Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005662

Physical Location & Seq

Genomic Coordinates Reverse (-)

22254563 .. 22256177

Gene Structure 1615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGAATCTCTCATCAATCCCAGCCATGGCGGAGGAAACTACGATTCTCACTCTTCTTCTCTCGATAGTCTCAAACCAAGCGTACTAGTCATCATTCTCATTCTCCTCATGACTCTTCTCATCTCCGTTTCCATTTGCTTCCTCCTCCGCTGTCTCAATCGCTGTAGCCACCGCTCCGTTCTCCCTCTTTCATCTTCCTCTTCCGTCGCAACCGTAACTTCCGATTCCCGACGATTCTCTGGACATCGAGTCTCTCCCGAAACAGAACGGTCCTCCGTGCTTGATTCGCTTCCGATTTTCAAATTCTCCTCCGTCACTCGCCGATCTAGCTCCATGAATTCCGGAGATTGCGCCGTTTGTTTGTCGAAATTCGAACCGGAGGATCAGCTCCGTCTTCTTCCTCTCTGTTGTCACGCTTTTCACGCCGATTGTATCGATATCTGGCTAGTCTCTAACCAGACTTGTCCTCTCTGTCGCTCTCCTCTCTTCGCTTCAGAATCTGATCTCATGAAGTCTCTCGCCGTCGTCGGCTCAAACAACGGCGGAGGAGAAAACAGCTTCCGTCTCGAAATCGGATCCATCAGCCGTCGTCGTCAAACACCGATTCCAGAATCCGTTGAGCAGCATCGAACTTACTCAATCGGTTCGTTCGATTACATAGTAGACGACGTAGATTCAGAAATCTCAGAGTCAAATTTCAACCGTGGAAAACAGGAAGACGCGACTACAACAACTGCCACAGCAACGGCGGTTACGACTAATCCGACGTCGTTTGAAGCTAGTTTAGCGGCGGATATAGGTAACGATGGTTCTAGAAGCTGGCTCAAGGATTACGTTGACAGACTCTCACGAGGTATATCGTCGCGTGCAATGTCGTTTAGAAGCTCTGGTAGATTTTTTACTGGGAGTAGTCGTCGGAGTGAGGAATTGACGGTGATGGATTTAGAAGCGAATCATGCCGGAGAAGAGATAAGTGAGCTTTTCCGGTGGCTCTCAGGGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

334

Amino Acids

36.56

Weight (kDa)

5.66

Isoelectric Point (pI)

