Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002570

Physical Location & Seq

Genomic Coordinates Forward (+)

31644769 .. 31650008

Gene Structure 5240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G022390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTCATATGGGAACTGCAGAACACTTATATTTTGCTCTATTGAAGCTATTCTACTTTGTGAGTTACTATCTTTGTATGCATTAAAAGTTCTACACATGGATAGGAATGACTATTACGGAGGAGAGTGTGCATCACTTAATCTTATTCAGCTCTGGAAGAGGTTCAGGGGAGATGATAAGCCCCCAGCCCAGTTGGGCTCTAGTAGGGATTATAATGTGGACATGGTCCCTAAGTTTATGATGGCCAATGGAACTCTAGTGCGTGTCCTCATTCATACAGATGTTACCAAGTATTTGACCTTCAAAGCTGTGGATGGTAGTTTTGTCTATAATAAAGGAAAGGTTCACAAGGTTCCAGCAAATGATATGGAGGCACTTAAATCTCCACTCATGGGTCTATTTGAAAAGCGCCGTGCCCGCAAGTTCTTCATAGAGATGATCCTTTATGTGGAATCTATTGCACGTTTTCAAGGAGGATCTCCATACATTTATCCTTTGTATGGACTAGGAGAGCTTCCTCAGGCAGTTGCACGACTTAGTGCGGTTTATGGTGGTACTTATATGCTTAATAAACCTGAACGCAAGGTGGAGTTCAATGAGGAAGGGAAAGTTATTGGTGTCACATCTGAAGGTGAAACTGCCAAGTGCACTAAAGTTGTTTGTGACCCTTCTTACTTACCCAACAAGGTCAGAAAGGTTGGTAAGGTTGCAAGGGCTATAGCCATAATGAGCCACCCAATTCCAAACACAAATGATTCTCATTCAGTGCAGGTTATCCTGCCACAAAAGCAGCTGGGTCACAGATCAGATATTTATAACATATACCTGTTGTCTGTATGTTTATCACACAACTGTGTTCCACCGTTGTCTGATTTTTCATCAGACAACGGCTCACTCTACAACGGTGGGACTCCAAATCCCACATCGGTTTTCTGCCGTTGTCTGATGCGATTTTTGGTGTACGGTGTAAAAAAATTAATTCAATCCGCCGTTCTTTCAATATCAAATAAGTGGTTAACCTTATATATACATACTTTTTCACACGGATATCCGTATATCTGTGACTGTTGTTTATGCACATGGATTTCCGTTGATATTGTTATTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

369

Amino Acids

41.42

Weight (kDa)

