Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002570

Physical Location & Seq

Genomic Coordinates Forward (+)

72842503 .. 72847943

Gene Structure 5441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G045720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGTCATATGGGAACTGCAGAACACTGATATTTTGCTCTATTGAAGCTGTTCTACTTTGTGAGTTACTATCTTTGTATGCATTAAAAGTTCTACACATGGATAGGAATGACTATTACGGAGGAGAGTGTGCATCACTTAATCTTATTCAGCTCTGGAAGAGGTTCAGGGGAGATGATAAGCCCCCAGCCCAGTTGGGCTCTAGTAGGGATTATAATGTGGACATGGTCCCTAAGTTTATGATGGCCAATGGAACTCTAGTGCGTGTCCTCATTCATACAGATGTTACCAAGTATTTGTCCTTCAAAGCTGTGGATGGTAGTTTTGTCTATAATAAAGGAAAGGTTCACAAGGTTCCAGCAAATGATATGGAGGCACTTAAATCTCCAATCATGGGTCTATTTGAAAAGCGCCGTCTTTATGTGGAATCTATTGCACGTTTTCAAGGAGGATCTCCATACATTTATCCTTTGTATGGACTAGGAGAGCTTCCTCAGGCATTTGCACGACTTAGTGCGGTTTATGGTGGTACTTATATGCTTAATAAACCTGAACGCAAGGTGGAGTTCAATGAGGAAGGGAAAGTTATTGGTGTCACATCTGAAGGTGAAACTGCCAAGTGCACTAAAGTTGTCTGTGACCCTTCTTACTTACCCAACAAGGTCAGAAAGGTTGGTAAGGTTGCAAGGGCTATAGCCATAATGAGCCACCCAATTCCAAACACAAATGATTCTCATTCAGTGCAGGTTATCCTGCCACAAAAGCAGCTGGGTCACAGATCAGATATTTATAACATATACCTGTTGTCTGTATGTTTATCACACAACTGTGTTCCACCGTTGTCTGATTTTTCATCAGACAACGACTCACTCTACAACGATAACTCTCGTGCTTCGACGATCGACAATTTCATGAAGTACTGGCAGTCTGCTTCTCAGAACACAGGGCCAAACTTGAAGACGACGATAACAAGCAAAAGTAATGACTTAGTGAATAAGTCTGCTACATTATCCTCTTATCGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

341

Amino Acids

38.13

Weight (kDa)