64.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	116 - 159	2.7e-13	Ring finger domain
zf-RING_11	PF17123	116 - 145	2e-10	RING-like zinc finger
zf-rbx1	PF12678	131 - 159	6.1e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60220
fragaria_vesca	FvH4_7g08860
malus_domestica	MD02G1223200.v1.1 MD07G1091500.v1.1
prunus_persica	Prupe.2G116700_v2.0.a1
pyrus_communis	pycom07g07480 pycom15g32160
rosa_chinensis	RchiOBHm_Chr1g0344271 RchiOBHm_Chr7g0197351
rosa_laevigata	RLG00000003768 RLG00000015102 RLG00000019331 RLG00000025671 RLG00000028912
rosa_multiflora	Rmu_sc0000019.1_g000012 Rmu_sc0000338.1_g000018 Rmu_sc0003703.1_g000004 Rmu_sc0005991.1_g000007 Rmu_sc0016684.1_g000002 Rmu_sc0016685.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309960
rosa_rugosa	Rorug01G0172700
rosa_samantha	Rh1AG188600 Rh1BG155100 Rh1CG174400 Rh2CG262100 Rh3BG248600
rosa_wichuraiana	Rw1G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	770
AccBSI	CCGCTC	1 cut(s)	174
AccI	GTMKAC	1 cut(s)	663
AccII	CGCG	2 cut(s)	722, 865
AccIII	TCCGGA	1 cut(s)	341
AciI	CCGC	7 cut(s)	30, 148, 172, 543, 749, 788, 791
AclWI	GGATC	3 cut(s)	390, 570, 583
AcsI	RAATTY	4 cut(s)	302, 337, 368, 694
AcuI	CTGAAG	1 cut(s)	477
AcyI	GRCGYC	1 cut(s)	767
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	3 cut(s)	301, 700, 776
AhdI	GACNNNNNGTC	1 cut(s)	248
AhlI	ACTAGT	1 cut(s)	85
AluBI	AGCT	7 cut(s)	330, 388, 558, 779, 819, 885, 979
AluI	AGCT	7 cut(s)	330, 388, 558, 779, 819, 885, 979
Alw26I	GTCTC	6 cut(s)	74, 158, 256, 454, 519, 569
AlwI	GGATC	3 cut(s)	390, 570, 583
AlwNI	CAGNNNCTG	1 cut(s)	500
Aor13HI	TCCGGA	1 cut(s)	341
ApeKI	GCWGC	1 cut(s)	622
ApoI	RAATTY	4 cut(s)	302, 337, 368, 694
AspLEI	GCGC	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	270
AsuHPI	GGTGA	1 cut(s)	946
AsuII	TTCGAA	1 cut(s)	372
AvaII	GGWCC	1 cut(s)	270
BamHI	GGATCC	1 cut(s)	575
BauI	CACGAG	1 cut(s)	849
BbsI	GAAGAC	2 cut(s)	386, 723
BbvI	GCAGC	1 cut(s)	634
BccI	CCATC	3 cut(s)	587, 800, 931
BceAI	ACGGC	5 cut(s)	338, 506, 556, 570, 762
BcoDI	GTCTC	6 cut(s)	74, 158, 256, 454, 519, 569
BcuI	ACTAGT	1 cut(s)	85
BfaI	CTAG	5 cut(s)	86, 327, 446, 780, 813
BfmI	CTRYAG	1 cut(s)	163
BisI	GCNGC	2 cut(s)	623, 789
BlsI	GCNGC	2 cut(s)	624, 790
Bme18I	GGWCC	1 cut(s)	270
BmeRI	GACNNNNNGTC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	270
BmiI	GGNNCC	1 cut(s)	577
BmrI	ACTGGG	1 cut(s)	912
BmsI	GCATC	1 cut(s)	634
BmuI	ACTGGG	1 cut(s)	912
BpiI	GAAGAC	2 cut(s)	386, 723
Bpu14I	TTCGAA	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	809
Bsa29I	ATCGAT	1 cut(s)	435
BsaHI	GRCGYC	1 cut(s)	767
BsaJI	CCNNGG	2 cut(s)	25, 703
BsaWI	WCCGGW	3 cut(s)	341, 376, 984
BsaXI	ACNNNNNCTCC	2 cut(s)	898, 928
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	907
Bse3DI	GCAATG	1 cut(s)	876
BseAI	TCCGGA	1 cut(s)	341
BseCI	ATCGAT	1 cut(s)	435
BseDI	CCNNGG	2 cut(s)	25, 703
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMI	GCAATG	1 cut(s)	876
BseMII	CTCAG	1 cut(s)	699
BseNI	ACTGG	1 cut(s)	907
BseRI	GAGGAG	5 cut(s)	95, 134, 298, 471, 561
BseXI	GCAGC	1 cut(s)	634
BseYI	CCCAGC	1 cut(s)	20
