	3
BshFI	GGCC	4 cut(s)	164, 193, 270, 287
BsiSI	CCGG	4 cut(s)	35, 74, 158, 267
BslI	CCNNNNNNNGG	2 cut(s)	73, 434
BsmAI	GTCTC	1 cut(s)	32
BsmBI	CGTCTC	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	4 cut(s)	164, 193, 270, 287
Bsp119I	TTCGAA	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	3 cut(s)	121, 262, 499
Bsp19I	CCATGG	1 cut(s)	250
BspACI	CCGC	6 cut(s)	50, 113, 161, 185, 360, 460
BspANI	GGCC	4 cut(s)	164, 193, 270, 287
BspLI	GGNNCC	4 cut(s)	48, 136, 256, 396
BspPI	GGATC	2 cut(s)	257, 494
BspT104I	TTCGAA	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	2 cut(s)	55, 274
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	4 cut(s)	96, 138, 188, 250
BssMI	GATC	3 cut(s)	121, 262, 499
BssSI	CACGAG	1 cut(s)	512
BssT1I	CCWWGG	3 cut(s)	96, 138, 250
Bst2BI	CACGAG	1 cut(s)	512
Bst4CI	ACNGT	1 cut(s)	180
BstBI	TTCGAA	1 cut(s)	146
BstC8I	GCNNGC	3 cut(s)	79, 159, 460
BstDSI	CCRYGG	2 cut(s)	188, 250
BstF5I	GGATG	1 cut(s)	571
BstH2I	RGCGCY	1 cut(s)	454
BstHHI	GCGC	1 cut(s)	453
BstKTI	GATC	3 cut(s)	124, 265, 502
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	3 cut(s)	121, 262, 499
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 190, 229, 459
BstSCI	CCNGG	1 cut(s)	265
BstSLI	GKGCMC	1 cut(s)	460
BstV1I	GCAGC	1 cut(s)	3
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	4 cut(s)	164, 193, 270, 287
BtgI	CCRYGG	2 cut(s)	188, 250
BtsCI	GGATG	1 cut(s)	571
Cac8I	GCNNGC	3 cut(s)	79, 159, 460
CaiI	CAGNNNCTG	1 cut(s)	404
CfoI	GCGC	1 cut(s)	453
Cfr10I	RCCGGY	1 cut(s)	157
CviAII	CATG	3 cut(s)	251, 409, 433
DpnI	GATC	3 cut(s)	123, 264, 501
DpnII	GATC	3 cut(s)	121, 262, 499
EaeI	YGGCCR	3 cut(s)	162, 191, 285
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	3 cut(s)	96, 138, 250
Eco57I	CTGAAG	2 cut(s)	102, 239
EcoRI	GAATTC	1 cut(s)	587
EcoT14I	CCWWGG	3 cut(s)	96, 138, 250
ErhI	CCWWGG	3 cut(s)	96, 138, 250
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	3 cut(s)	254, 412, 436
FatI	CATG	3 cut(s)	250, 408, 432
FauI	CCCGC	1 cut(s)	467
Fnu4HI	GCNGC	4 cut(s)	17, 50, 162, 185
FokI	GGATG	1 cut(s)	578
Fsp4HI	GCNGC	4 cut(s)	17, 50, 162, 185
FspBI	CTAG	2 cut(s)	69, 543
GlaI	GCGC	1 cut(s)	452
GluI	GCNGC	4 cut(s)	17, 50, 162, 185
GsuI	CTGGAG	1 cut(s)	257
HaeII	RGCGCY	1 cut(s)	454
HaeIII	GGCC	4 cut(s)	164, 193, 270, 287
HapII	CCGG	4 cut(s)	35, 74, 158, 267
HhaI	GCGC	1 cut(s)	453
Hin1II	CATG	3 cut(s)	254, 412, 436
Hin6I	GCGC	1 cut(s)	451
HinP1I	GCGC	1 cut(s)	451
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	4 cut(s)	35, 74, 158, 267
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	4 cut(s)	121, 262, 504, 580
Hpy188III	TCNNGA	2 cut(s)	236, 482
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	3 cut(s)	126, 162, 352
