Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002570

Physical Location & Seq

Genomic Coordinates Reverse (-)

27592106 .. 27593019

Gene Structure 914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0278400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGATGATGAACAAGGGGGCGGGAAAACCGGTAGGGGCTCAGCTTCTTGACTCGGCCTATGTTTCTCTTGGGCAGGCGGGTCTTGCAGTGTTGCAGGTTGATCAGTGGTTTTTGGTGGGTAGGATACTCGGCCCCATGGCAAAGTATCCAAGGAACACTATGTTGGTTCTGGGGGCGTATGAAAGGATTGGATCGGTGGCTGAGATCCCATTGAACCTAGTGGAGACATGGATGGCAATTAAAGGGCTGCCGGTGGGTCTGCGTAACAAGGCAACTCTAAACTTAATTGGATCTACTATACGTCAGGTTATAAAACTCGACAACACCGCTTTGTTCCGGAAGGAAGGAGAACAAAGGATCCGTCTGGTCCTTGATGTTCGAAGAATTGTTGAGTTCTCACTGGTGGTGGAGAAAGATGCTCTCATGGCGCAGATGCAGGCGGCGGTTATGGCGGGGCTGTCTTTGGCTGATGACACTCATCAGACTGATGCGACTCCAAAGCAGAATGATTTGGTGGTGATGCCTTTGCTTGAGTCAGATTCGACTGGGATTGAAGGTGCTTTGCCTGTAATGGAGAAAGTCAGGTCATCGCCGCCGTTGTCGGCGCTAGAAGCAGGTGAACACCAGGCAGGTTTGTTTGCAGGATTCAATTTGGCTACTTTCTTGGAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

224

Amino Acids

24.18

Weight (kDa)

5.76

Isoelectric Point (pI)