Bsh1236I	CGCG	2 cut(s)	722, 865
BshVI	ATCGAT	1 cut(s)	435
BsiSI	CCGG	4 cut(s)	342, 377, 960, 985
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	6 cut(s)	74, 158, 256, 454, 519, 569
BsmBI	CGTCTC	1 cut(s)	569
Bsp119I	TTCGAA	1 cut(s)	372
Bsp13I	TCCGGA	1 cut(s)	341
Bsp143I	GATC	4 cut(s)	323, 382, 502, 575
Bsp19I	CCATGG	1 cut(s)	25
BspACI	CCGC	7 cut(s)	30, 148, 172, 543, 749, 788, 791
BspCNI	CTCAG	1 cut(s)	698
BspDI	ATCGAT	1 cut(s)	435
BspEI	TCCGGA	1 cut(s)	341
BspFNI	CGCG	2 cut(s)	722, 865
BspHI	TCATGA	2 cut(s)	108, 507
BspLI	GGNNCC	1 cut(s)	577
BspPI	GGATC	3 cut(s)	390, 570, 583
BspT104I	TTCGAA	1 cut(s)	372
BsrBI	CCGCTC	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	876
BsrI	ACTGG	1 cut(s)	907
BssECI	CCNNGG	2 cut(s)	25, 703
BssMI	GATC	4 cut(s)	323, 382, 502, 575
BssNI	GRCGYC	1 cut(s)	767
BssSI	CACGAG	1 cut(s)	849
BssT1I	CCWWGG	1 cut(s)	25
Bst2BI	CACGAG	1 cut(s)	849
Bst4CI	ACNGT	4 cut(s)	214, 270, 704, 934
Bst6I	CTCTTC	5 cut(s)	58, 120, 205, 491, 960
BstACI	GRCGYC	1 cut(s)	767
BstBI	TTCGAA	1 cut(s)	372
BstC8I	GCNNGC	2 cut(s)	821, 867
BstDEI	CTNAG	2 cut(s)	685, 994
BstDSI	CCRYGG	2 cut(s)	25, 703
BstFNI	CGCG	2 cut(s)	722, 865
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	4 cut(s)	326, 385, 505, 578
BstMAI	GTCTC	6 cut(s)	74, 158, 256, 454, 519, 569
BstMBI	GATC	4 cut(s)	323, 382, 502, 575
BstMWI	GCNNNNNNNGC	5 cut(s)	286, 327, 422, 785, 956
BstSFI	CTRYAG	1 cut(s)	163
BstUI	CGCG	2 cut(s)	722, 865
BstV1I	GCAGC	1 cut(s)	634
BstV2I	GAAGAC	2 cut(s)	386, 723
BstX2I	RGATCY	1 cut(s)	575
BstYI	RGATCY	1 cut(s)	575
Bsu15I	ATCGAT	1 cut(s)	435
BsuTUI	ATCGAT	1 cut(s)	435
BtgI	CCRYGG	2 cut(s)	25, 703
Cac8I	GCNNGC	2 cut(s)	821, 867
CaiI	CAGNNNCTG	1 cut(s)	500
CciI	TCATGA	2 cut(s)	108, 507
CfoI	GCGC	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	270
ClaI	ATCGAT	1 cut(s)	435
CseI	GACGC	1 cut(s)	728
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	5 cut(s)	26, 109, 334, 508, 956
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	2 cut(s)	685, 994
DpnI	GATC	4 cut(s)	325, 384, 504, 577
DpnII	GATC	4 cut(s)	323, 382, 502, 575
DriI	GACNNNNNGTC	1 cut(s)	248
Eam1104I	CTCTTC	5 cut(s)	58, 120, 205, 491, 960
Eam1105I	GACNNNNNGTC	1 cut(s)	248
EarI	CTCTTC	5 cut(s)	58, 120, 205, 491, 960
EciI	GGCGGA	3 cut(s)	45, 558, 806
Eco130I	CCWWGG	1 cut(s)	25
Eco32I	GATATC	1 cut(s)	439
Eco47I	GGWCC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	477
EcoRI	GAATTC	1 cut(s)	337
EcoRV	GATATC	1 cut(s)	439
EcoT14I	CCWWGG	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	25
Esp3I	CGTCTC	1 cut(s)	569
FaeI	CATG	5 cut(s)	29, 112, 337, 511, 959
FaiI	YATR	8 cut(s)	27, 110, 335, 509, 659, 797, 857, 957
FatI	CATG	5 cut(s)	25, 108, 333, 507, 955
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	2 cut(s)	623, 789
Fsp4HI	GCNGC	2 cut(s)	623, 789
FspBI	CTAG	5 cut(s)	86, 327, 446, 780, 813
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	2 cut(s)	623, 789
GsaI	CCCAGC	1 cut(s)	24
HapII	CCGG	4 cut(s)	342, 377, 960, 985
HgaI	GACGC	1 cut(s)	728
HhaI	GCGC	1 cut(s)	353
Hin1I	GRCGYC	1 cut(s)	767
Hin1II	CATG	5 cut(s)	29, 112, 337, 511, 959
