Rh7AG248600

Guanosine nucleotide diphosphate dissociation inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002570
Physical Location & Seq
Forward (+)
24639609 .. 24652675
13067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG248600.1

Sequence Viewer

Length: 528 bp
ATGGGAACCACTATCCTGAACAAACAAAGAGATTATGTGGATCATGGTGCTAGGAACTTTTGGATGCATAACACTGGTCCTCTGGGGTGGTTGACTTACAATGTAGCCACATTTGGAACCGACCCATCAAAGCTTGATGAGCAGGGATGTGTTTGTGAGCACAACCAACTGTGGAAGAGGTTCAGGGGAGATGATAAGCCCCAGCACAGTTGGGCTCTATTTATGATGGCCAATGGAACTCTAATGCGTGTCCTCATTCATACAGCTGTTACCAAGTATTTGTCCTTCAAAGCTGTCGATGGCGGTTTTGTCTATAATAAAGGAAAGGTTCACAAGGTTCCAGCAACTGACATGGAGGCACTTAAATCTCCACTCATGGGTCTATTTGAAAAGCGCCATGCCCGCAAGTTCTTCATATATGTTCAAGATTATAATGAAAGTGATCCGAAAACACACGAGGGAATAGACTTTACTAGATTGACAACTAGAGAATTGATTGAGTATGTGCTTGGATGTTACCCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDI

Protein Analysis

175

Amino Acids

20.26

Weight (kDa)

8.71

Isoelectric Point (pI)