30.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44100 AT2G44100 AT3G59920
fragaria_vesca	FvH4_1g00070
malus_domestica	MD02G1000900.v1.1 MD15G1141900.v1.1
prunus_persica	Prupe.7G271300_v2.0.a1 Prupe.7G271300_v2.0.a1
pyrus_communis	pycom15g12810 pycom290g00070
rosa_chinensis	RchiOBHm_Chr2g0084291 RchiOBHm_Chr7g0209621 RchiOBHm_Chr7g0234411
rosa_laevigata	RLG00000015607
rosa_multiflora	Rmu_sc0003129.1_g000011 Rmu_sc0004787.1_g000004
rosa_roxburghii	Rroxscaffold_2G00156180 Rroxscaffold_6G00407240
rosa_rugosa	Rorug01G0452500 Rorug01G0452600 Rorug03G0278400 Rorug03G0278500 Rorug03G0278600 Rorug07G0114700
rosa_samantha	Rh2AG000900 Rh2BG000800 Rh2BG264200 Rh2CG000700 Rh2DG000900 Rh6AG218100 Rh7AG248600 Rh7AG381600 Rh7CG264600 Rh7CG401100 Rh7CG461200 Rh7DG254600
rosa_wichuraiana	Rw2G000070 Rw2G022390 Rw2G045720 Rw5G030850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
AarI	CACCTGC	1 cut(s)	605
Acc36I	ACCTGC	3 cut(s)	85, 605, 620
AccIII	TCCGGA	1 cut(s)	336
AciI	CCGC	7 cut(s)	20, 77, 327, 440, 443, 452, 593
AclWI	GGATC	5 cut(s)	199, 199, 298, 352, 365
AgeI	ACCGGT	1 cut(s)	28
AgsI	TTSAA	3 cut(s)	214, 554, 649
AjnI	CCWGG	1 cut(s)	624
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AloI	GAACNNNNNNTCC	2 cut(s)	342, 374
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	218
AlwI	GGATC	5 cut(s)	199, 199, 298, 352, 365
Aor13HI	TCCGGA	1 cut(s)	336
AoxI	GGCC	2 cut(s)	54, 130
ApeKI	GCWGC	1 cut(s)	247
ArsI	GACNNNNNNTTYG	2 cut(s)	346, 378
AsiGI	ACCGGT	1 cut(s)	28
AspLEI	GCGC	2 cut(s)	430, 607
AspS9I	GGNCC	2 cut(s)	131, 367
AsuHPI	GGTGA	2 cut(s)	529, 629
AsuII	TTCGAA	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	367
BamHI	GGATCC	1 cut(s)	357
BanII	GRGCYC	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	1 cut(s)	226
BceAI	ACGGC	1 cut(s)	580
BciT130I	CCWGG	1 cut(s)	626
BciVI	GTATCC	2 cut(s)	117, 156
BclI	TGATCA	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	218
BfaI	CTAG	2 cut(s)	218, 608
BfoI	RGCGCY	1 cut(s)	608
BfuAI	ACCTGC	3 cut(s)	85, 605, 620
BfuI	GTATCC	2 cut(s)	117, 156
BisI	GCNGC	3 cut(s)	248, 441, 593
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	3 cut(s)	249, 442, 594
Bme1390I	CCNGG	1 cut(s)	626
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	2 cut(s)	131, 367
BmiI	GGNNCC	2 cut(s)	133, 359
BmrFI	CCNGG	1 cut(s)	626
BmrI	ACTGGG	1 cut(s)	555
BmsI	GCATC	4 cut(s)	406, 423, 478, 510
BmuI	ACTGGG	1 cut(s)	555
Bpu1102I	GCTNAGC	1 cut(s)	39
Bpu14I	TTCGAA	1 cut(s)	379
BpuEI	CTTGAG	1 cut(s)	551
BsaJI	CCNNGG	2 cut(s)	135, 149
BsaWI	WCCGGW	2 cut(s)	28, 336
Bse118I	RCCGGY	2 cut(s)	28, 250
Bse1I	ACTGG	2 cut(s)	405, 550
BseAI	TCCGGA	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	626
BseDI	CCNNGG	2 cut(s)	135, 149
BseGI	GGATG	1 cut(s)	237
BseMII	CTCAG	2 cut(s)	53, 192
BseNI	ACTGG	2 cut(s)	405, 550
BseXI	GCAGC	1 cut(s)	234
BshFI	GGCC	2 cut(s)	56, 132
BshTI	ACCGGT	1 cut(s)	28