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HincII	GTYRAC	1 cut(s)	838
HindII	GTYRAC	1 cut(s)	838
HpaII	CCGG	4 cut(s)	342, 377, 960, 985
HphI	GGTGA	1 cut(s)	946
Hpy166II	GTNNAC	2 cut(s)	664, 838
Hpy188I	TCNGA	9 cut(s)	223, 294, 496, 502, 575, 679, 688, 765, 918
Hpy8I	GTNNAC	2 cut(s)	664, 838
HpyCH4III	ACNGT	4 cut(s)	214, 270, 704, 934
HpyCH4IV	ACGT	3 cut(s)	669, 767, 834
HpyCH4V	TGCA	1 cut(s)	869
HpyF10VI	GCNNNNNNNGC	5 cut(s)	286, 327, 422, 785, 956
HpyF3I	CTNAG	2 cut(s)	685, 994
HpySE526I	ACGT	3 cut(s)	669, 767, 834
Hsp92I	GRCGYC	1 cut(s)	767
Hsp92II	CATG	5 cut(s)	29, 112, 337, 511, 959
HspAI	GCGC	1 cut(s)	351
Kpn2I	TCCGGA	1 cut(s)	341
Kzo9I	GATC	4 cut(s)	323, 382, 502, 575
LmnI	GCTCC	3 cut(s)	179, 335, 393
Lsp1109I	GCAGC	1 cut(s)	634
LweI	GCATC	1 cut(s)	634
MaeI	CTAG	5 cut(s)	86, 327, 446, 780, 813
MaeII	ACGT	3 cut(s)	669, 767, 834
MaeIII	GTNAC	5 cut(s)	214, 313, 410, 751, 800
MalI	GATC	4 cut(s)	325, 384, 504, 577
MbiI	CCGCTC	1 cut(s)	174
MboI	GATC	4 cut(s)	323, 382, 502, 575
MflI	RGATCY	1 cut(s)	575
MluCI	AATT	5 cut(s)	302, 337, 368, 694, 926
MlyI	GAGTC	4 cut(s)	106, 258, 698, 837
MmeI	TCCRAC	2 cut(s)	788, 896
MroI	TCCGGA	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	150
MspI	CCGG	4 cut(s)	342, 377, 960, 985
MvnI	CGCG	2 cut(s)	722, 865
MwoI	GCNNNNNNNGC	5 cut(s)	286, 327, 422, 785, 956
NcoI	CCATGG	1 cut(s)	25
NdeII	GATC	4 cut(s)	323, 382, 502, 575
NlaIII	CATG	5 cut(s)	29, 112, 337, 511, 959
NlaIV	GGNNCC	1 cut(s)	577
NmuCI	GTSAC	2 cut(s)	313, 410
NspV	TTCGAA	1 cut(s)	372
PagI	TCATGA	2 cut(s)	108, 507
PcsI	WCGNNNNNNNCGW	3 cut(s)	648, 752, 761
PkrI	GCNGC	2 cut(s)	624, 790
PleI	GAGTC	4 cut(s)	106, 257, 697, 837
PpsI	GAGTC	4 cut(s)	106, 257, 697, 837
PspFI	CCCAGC	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	577
PspPI	GGNCC	1 cut(s)	270
PsrI	GAACNNNNNNTAC	2 cut(s)	793, 825
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	1 cut(s)	575
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SatI	GCNGC	2 cut(s)	623, 789
Sau3AI	GATC	4 cut(s)	323, 382, 502, 575
Sau96I	GGNCC	1 cut(s)	270
SchI	GAGTC	4 cut(s)	106, 258, 698, 837
SfaNI	GCATC	1 cut(s)	634
SfcI	CTRYAG	1 cut(s)	163
SfuI	TTCGAA	1 cut(s)	372
SinI	GGWCC	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	824
SmoI	CTYRAG	1 cut(s)	824
SpeI	ACTAGT	1 cut(s)	85
Sse9I	AATT	5 cut(s)	302, 337, 368, 694, 926
SsiI	CCGC	7 cut(s)	30, 148, 172, 543, 749, 788, 791
SspMI	CTAG	5 cut(s)	86, 327, 446, 780, 813
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	4 cut(s)	214, 270, 704, 934
TaiI	ACGT	3 cut(s)	672, 770, 837
TaqI	TCGA	8 cut(s)	63, 247, 365, 372, 435, 567, 628, 651
TasI	AATT	5 cut(s)	302, 337, 368, 694, 926
TauI	GCSGC	1 cut(s)	791
TseFI	GTSAC	2 cut(s)	313, 410
TseI	GCWGC	1 cut(s)	622
Tsp45I	GTSAC	2 cut(s)	313, 410
TspDTI	ATGAA	3 cut(s)	180, 350, 524
TspGWI	ACGGA	8 cut(s)	115, 166, 193, 265, 301, 380, 551, 604
VpaK11BI	GGWCC	1 cut(s)	270
XapI	RAATTY	4 cut(s)	302, 337, 368, 694
XbaI	TCTAGA	1 cut(s)	812
XmiI	GTMKAC	1 cut(s)	663
XspI	CTAG	5 cut(s)	86, 327, 446, 780, 813
ZraI	GACGTC	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.