8.93

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDI	PF00996	15 - 144	3.6e-63	GDP dissociation inhibitor
GDI	PF00996	146 - 284	1.4e-63	GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44100 AT2G44100 AT3G59920
fragaria_vesca	FvH4_1g00070
malus_domestica	MD02G1000900.v1.1 MD15G1141900.v1.1
prunus_persica	Prupe.7G271300_v2.0.a1 Prupe.7G271300_v2.0.a1
pyrus_communis	pycom15g12810 pycom290g00070
rosa_chinensis	RchiOBHm_Chr2g0084291 RchiOBHm_Chr7g0209621 RchiOBHm_Chr7g0234411
rosa_laevigata	RLG00000015607
rosa_multiflora	Rmu_sc0003129.1_g000011 Rmu_sc0004787.1_g000004
rosa_roxburghii	Rroxscaffold_2G00156180 Rroxscaffold_6G00407240
rosa_rugosa	Rorug01G0452500 Rorug01G0452600 Rorug03G0278400 Rorug03G0278500 Rorug03G0278600 Rorug07G0114700
rosa_samantha	Rh2AG000900 Rh2BG000800 Rh2BG264200 Rh2CG000700 Rh2DG000900 Rh6AG218100 Rh7AG248600 Rh7AG381600 Rh7CG264600 Rh7CG401100 Rh7CG461200 Rh7DG254600
rosa_wichuraiana	Rw2G000070 Rw2G022390 Rw2G045720 Rw5G030850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	213, 816
Acc36I	ACCTGC	1 cut(s)	760
AciI	CCGC	3 cut(s)	418, 542, 987
AclWI	GGATC	2 cut(s)	433, 484
AcoI	YGGCCR	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	648
AfaI	GTAC	2 cut(s)	556, 962
AfiI	CCNNNNNNNGG	3 cut(s)	392, 448, 500
AgsI	TTSAA	7 cut(s)	44, 304, 404, 470, 595, 983, 999
AleI	CACNNNNGTG	1 cut(s)	852
AluBI	AGCT	5 cut(s)	47, 151, 308, 514, 793
AluI	AGCT	5 cut(s)	47, 151, 308, 514, 793
Alw21I	GWGCWC	1 cut(s)	650
Alw44I	GTGCAC	1 cut(s)	646
AlwI	GGATC	2 cut(s)	433, 484
AoxI	GGCC	1 cut(s)	243
ApaLI	GTGCAC	1 cut(s)	646
ApeKI	GCWGC	1 cut(s)	790
AseI	ATTAAT	1 cut(s)	977
Asp700I	GAANNNNTTC	2 cut(s)	48, 161
AspLEI	GCGC	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	644
AvaII	GGWCC	1 cut(s)	226
AxyI	CCTNAGG	1 cut(s)	519
BaeGI	GKGCMC	2 cut(s)	418, 650
BalI	TGGCCA	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	200
BarI	GAAGNNNNNNTAC	4 cut(s)	36, 68, 284, 316
Bbv12I	GWGCWC	1 cut(s)	650
BbvI	GCAGC	1 cut(s)	802
BccI	CCATC	2 cut(s)	235, 308
BceAI	ACGGC	4 cut(s)	396, 904, 921, 974
BfaI	CTAG	3 cut(s)	201, 257, 506
BfmI	CTRYAG	2 cut(s)	16, 717
BfoI	RGCGCY	1 cut(s)	412
BfuAI	ACCTGC	1 cut(s)	760
BisI	GCNGC	1 cut(s)	791
BlsI	GCNGC	1 cut(s)	792
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	2 cut(s)	228, 354
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	2 cut(s)	140, 936
BmuI	ACTGGG	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	3 cut(s)	392, 448, 500
Bse1I	ACTGG	1 cut(s)	190
Bse21I	CCTNAGG	1 cut(s)	519
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	3 cut(s)	392, 448, 500
BseMII	CTCAG	1 cut(s)	533
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	135
BseSI	GKGCMC	2 cut(s)	418, 650
BseXI	GCAGC	1 cut(s)	802
BseYI	CCCAGC	2 cut(s)	184, 793
BsgI	GTGCAG	1 cut(s)	788
BshFI	GGCC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	650
BslFI	GGGAC	2 cut(s)	212, 922
