RchiOBHm_Chr7g0209621

Guanosine nucleotide diphosphate dissociation inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002570
Physical Location & Seq
Forward (+)
27096869 .. 27102429
5561 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18760

Sequence Viewer

Length: 333 bp
ATGGATAGGAATGACTATTACGGAGGAGAGTGTGCATCACTTAATCTTATTCAGCTGTGGAAGAGGTTCAGGGGAGATGATAAGCCCCCAGCACAGTTGGGCTCTAGTAGGGGTAGGTACTTTATGATGGCCAATGGAACTCTAATGCGTGTCCTCATTCATACAGCTGTTACCAAGTATTTGTCCTTCAAAGCTGTCGATGGCGGTTTTGTCTATAATAAAGGAAAGGTTCACAAGGTTCCAGCAACTGACATGGAGGCACTTAAATCTCCACTCATGGGTCTATTTGAAAAGCGCCGTGCCCGCAAGTTCCTCATATGTTCAAGATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDI

Protein Analysis

110

Amino Acids

12.55

Weight (kDa)

10.06

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 1 - 106 9.1e-45 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 331
AciI CCGC 2 cut(s) 204, 304
AcoI YGGCCR 1 cut(s) 129
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 3 cut(s) 190, 290, 324
AluBI AGCT 3 cut(s) 55, 167, 194
AluI AGCT 3 cut(s) 55, 167, 194
AlwNI CAGNNNCTG 1 cut(s) 248
AoxI GGCC 1 cut(s) 129
Asp700I GAANNNNTTC 1 cut(s) 65
AspLEI GCGC 1 cut(s) 297
BaeGI GKGCMC 1 cut(s) 304
BalI TGGCCA 1 cut(s) 131
BanII GRGCYC 1 cut(s) 104
BarI GAAGNNNNNNTAC 2 cut(s) 170, 202
BccI CCATC 2 cut(s) 121, 194
BceAI ACGGC 1 cut(s) 282
BfaI CTAG 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 298
BmiI GGNNCC 1 cut(s) 240
BmsI GCATC 1 cut(s) 44
Bsc4I CCNNNNNNNGG 1 cut(s) 278
BseLI CCNNNNNNNGG 1 cut(s) 278
BseRI GAGGAG 1 cut(s) 39
BseSI GKGCMC 1 cut(s) 304
BseYI CCCAGC 1 cut(s) 88
BshFI GGCC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 278
BsnI GGCC 1 cut(s) 131
Bsp1286I GDGCHC 2 cut(s) 104, 304
BspACI CCGC 2 cut(s) 204, 304
BspANI GGCC 1 cut(s) 131
BspLI GGNNCC 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 96
Bst6I CTCTTC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 304
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 1 cut(s) 297
BstMWI GCNNNNNNNGC 1 cut(s) 303
BstSLI GKGCMC 1 cut(s) 304
BsuRI GGCC 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 304
CaiI CAGNNNCTG 1 cut(s) 248
CfoI GCGC 1 cut(s) 297
Csp6I GTAC 1 cut(s) 118
CviAII CATG 2 cut(s) 253, 277
CviJI RGCY 6 cut(s) 55, 85, 102, 131, 167, 194
CviKI_1 RGCY 6 cut(s) 55, 85, 102, 131, 167, 194
CviQI GTAC 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 104
EcoT38I GRGCYC 1 cut(s) 104
FaeI CATG 2 cut(s) 256, 280
FaiI YATR 8 cut(s) 125, 162, 216, 254, 278, 317, 319, 331
FatI CATG 2 cut(s) 252, 276
FauI CCCGC 1 cut(s) 311
FauNDI CATATG 1 cut(s) 317
FriOI GRGCYC 1 cut(s) 104
FspBI CTAG 1 cut(s) 105
GlaI GCGC 1 cut(s) 296
GsaI CCCAGC 1 cut(s) 92
HaeII RGCGCY 1 cut(s) 298
HaeIII GGCC 1 cut(s) 131
HhaI GCGC 1 cut(s) 297
Hin1II CATG 2 cut(s) 256, 280
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
Hpy166II GTNNAC 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 324
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 1 cut(s) 303
Hsp92II CATG 2 cut(s) 256, 280
HspAI GCGC 1 cut(s) 295
LpnPI CCDG 3 cut(s) 55, 102, 255
LweI GCATC 1 cut(s) 44
MaeI CTAG 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 169
MboII GAAGA 1 cut(s) 73
MhlI GDGCHC 2 cut(s) 104, 304
MlsI TGGCCA 1 cut(s) 131
MluNI TGGCCA 1 cut(s) 131
MnlI CCTC 5 cut(s) 17, 57, 164, 250, 323
Mox20I TGGCCA 1 cut(s) 131
MroXI GAANNNNTTC 1 cut(s) 65
MscI TGGCCA 1 cut(s) 131
MseI TTAA 2 cut(s) 42, 264
Msp20I TGGCCA 1 cut(s) 131
MspA1I CMGCKG 2 cut(s) 55, 167
MwoI GCNNNNNNNGC 1 cut(s) 303
NdeI CATATG 1 cut(s) 317
NlaIII CATG 2 cut(s) 256, 280
NlaIV GGNNCC 1 cut(s) 240
PdmI GAANNNNTTC 1 cut(s) 65
PsiI TTATAA 1 cut(s) 331
PspFI CCCAGC 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 240
PstNI CAGNNNCTG 1 cut(s) 248
PvuII CAGCTG 2 cut(s) 55, 167
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SaqAI TTAA 2 cut(s) 42, 264
SduI GDGCHC 2 cut(s) 104, 304
SetI ASST 7 cut(s) 57, 68, 119, 169, 196, 231, 240
SfaNI GCATC 1 cut(s) 44
SsiI CCGC 2 cut(s) 204, 304
SspMI CTAG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 198
Tru1I TTAA 2 cut(s) 42, 264
Tru9I TTAA 2 cut(s) 42, 264
TspDTI ATGAA 1 cut(s) 149
TspGWI ACGGA 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.