BsiSI	CCGG	3 cut(s)	29, 251, 337
BsmAI	GTCTC	1 cut(s)	218
BsnI	GGCC	2 cut(s)	56, 132
Bsp119I	TTCGAA	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp13I	TCCGGA	1 cut(s)	336
Bsp143I	GATC	5 cut(s)	100, 191, 204, 290, 357
Bsp1720I	GCTNAGC	1 cut(s)	39
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	7 cut(s)	20, 77, 327, 440, 443, 452, 593
BspANI	GGCC	2 cut(s)	56, 132
BspCNI	CTCAG	2 cut(s)	52, 193
BspEI	TCCGGA	1 cut(s)	336
BspLI	GGNNCC	2 cut(s)	133, 359
BspMI	ACCTGC	3 cut(s)	85, 605, 620
BspPI	GGATC	5 cut(s)	199, 199, 298, 352, 365
BspT104I	TTCGAA	1 cut(s)	379
BsrFI	RCCGGY	2 cut(s)	28, 250
BsrI	ACTGG	2 cut(s)	405, 550
BssAI	RCCGGY	2 cut(s)	28, 250
BssECI	CCNNGG	2 cut(s)	135, 149
BssMI	GATC	5 cut(s)	100, 191, 204, 290, 357
BssT1I	CCWWGG	2 cut(s)	135, 149
Bst2UI	CCWGG	1 cut(s)	626
BstBI	TTCGAA	1 cut(s)	379
BstC8I	GCNNGC	2 cut(s)	75, 438
BstDEI	CTNAG	2 cut(s)	39, 201
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	237
BstH2I	RGCGCY	1 cut(s)	608
BstHHI	GCGC	2 cut(s)	430, 607
BstKTI	GATC	5 cut(s)	103, 194, 207, 293, 360
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	5 cut(s)	100, 191, 204, 290, 357
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 425, 449, 611
BstNI	CCWGG	1 cut(s)	626
BstSCI	CCNGG	1 cut(s)	624
BstV1I	GCAGC	1 cut(s)	234
BstX2I	RGATCY	3 cut(s)	204, 290, 357
BstYI	RGATCY	3 cut(s)	204, 290, 357
BsuI	GTATCC	2 cut(s)	117, 156
BsuRI	GGCC	2 cut(s)	56, 132
BtgI	CCRYGG	1 cut(s)	135
BtgZI	GCGATG	1 cut(s)	573
BtsCI	GGATG	1 cut(s)	237
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	3 cut(s)	93, 110, 398
BveI	ACCTGC	3 cut(s)	85, 605, 620
Cac8I	GCNNGC	2 cut(s)	75, 438
CfoI	GCGC	2 cut(s)	430, 607
Cfr10I	RCCGGY	2 cut(s)	28, 250
Cfr13I	GGNCC	2 cut(s)	131, 367
CspAI	ACCGGT	1 cut(s)	28
CviAII	CATG	3 cut(s)	136, 228, 424
CviJI	RGCY	9 cut(s)	38, 43, 56, 132, 200, 247, 457, 467, 656
CviKI_1	RGCY	9 cut(s)	38, 43, 56, 132, 200, 247, 457, 467, 656
DdeI	CTNAG	2 cut(s)	39, 201
DpnI	GATC	5 cut(s)	102, 193, 206, 292, 359
DpnII	GATC	5 cut(s)	100, 191, 204, 290, 357
Eco130I	CCWWGG	2 cut(s)	135, 149
Eco24I	GRGCYC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	624
EcoT14I	CCWWGG	2 cut(s)	135, 149
EcoT38I	GRGCYC	1 cut(s)	40
ErhI	CCWWGG	2 cut(s)	135, 149
FaeI	CATG	3 cut(s)	139, 231, 427
FaiI	YATR	9 cut(s)	60, 137, 161, 180, 229, 299, 311, 425, 449
FatI	CATG	3 cut(s)	135, 227, 423
FauI	CCCGC	3 cut(s)	13, 70, 445
FbaI	TGATCA	1 cut(s)	100
Fnu4HI	GCNGC	3 cut(s)	248, 441, 593
FokI	GGATG	1 cut(s)	244
FriOI	GRGCYC	1 cut(s)	40
Fsp4HI	GCNGC	3 cut(s)	248, 441, 593
FspBI	CTAG	2 cut(s)	218, 608
GlaI	GCGC	2 cut(s)	429, 606
GluI	GCNGC	3 cut(s)	248, 441, 593
HaeII	RGCGCY	1 cut(s)	608
HaeIII	GGCC	2 cut(s)	56, 132
HapII	CCGG	3 cut(s)	29, 251, 337
HhaI	GCGC	2 cut(s)	430, 607
Hin1II	CATG	3 cut(s)	139, 231, 427
Hin6I	GCGC	2 cut(s)	428, 605
HinP1I	GCGC	2 cut(s)	428, 605
HinfI	GANTC	5 cut(s)	50, 493, 533, 539, 645
HpaII	CCGG	3 cut(s)	29, 251, 337