BslI	CCNNNNNNNGG	3 cut(s)	392, 448, 500
BsmFI	GGGAC	2 cut(s)	212, 922
BsnI	GGCC	1 cut(s)	245
Bsp1286I	GDGCHC	3 cut(s)	200, 418, 650
Bsp143I	GATC	3 cut(s)	438, 476, 803
BspACI	CCGC	3 cut(s)	418, 542, 987
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	532
BspLI	GGNNCC	2 cut(s)	228, 354
BspMAI	CTGCAG	1 cut(s)	20
BspMI	ACCTGC	1 cut(s)	760
BspPI	GGATC	2 cut(s)	433, 484
BsrI	ACTGG	1 cut(s)	190
BssMI	GATC	3 cut(s)	438, 476, 803
Bst4CI	ACNGT	5 cut(s)	854, 864, 905, 965, 1067
Bst6I	CTCTTC	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	3 cut(s)	231, 519, 536
BstF5I	GGATG	1 cut(s)	319
BstH2I	RGCGCY	1 cut(s)	412
BstHHI	GCGC	1 cut(s)	411
BstKTI	GATC	3 cut(s)	441, 479, 806
BstMBI	GATC	3 cut(s)	438, 476, 803
BstMWI	GCNNNNNNNGC	2 cut(s)	417, 787
BstSFI	CTRYAG	2 cut(s)	16, 717
BstSLI	GKGCMC	2 cut(s)	418, 650
BstV1I	GCAGC	1 cut(s)	802
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
Bsu36I	CCTNAGG	1 cut(s)	519
BsuRI	GGCC	1 cut(s)	245
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	771
BveI	ACCTGC	1 cut(s)	760
Cac8I	GCNNGC	1 cut(s)	418
CfoI	GCGC	1 cut(s)	411
Cfr13I	GGNCC	1 cut(s)	226
Csp6I	GTAC	2 cut(s)	555, 961
CviAII	CATG	4 cut(s)	97, 223, 391, 1080
CviQI	GTAC	2 cut(s)	555, 961
DdeI	CTNAG	3 cut(s)	231, 519, 536
DpnI	GATC	3 cut(s)	440, 478, 805
DpnII	GATC	3 cut(s)	438, 476, 803
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
EciI	GGCGGA	1 cut(s)	976
Eco24I	GRGCYC	1 cut(s)	200
Eco32I	GATATC	1 cut(s)	1049
Eco47I	GGWCC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	648
Eco81I	CCTNAGG	1 cut(s)	519
EcoRV	GATATC	1 cut(s)	1049
EcoT22I	ATGCAT	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	200
FaeI	CATG	4 cut(s)	100, 226, 394, 1083
FaqI	GGGAC	2 cut(s)	212, 922
FatI	CATG	4 cut(s)	96, 222, 390, 1079
FauI	CCCGC	1 cut(s)	425
FauNDI	CATATG	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	791
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	791
FspBI	CTAG	3 cut(s)	201, 257, 506
GlaI	GCGC	1 cut(s)	410
GluI	GCNGC	1 cut(s)	791
GsaI	CCCAGC	2 cut(s)	188, 797
HaeII	RGCGCY	1 cut(s)	412
HaeIII	GGCC	1 cut(s)	245
HhaI	GCGC	1 cut(s)	411
Hin1II	CATG	4 cut(s)	100, 226, 394, 1083
Hin6I	GCGC	1 cut(s)	409
HinP1I	GCGC	1 cut(s)	409
HincII	GTYRAC	1 cut(s)	1017
HindII	GTYRAC	1 cut(s)	1017
HinfI	GANTC	3 cut(s)	452, 755, 910
HpaI	GTTAAC	1 cut(s)	1017
HphI	GGTGA	1 cut(s)	644
Hpy166II	GTNNAC	5 cut(s)	220, 346, 648, 961, 1017
Hpy188I	TCNGA	6 cut(s)	628, 692, 808, 871, 883, 945
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	5 cut(s)	220, 346, 648, 961, 1017
HpyAV	CCTTC	4 cut(s)	310, 596, 623, 678
HpyCH4III	ACNGT	5 cut(s)	854, 864, 905, 965, 1067
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	9 cut(s)	18, 80, 131, 461, 530, 648, 710, 769, 1077
HpyF10VI	GCNNNNNNNGC	2 cut(s)	417, 787
HpyF3I	CTNAG	3 cut(s)	231, 519, 536
HpySE526I	ACGT	1 cut(s)	463
Hsp92II	CATG	4 cut(s)	100, 226, 394, 1083