9.01

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDI	PF00996	14 - 138	9.3e-60	GDP dissociation inhibitor
GDI	PF00996	138 - 275	2e-64	GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44100 AT2G44100 AT3G59920
fragaria_vesca	FvH4_1g00070
malus_domestica	MD02G1000900.v1.1 MD15G1141900.v1.1
prunus_persica	Prupe.7G271300_v2.0.a1 Prupe.7G271300_v2.0.a1
pyrus_communis	pycom15g12810 pycom290g00070
rosa_chinensis	RchiOBHm_Chr2g0084291 RchiOBHm_Chr7g0209621 RchiOBHm_Chr7g0234411
rosa_laevigata	RLG00000015607
rosa_multiflora	Rmu_sc0003129.1_g000011 Rmu_sc0004787.1_g000004
rosa_roxburghii	Rroxscaffold_2G00156180 Rroxscaffold_6G00407240
rosa_rugosa	Rorug01G0452500 Rorug01G0452600 Rorug03G0278400 Rorug03G0278500 Rorug03G0278600 Rorug07G0114700
rosa_samantha	Rh2AG000900 Rh2BG000800 Rh2BG264200 Rh2CG000700 Rh2DG000900 Rh6AG218100 Rh7AG248600 Rh7AG381600 Rh7CG264600 Rh7CG401100 Rh7CG461200 Rh7DG254600
rosa_wichuraiana	Rw2G000070 Rw2G022390 Rw2G045720 Rw5G030850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	213, 789
Acc36I	ACCTGC	1 cut(s)	733
AciI	CCGC	1 cut(s)	515
AclWI	GGATC	1 cut(s)	457
AcoI	YGGCCR	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	621
AfaI	GTAC	2 cut(s)	529, 917
AfiI	CCNNNNNNNGG	3 cut(s)	392, 473, 1017
AgsI	TTSAA	6 cut(s)	44, 304, 404, 443, 568, 955
AleI	CACNNNNGTG	1 cut(s)	825
AluBI	AGCT	5 cut(s)	47, 151, 308, 487, 766
AluI	AGCT	5 cut(s)	47, 151, 308, 487, 766
Alw21I	GWGCWC	1 cut(s)	623
Alw44I	GTGCAC	1 cut(s)	619
AlwI	GGATC	1 cut(s)	457
AoxI	GGCC	2 cut(s)	243, 944
ApaLI	GTGCAC	1 cut(s)	619
ApeKI	GCWGC	1 cut(s)	763
Asp700I	GAANNNNTTC	2 cut(s)	48, 161
AspLEI	GCGC	1 cut(s)	411
AspS9I	GGNCC	2 cut(s)	226, 944
AsuHPI	GGTGA	1 cut(s)	617
AvaII	GGWCC	1 cut(s)	226
AxyI	CCTNAGG	1 cut(s)	492
BaeGI	GKGCMC	1 cut(s)	623
BalI	TGGCCA	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	200
BarI	GAAGNNNNNNTAC	4 cut(s)	36, 68, 284, 316
BauI	CACGAG	1 cut(s)	885
BbsI	GAAGAC	1 cut(s)	962
Bbv12I	GWGCWC	1 cut(s)	623
BbvI	GCAGC	1 cut(s)	775
BccI	CCATC	2 cut(s)	235, 308
BceAI	ACGGC	1 cut(s)	396
BfaI	CTAG	3 cut(s)	201, 257, 479
BfmI	CTRYAG	2 cut(s)	16, 690
BfoI	RGCGCY	1 cut(s)	412
BfuAI	ACCTGC	1 cut(s)	733
BisI	GCNGC	1 cut(s)	764
BlsI	GCNGC	1 cut(s)	765
BmcAI	AGTACT	1 cut(s)	917
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	2 cut(s)	226, 944
BmiI	GGNNCC	2 cut(s)	228, 354
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	962
Bsc4I	CCNNNNNNNGG	3 cut(s)	392, 473, 1017
Bse1I	ACTGG	2 cut(s)	190, 923
Bse21I	CCTNAGG	1 cut(s)	492
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	3 cut(s)	392, 473, 1017
BseMII	CTCAG	2 cut(s)	506, 947
BseNI	ACTGG	2 cut(s)	190, 923
BseRI	GAGGAG	1 cut(s)	135
BseSI	GKGCMC	1 cut(s)	623
BseXI	GCAGC	1 cut(s)	775
BseYI	CCCAGC	2 cut(s)	184, 766
BsgI	GTGCAG	1 cut(s)	761
Bsh1285I	CGRYCG	1 cut(s)	900
BshFI	GGCC	2 cut(s)	245, 946