32.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 54 - 167 2.7e-42 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
AciI CCGC 2 cut(s) 303, 403
AclWI GGATC 2 cut(s) 48, 437
AcoI YGGCCR 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 377
AgsI TTSAA 3 cut(s) 289, 389, 425
AluBI AGCT 3 cut(s) 133, 266, 293
AluI AGCT 3 cut(s) 133, 266, 293
Alw21I GWGCWC 1 cut(s) 162
AlwI GGATC 2 cut(s) 48, 437
AlwNI CAGNNNCTG 1 cut(s) 347
AoxI GGCC 1 cut(s) 228
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 1 cut(s) 396
AspS9I GGNCC 1 cut(s) 77
AvaII GGWCC 1 cut(s) 77
BalI TGGCCA 1 cut(s) 230
BanII GRGCYC 1 cut(s) 217
BarI GAAGNNNNNNTAC 2 cut(s) 269, 301
BauI CACGAG 1 cut(s) 455
Bbv12I GWGCWC 1 cut(s) 162
BccI CCATC 3 cut(s) 133, 220, 293
BfaI CTAG 3 cut(s) 51, 474, 486
BfoI RGCGCY 1 cut(s) 397
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 3 cut(s) 7, 118, 339
BmsI GCATC 1 cut(s) 54
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse1I ACTGG 1 cut(s) 79
BseGI GGATG 3 cut(s) 69, 152, 518
BseLI CCNNNNNNNGG 1 cut(s) 377
BseNI ACTGG 1 cut(s) 79
BseYI CCCAGC 1 cut(s) 201
BshFI GGCC 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 377
BsnI GGCC 1 cut(s) 230
Bsp1286I GDGCHC 2 cut(s) 162, 217
Bsp143I GATC 2 cut(s) 40, 442
BspACI CCGC 2 cut(s) 303, 403
BspANI GGCC 1 cut(s) 230
BspLI GGNNCC 3 cut(s) 7, 118, 339
BspPI GGATC 2 cut(s) 48, 437
BsrI ACTGG 1 cut(s) 79
BssMI GATC 2 cut(s) 40, 442
BssSI CACGAG 1 cut(s) 455
Bst2BI CACGAG 1 cut(s) 455
Bst4CI ACNGT 2 cut(s) 171, 209
Bst6I CTCTTC 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 403
BstF5I GGATG 3 cut(s) 69, 152, 518
BstH2I RGCGCY 1 cut(s) 397
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 2 cut(s) 43, 445
BstMBI GATC 2 cut(s) 40, 442
BstMWI GCNNNNNNNGC 2 cut(s) 139, 402
BsuRI GGCC 1 cut(s) 230
BtsCI GGATG 3 cut(s) 69, 152, 518
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 403
CaiI CAGNNNCTG 1 cut(s) 347
CfoI GCGC 1 cut(s) 396
Cfr13I GGNCC 1 cut(s) 77
CviAII CATG 4 cut(s) 44, 352, 376, 398
CviJI RGCY 7 cut(s) 107, 133, 199, 215, 230, 266, 293
CviKI_1 RGCY 7 cut(s) 107, 133, 199, 215, 230, 266, 293
DpnI GATC 2 cut(s) 42, 444
DpnII GATC 2 cut(s) 40, 442
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 77
EcoT22I ATGCAT 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 217
FaeI CATG 4 cut(s) 47, 355, 379, 401
FatI CATG 4 cut(s) 43, 351, 375, 397
FauI CCCGC 1 cut(s) 410
FokI GGATG 2 cut(s) 76, 159
FriOI GRGCYC 1 cut(s) 217
FspBI CTAG 3 cut(s) 51, 474, 486
GlaI GCGC 1 cut(s) 395
GsaI CCCAGC 1 cut(s) 205
HaeII RGCGCY 1 cut(s) 397
HaeIII GGCC 1 cut(s) 230
HhaI GCGC 1 cut(s) 396
Hin1II CATG 4 cut(s) 47, 355, 379, 401
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HincII GTYRAC 1 cut(s) 93
HindII GTYRAC 1 cut(s) 93
HindIII AAGCTT 1 cut(s) 131
Hpy166II GTNNAC 2 cut(s) 93, 331
Hpy188I TCNGA 2 cut(s) 447, 527
Hpy188III TCNNGA 2 cut(s) 16, 425
Hpy8I GTNNAC 2 cut(s) 93, 331
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 2 cut(s) 171, 209
HpyCH4V TGCA 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 402
Hsp92II CATG 4 cut(s) 47, 355, 379, 401
HspAI GCGC 1 cut(s) 394
Kzo9I GATC 2 cut(s) 40, 442
LpnPI CCDG 7 cut(s) 29, 60, 68, 128, 169, 215, 354
LweI GCATC 1 cut(s) 54
MaeI CTAG 3 cut(s) 51, 474, 486
MaeIII GTNAC 2 cut(s) 268, 515
MalI GATC 2 cut(s) 42, 444
MboI GATC 2 cut(s) 40, 442
MboII GAAGA 2 cut(s) 187, 403
MhlI GDGCHC 2 cut(s) 162, 217
MlsI TGGCCA 1 cut(s) 230
MluCI AATT 1 cut(s) 491
MluNI TGGCCA 1 cut(s) 230
MnlI CCTC 5 cut(s) 90, 171, 263, 349, 451
Mox20I TGGCCA 1 cut(s) 230
Mph1103I ATGCAT 1 cut(s) 69
MroXI GAANNNNTTC 1 cut(s) 179
MscI TGGCCA 1 cut(s) 230
MseI TTAA 1 cut(s) 363
Msp20I TGGCCA 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 266
MwoI GCNNNNNNNGC 2 cut(s) 139, 402
NdeII GATC 2 cut(s) 40, 442
NlaIII CATG 4 cut(s) 47, 355, 379, 401
NlaIV GGNNCC 3 cut(s) 7, 118, 339
NsiI ATGCAT 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 179
PsiI TTATAA 1 cut(s) 432
PspFI CCCAGC 1 cut(s) 201
PspN4I GGNNCC 3 cut(s) 7, 118, 339
PspPI GGNCC 1 cut(s) 77
PstNI CAGNNNCTG 1 cut(s) 347
PvuII CAGCTG 1 cut(s) 266
SaqAI TTAA 1 cut(s) 363
Sau3AI GATC 2 cut(s) 40, 442
Sau96I GGNCC 1 cut(s) 77
SduI GDGCHC 2 cut(s) 162, 217
SetI ASST 6 cut(s) 135, 182, 268, 295, 330, 339
SfaNI GCATC 1 cut(s) 54
SinI GGWCC 1 cut(s) 77
Sse9I AATT 1 cut(s) 491
SsiI CCGC 2 cut(s) 303, 403
SspMI CTAG 3 cut(s) 51, 474, 486
TaaI ACNGT 2 cut(s) 171, 209
TaqI TCGA 1 cut(s) 297
TasI AATT 1 cut(s) 491
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 1 cut(s) 79
TspDTI ATGAA 3 cut(s) 248, 403, 450
TspRI CASTG 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 77
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 3 cut(s) 51, 474, 486
Zsp2I ATGCAT 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.