HspAI	GCGC	1 cut(s)	409
KspAI	GTTAAC	1 cut(s)	1017
Kzo9I	GATC	3 cut(s)	438, 476, 803
Lsp1109I	GCAGC	1 cut(s)	802
LweI	GCATC	2 cut(s)	140, 936
MaeI	CTAG	3 cut(s)	201, 257, 506
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	6 cut(s)	63, 283, 619, 662, 797, 1061
MalI	GATC	3 cut(s)	440, 478, 805
MboI	GATC	3 cut(s)	438, 476, 803
MboII	GAAGA	2 cut(s)	169, 418
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	3 cut(s)	200, 418, 650
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	3 cut(s)	738, 974, 978
MluNI	TGGCCA	1 cut(s)	245
MlyI	GAGTC	1 cut(s)	904
MnlI	CCTC	7 cut(s)	113, 153, 278, 364, 467, 528, 592
Mox20I	TGGCCA	1 cut(s)	245
Mph1103I	ATGCAT	1 cut(s)	82
MroXI	GAANNNNTTC	2 cut(s)	48, 161
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	6 cut(s)	83, 138, 378, 567, 977, 1016
MslI	CAYNNNNRTG	3 cut(s)	279, 434, 852
Msp20I	TGGCCA	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	793
MwoI	GCNNNNNNNGC	2 cut(s)	417, 787
NdeI	CATATG	1 cut(s)	7
NdeII	GATC	3 cut(s)	438, 476, 803
NlaIII	CATG	4 cut(s)	100, 226, 394, 1083
NlaIV	GGNNCC	2 cut(s)	228, 354
NmuCI	GTSAC	4 cut(s)	619, 662, 797, 1061
NsiI	ATGCAT	1 cut(s)	82
OliI	CACNNNNGTG	1 cut(s)	852
PdmI	GAANNNNTTC	2 cut(s)	48, 161
PfeI	GAWTC	2 cut(s)	452, 755
PflFI	GACNNNGTC	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	792
PleI	GAGTC	1 cut(s)	904
PpsI	GAGTC	1 cut(s)	904
PshBI	ATTAAT	1 cut(s)	977
PsiI	TTATAA	2 cut(s)	213, 816
PspFI	CCCAGC	2 cut(s)	184, 793
PspN4I	GGNNCC	2 cut(s)	228, 354
PspPI	GGNCC	1 cut(s)	226
PstI	CTGCAG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	476
PsyI	GACNNNGTC	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	793
RsaI	GTAC	2 cut(s)	556, 962
RsaNI	GTAC	2 cut(s)	555, 961
RseI	CAYNNNNRTG	3 cut(s)	279, 434, 852
SaqAI	TTAA	6 cut(s)	83, 138, 378, 567, 977, 1016
SatI	GCNGC	1 cut(s)	791
Sau3AI	GATC	3 cut(s)	438, 476, 803
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	904
SduI	GDGCHC	3 cut(s)	200, 418, 650
SfaNI	GCATC	2 cut(s)	140, 936
SfcI	CTRYAG	2 cut(s)	16, 717
SinI	GGWCC	1 cut(s)	226
SmiMI	CAYNNNNRTG	3 cut(s)	279, 434, 852
Sse9I	AATT	3 cut(s)	738, 974, 978
SsiI	CCGC	3 cut(s)	418, 542, 987
SspMI	CTAG	3 cut(s)	201, 257, 506
TaaI	ACNGT	5 cut(s)	854, 864, 905, 965, 1067
TaiI	ACGT	1 cut(s)	466
TasI	AATT	3 cut(s)	738, 974, 978
TfiI	GAWTC	2 cut(s)	452, 755
Tru1I	TTAA	6 cut(s)	83, 138, 378, 567, 977, 1016
Tru9I	TTAA	6 cut(s)	83, 138, 378, 567, 977, 1016
TscAI	CASTG	1 cut(s)	771
TseFI	GTSAC	4 cut(s)	619, 662, 797, 1061
TseI	GCWGC	1 cut(s)	790
Tsp45I	GTSAC	4 cut(s)	619, 662, 797, 1061
TspDTI	ATGAA	3 cut(s)	263, 418, 867
TspGWI	ACGGA	4 cut(s)	132, 1041, 1059, 1078
TspRI	CASTG	1 cut(s)	771
Tth111I	GACNNNGTC	1 cut(s)	224
VneI	GTGCAC	1 cut(s)	646
VpaK11BI	GGWCC	1 cut(s)	226
VspI	ATTAAT	1 cut(s)	977
XmnI	GAANNNNTTC	2 cut(s)	48, 161
XspI	CTAG	3 cut(s)	201, 257, 506
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.