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4V	TGCA	2 cut(s)	19, 599
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 190, 229, 459
Hsp92II	CATG	3 cut(s)	254, 412, 436
HspAI	GCGC	1 cut(s)	451
KroI	GCCGGC	1 cut(s)	157
KroNI	GCCGGC	1 cut(s)	159
Kzo9I	GATC	3 cut(s)	121, 262, 499
LmnI	GCTCC	3 cut(s)	46, 134, 254
LpnPI	CCDG	8 cut(s)	48, 68, 87, 171, 280, 287, 376, 411
Lsp1109I	GCAGC	1 cut(s)	3
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	2 cut(s)	69, 543
MaeIII	GTNAC	3 cut(s)	325, 535, 568
MalI	GATC	3 cut(s)	123, 264, 501
MboI	GATC	3 cut(s)	121, 262, 499
MboII	GAAGA	1 cut(s)	460
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	460
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	3 cut(s)	25, 548, 587
MluNI	TGGCCA	1 cut(s)	287
MnlI	CCTC	8 cut(s)	92, 103, 219, 268, 281, 320, 406, 508
Mox20I	TGGCCA	1 cut(s)	287
MreI	CGCCGGCG	1 cut(s)	157
MroNI	GCCGGC	1 cut(s)	157
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	2 cut(s)	203, 420
Msp20I	TGGCCA	1 cut(s)	287
MspA1I	CMGCKG	2 cut(s)	16, 323
MspI	CCGG	4 cut(s)	35, 74, 158, 267
MspR9I	CCNGG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	109
MwoI	GCNNNNNNNGC	4 cut(s)	58, 190, 229, 459
NaeI	GCCGGC	1 cut(s)	159
NciI	CCSGG	1 cut(s)	267
NcoI	CCATGG	1 cut(s)	250
NdeII	GATC	3 cut(s)	121, 262, 499
NgoMIV	GCCGGC	1 cut(s)	157
NlaIII	CATG	3 cut(s)	254, 412, 436
NlaIV	GGNNCC	4 cut(s)	48, 136, 256, 396
NmuCI	GTSAC	1 cut(s)	535
NspV	TTCGAA	1 cut(s)	146
PctI	GAATGC	1 cut(s)	109
PdiI	GCCGGC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	4 cut(s)	18, 51, 163, 186
PsiI	TTATAA	1 cut(s)	489
PspN4I	GGNNCC	4 cut(s)	48, 136, 256, 396
PstNI	CAGNNNCTG	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	121
PvuII	CAGCTG	2 cut(s)	16, 323
SaqAI	TTAA	2 cut(s)	203, 420
SatI	GCNGC	4 cut(s)	17, 50, 162, 185
Sau3AI	GATC	3 cut(s)	121, 262, 499
ScrFI	CCNGG	1 cut(s)	267
SduI	GDGCHC	1 cut(s)	460
SetI	ASST	6 cut(s)	18, 95, 225, 325, 352, 387
SfaNI	GCATC	1 cut(s)	219
SfuI	TTCGAA	1 cut(s)	146
SgrAI	CRCCGGYG	1 cut(s)	157
SmlI	CTYRAG	2 cut(s)	224, 236
SmoI	CTYRAG	2 cut(s)	224, 236
Sse9I	AATT	3 cut(s)	25, 548, 587
SsiI	CCGC	6 cut(s)	50, 113, 161, 185, 360, 460
SspMI	CTAG	2 cut(s)	69, 543
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	3 cut(s)	96, 138, 250
TaaI	ACNGT	1 cut(s)	180
TaqI	TCGA	2 cut(s)	146, 354
TasI	AATT	3 cut(s)	25, 548, 587
TauI	GCSGC	3 cut(s)	52, 164, 187
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	2 cut(s)	203, 420
Tru9I	TTAA	2 cut(s)	203, 420
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	5 cut(s)	17, 305, 460, 507, 600
TspGWI	ACGGA	2 cut(s)	74, 235
XapI	RAATTY	1 cut(s)	587
XspI	CTAG	2 cut(s)	69, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.