BsiEI	CGRYCG	1 cut(s)	900
BsiHKAI	GWGCWC	1 cut(s)	623
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	3 cut(s)	392, 473, 1017
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	2 cut(s)	245, 946
Bsp1286I	GDGCHC	2 cut(s)	200, 623
Bsp143I	GATC	3 cut(s)	449, 776, 897
BspACI	CCGC	1 cut(s)	515
BspANI	GGCC	2 cut(s)	245, 946
BspCNI	CTCAG	2 cut(s)	505, 946
BspHI	TCATGA	1 cut(s)	909
BspLI	GGNNCC	2 cut(s)	228, 354
BspMAI	CTGCAG	1 cut(s)	20
BspMI	ACCTGC	1 cut(s)	733
BspPI	GGATC	1 cut(s)	457
BsrI	ACTGG	2 cut(s)	190, 923
BssMI	GATC	3 cut(s)	449, 776, 897
BssSI	CACGAG	1 cut(s)	885
Bst2BI	CACGAG	1 cut(s)	885
Bst4CI	ACNGT	2 cut(s)	827, 837
Bst6I	CTCTTC	1 cut(s)	152
BstDEI	CTNAG	5 cut(s)	231, 492, 509, 933, 985
BstF5I	GGATG	1 cut(s)	319
BstH2I	RGCGCY	1 cut(s)	412
BstHHI	GCGC	1 cut(s)	411
BstKTI	GATC	3 cut(s)	452, 779, 900
BstMBI	GATC	3 cut(s)	449, 776, 897
BstMCI	CGRYCG	1 cut(s)	900
BstMWI	GCNNNNNNNGC	1 cut(s)	760
BstSFI	CTRYAG	2 cut(s)	16, 690
BstSLI	GKGCMC	1 cut(s)	623
BstV1I	GCAGC	1 cut(s)	775
BstV2I	GAAGAC	1 cut(s)	962
BstX2I	RGATCY	1 cut(s)	449
BstYI	RGATCY	1 cut(s)	449
Bsu36I	CCTNAGG	1 cut(s)	492
BsuRI	GGCC	2 cut(s)	245, 946
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	2 cut(s)	23, 744
BveI	ACCTGC	1 cut(s)	733
CciI	TCATGA	1 cut(s)	909
CfoI	GCGC	1 cut(s)	411
Cfr13I	GGNCC	2 cut(s)	226, 944
Csp6I	GTAC	2 cut(s)	528, 916
CviAII	CATG	4 cut(s)	97, 223, 391, 910
CviQI	GTAC	2 cut(s)	528, 916
DdeI	CTNAG	5 cut(s)	231, 492, 509, 933, 985
DpnI	GATC	3 cut(s)	451, 778, 899
DpnII	GATC	3 cut(s)	449, 776, 897
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	621
Eco81I	CCTNAGG	1 cut(s)	492
EcoT22I	ATGCAT	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	200
FaeI	CATG	4 cut(s)	100, 226, 394, 913
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	4 cut(s)	96, 222, 390, 909
FauNDI	CATATG	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	764
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	764
FspBI	CTAG	3 cut(s)	201, 257, 479
GlaI	GCGC	1 cut(s)	410
GluI	GCNGC	1 cut(s)	764
GsaI	CCCAGC	2 cut(s)	188, 770
HaeII	RGCGCY	1 cut(s)	412
HaeIII	GGCC	2 cut(s)	245, 946
HhaI	GCGC	1 cut(s)	411
Hin1II	CATG	4 cut(s)	100, 226, 394, 913
Hin6I	GCGC	1 cut(s)	409
HinP1I	GCGC	1 cut(s)	409
HinfI	GANTC	3 cut(s)	425, 728, 863
HphI	GGTGA	1 cut(s)	617
Hpy166II	GTNNAC	3 cut(s)	220, 346, 621
Hpy188I	TCNGA	7 cut(s)	601, 665, 781, 844, 856, 936, 1020
Hpy188III	TCNNGA	2 cut(s)	154, 910
Hpy8I	GTNNAC	3 cut(s)	220, 346, 621
Hpy99I	CGWCG	2 cut(s)	898, 964
HpyAV	CCTTC	4 cut(s)	310, 569, 596, 651
HpyCH4III	ACNGT	2 cut(s)	827, 837
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	8 cut(s)	18, 80, 131, 434, 503, 621, 683, 742
HpyF10VI	GCNNNNNNNGC	1 cut(s)	760
HpyF3I	CTNAG	5 cut(s)	231, 492, 509, 933, 985
HpySE526I	ACGT	1 cut(s)	436
Hsp92II	CATG	4 cut(s)	100, 226, 394, 913