HphI	GGTGA	2 cut(s)	529, 629
Hpy166II	GTNNAC	1 cut(s)	620
Hpy188I	TCNGA	2 cut(s)	483, 538
Hpy188III	TCNNGA	2 cut(s)	47, 337
Hpy8I	GTNNAC	1 cut(s)	620
HpyAV	CCTTC	3 cut(s)	334, 338, 548
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	4 cut(s)	86, 94, 436, 641
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 425, 449, 611
HpyF3I	CTNAG	2 cut(s)	39, 201
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	3 cut(s)	139, 231, 427
HspAI	GCGC	2 cut(s)	428, 605
Kpn2I	TCCGGA	1 cut(s)	336
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	5 cut(s)	100, 191, 204, 290, 357
Lsp1109I	GCAGC	1 cut(s)	234
LweI	GCATC	4 cut(s)	406, 423, 478, 510
MaeI	CTAG	2 cut(s)	218, 608
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	5 cut(s)	102, 193, 206, 292, 359
MboI	GATC	5 cut(s)	100, 191, 204, 290, 357
MboII	GAAGA	1 cut(s)	393
MflI	RGATCY	3 cut(s)	204, 290, 357
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	4 cut(s)	237, 285, 384, 649
MlyI	GAGTC	3 cut(s)	44, 487, 542
MroI	TCCGGA	1 cut(s)	336
MseI	TTAA	2 cut(s)	240, 284
MspI	CCGG	3 cut(s)	29, 251, 337
MspR9I	CCNGG	1 cut(s)	626
MvaI	CCWGG	1 cut(s)	626
MwoI	GCNNNNNNNGC	4 cut(s)	83, 425, 449, 611
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	5 cut(s)	100, 191, 204, 290, 357
NlaIII	CATG	3 cut(s)	139, 231, 427
NlaIV	GGNNCC	2 cut(s)	133, 359
NmeAIII	GCCGAG	2 cut(s)	32, 108
NspV	TTCGAA	1 cut(s)	379
PaqCI	CACCTGC	1 cut(s)	605
PfeI	GAWTC	2 cut(s)	539, 645
PinAI	ACCGGT	1 cut(s)	28
PkrI	GCNGC	3 cut(s)	249, 442, 594
PleI	GAGTC	3 cut(s)	44, 487, 541
PpsI	GAGTC	3 cut(s)	44, 487, 541
PsiI	TTATAA	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	624
PspGI	CCWGG	1 cut(s)	624
PspN4I	GGNNCC	2 cut(s)	133, 359
PspPI	GGNCC	2 cut(s)	131, 367
PsuI	RGATCY	3 cut(s)	204, 290, 357
SaqAI	TTAA	2 cut(s)	240, 284
SatI	GCNGC	3 cut(s)	248, 441, 593
Sau3AI	GATC	5 cut(s)	100, 191, 204, 290, 357
Sau96I	GGNCC	2 cut(s)	131, 367
SchI	GAGTC	3 cut(s)	44, 487, 542
ScrFI	CCNGG	1 cut(s)	626
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	9 cut(s)	45, 99, 219, 304, 309, 559, 587, 619, 634
SfaNI	GCATC	4 cut(s)	406, 423, 478, 510
SfuI	TTCGAA	1 cut(s)	379
SinI	GGWCC	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
Sse9I	AATT	4 cut(s)	237, 285, 384, 649
SsiI	CCGC	7 cut(s)	20, 77, 327, 440, 443, 452, 593
SspMI	CTAG	2 cut(s)	218, 608
StyD4I	CCNGG	1 cut(s)	624
StyI	CCWWGG	2 cut(s)	135, 149
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	3 cut(s)	318, 379, 542
TasI	AATT	4 cut(s)	237, 285, 384, 649
TauI	GCSGC	2 cut(s)	443, 595
TfiI	GAWTC	2 cut(s)	539, 645
Tru1I	TTAA	2 cut(s)	240, 284
Tru9I	TTAA	2 cut(s)	240, 284
TscAI	CASTG	3 cut(s)	93, 110, 405
TseI	GCWGC	1 cut(s)	247
TspDTI	ATGAA	2 cut(s)	23, 195
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	3 cut(s)	93, 110, 405
VpaK11BI	GGWCC	1 cut(s)	367
XspI	CTAG	2 cut(s)	218, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.