HspAI	GCGC	1 cut(s)	409
Kzo9I	GATC	3 cut(s)	449, 776, 897
Lsp1109I	GCAGC	1 cut(s)	775
LweI	GCATC	1 cut(s)	140
MaeI	CTAG	3 cut(s)	201, 257, 479
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	5 cut(s)	63, 283, 592, 635, 770
MalI	GATC	3 cut(s)	451, 778, 899
MboI	GATC	3 cut(s)	449, 776, 897
MboII	GAAGA	2 cut(s)	169, 967
MflI	RGATCY	1 cut(s)	449
MhlI	GDGCHC	2 cut(s)	200, 623
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	2 cut(s)	711, 904
MluNI	TGGCCA	1 cut(s)	245
MlyI	GAGTC	1 cut(s)	857
MnlI	CCTC	8 cut(s)	113, 153, 278, 364, 440, 501, 565, 1021
Mox20I	TGGCCA	1 cut(s)	245
Mph1103I	ATGCAT	1 cut(s)	82
MroXI	GAANNNNTTC	2 cut(s)	48, 161
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	4 cut(s)	83, 138, 378, 540
MslI	CAYNNNNRTG	2 cut(s)	279, 825
Msp20I	TGGCCA	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	766
MwoI	GCNNNNNNNGC	1 cut(s)	760
NdeI	CATATG	1 cut(s)	7
NdeII	GATC	3 cut(s)	449, 776, 897
NlaIII	CATG	4 cut(s)	100, 226, 394, 913
NlaIV	GGNNCC	2 cut(s)	228, 354
NmuCI	GTSAC	3 cut(s)	592, 635, 770
NsiI	ATGCAT	1 cut(s)	82
OliI	CACNNNNGTG	1 cut(s)	825
PagI	TCATGA	1 cut(s)	909
PdmI	GAANNNNTTC	2 cut(s)	48, 161
PfeI	GAWTC	2 cut(s)	425, 728
PflFI	GACNNNGTC	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	765
Ple19I	CGATCG	1 cut(s)	900
PleI	GAGTC	1 cut(s)	857
PpsI	GAGTC	1 cut(s)	857
PsiI	TTATAA	2 cut(s)	213, 789
PspFI	CCCAGC	2 cut(s)	184, 766
PspN4I	GGNNCC	2 cut(s)	228, 354
PspPI	GGNCC	2 cut(s)	226, 944
PstI	CTGCAG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	449
PsyI	GACNNNGTC	1 cut(s)	224
PvuI	CGATCG	1 cut(s)	900
PvuII	CAGCTG	1 cut(s)	766
RsaI	GTAC	2 cut(s)	529, 917
RsaNI	GTAC	2 cut(s)	528, 916
RseI	CAYNNNNRTG	2 cut(s)	279, 825
SaqAI	TTAA	4 cut(s)	83, 138, 378, 540
SatI	GCNGC	1 cut(s)	764
Sau3AI	GATC	3 cut(s)	449, 776, 897
Sau96I	GGNCC	2 cut(s)	226, 944
ScaI	AGTACT	1 cut(s)	917
SchI	GAGTC	1 cut(s)	857
SduI	GDGCHC	2 cut(s)	200, 623
SfaNI	GCATC	1 cut(s)	140
SfcI	CTRYAG	2 cut(s)	16, 690
SinI	GGWCC	1 cut(s)	226
SmiMI	CAYNNNNRTG	2 cut(s)	279, 825
Sse9I	AATT	2 cut(s)	711, 904
SsiI	CCGC	1 cut(s)	515
SspMI	CTAG	3 cut(s)	201, 257, 479
TaaI	ACNGT	2 cut(s)	827, 837
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	2 cut(s)	893, 900
TasI	AATT	2 cut(s)	711, 904
TatI	WGTACW	1 cut(s)	915
TfiI	GAWTC	2 cut(s)	425, 728
Tru1I	TTAA	4 cut(s)	83, 138, 378, 540
Tru9I	TTAA	4 cut(s)	83, 138, 378, 540
TscAI	CASTG	2 cut(s)	30, 744
TseFI	GTSAC	3 cut(s)	592, 635, 770
TseI	GCWGC	1 cut(s)	763
Tsp45I	GTSAC	3 cut(s)	592, 635, 770
TspDTI	ATGAA	4 cut(s)	263, 840, 898, 926
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	2 cut(s)	30, 744
Tth111I	GACNNNGTC	1 cut(s)	224
VneI	GTGCAC	1 cut(s)	619
VpaK11BI	GGWCC	1 cut(s)	226
XmnI	GAANNNNTTC	2 cut(s)	48, 161
XspI	CTAG	3 cut(s)	201, 257, 479
ZrmI	AGTACT	1 cut(s)	917
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.