Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005662

Physical Location & Seq

Genomic Coordinates Reverse (-)

47498509 .. 47499544

Gene Structure 1036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025671

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGACTCTCGTCGAAAATGCAAGCTCCTCCTCCCGCGGCGGCGGCGGCGATAGCTTTCGACTCGAGAATGGCAACGGCAGCCGCCGCCAAACAACTACGTCGTCCTACTCCAGCGCGCGCCGCTCCTACTCCATCGGATCGTTCGACTACCTCGTCGACGACGACTCCGAGGTCCGATTGTCCAATGCCAGAAACCGCTCGTCTGATCGGAAAGAAGAGGTGATTGTTGTTCTCGTCGAGCTCCAGCCGCCGCTGCAGTCAGAGGCCAATCTAGCTGCTGACGTGGCCTCGGGAATGAGATGGCTTAAAGAATTCGTGGATAGACTCTCCAGCTCTTCTCTACAAAGCTCCGGCACCGGACGGCCAGATGCCGAGCCACGACGCCTTCAGCATCATCTTCTCCGAGATCAGTGTCGGCAAGCATGTCCCAGGCGTAATCTTCGCCGAACTCGAGCCCACCGTCAAAGCCCACCATCTTCTTCTCCGAGATCGGTGCCAGCAAGCATATCCCAGGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

173

Amino Acids

19.0

Weight (kDa)

10.38

Isoelectric Point (pI)

93.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60220
fragaria_vesca	FvH4_7g08860
malus_domestica	MD02G1223200.v1.1 MD07G1091500.v1.1
prunus_persica	Prupe.2G116700_v2.0.a1
pyrus_communis	pycom07g07480 pycom15g32160
rosa_chinensis	RchiOBHm_Chr1g0344271 RchiOBHm_Chr7g0197351
rosa_laevigata	RLG00000003768 RLG00000015102 RLG00000019331 RLG00000025671 RLG00000028912
rosa_multiflora	Rmu_sc0000019.1_g000012 Rmu_sc0000338.1_g000018 Rmu_sc0003703.1_g000004 Rmu_sc0005991.1_g000007 Rmu_sc0016684.1_g000002 Rmu_sc0016685.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309960
rosa_rugosa	Rorug01G0172700
rosa_samantha	Rh1AG188600 Rh1BG155100 Rh1CG174400 Rh2CG262100 Rh3BG248600
rosa_wichuraiana	Rw1G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	152, 170
AccB1I	GGYRCC	2 cut(s)	353, 493
AccBSI	CCGCTC	2 cut(s)	123, 198
AccI	GTMKAC	1 cut(s)	156
AccII	CGCG	3 cut(s)	36, 116, 118
AclWI	GGATC	1 cut(s)	145
AcoI	YGGCCR	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	311
AcuI	CTGAAG	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	382
AjiI	CACGTC	1 cut(s)	283
AjnI	CCWGG	2 cut(s)	428, 510
AluBI	AGCT	6 cut(s)	24, 54, 241, 275, 333, 348
AluI	AGCT	6 cut(s)	24, 54, 241, 275, 333, 348
Alw21I	GWGCWC	1 cut(s)	243
AlwI	GGATC	1 cut(s)	145
Ama87I	CYCGRG	3 cut(s)	62, 289, 450
AoxI	GGCC	3 cut(s)	264, 285, 362
ApeKI	GCWGC	3 cut(s)	78, 253, 275
ApoI	RAATTY	1 cut(s)	311
AspLEI	GCGC	3 cut(s)	116, 118, 120
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	232
AvaI	CYCGRG	3 cut(s)	62, 289, 450
AvaII	GGWCC	1 cut(s)	172
BanI	GGYRCC	2 cut(s)	353, 493
BanII	GRGCYC	2 cut(s)	243, 457
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	3 cut(s)	90, 240, 262
BccI	CCATC	3 cut(s)	140, 294, 481
BceAI	ACGGC	2 cut(s)	91, 377
BcgI	CGANNNNNNTGC	2 cut(s)	475, 509
BciT130I	CCWGG	2 cut(s)	430, 512
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	254
Bme1390I	CCNGG	2 cut(s)	430, 512
Bme18I	GGWCC	1 cut(s)	172
BmeT110I	CYCGRG	3 cut(s)	62, 289, 450
BmgBI	CACGTC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	2 cut(s)	355, 495
BmrFI	CCNGG	2 cut(s)	430, 512
BmsI	GCATC	2 cut(s)	358, 400
BoxI	GACNNNNGTC	1 cut(s)	8
BpmI	CTGGAG	3 cut(s)	94, 227, 313
BsaHI	GRCGYC	1 cut(s)	382
BsaJI	CCNNGG	5 cut(s)	34, 168, 288, 428, 510
BsaWI	WCCGGW	1 cut(s)	356
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
BseBI	CCWGG	2 cut(s)	430, 512
BseDI	CCNNGG	5 cut(s)	34, 168, 288, 428, 510
BsePI	GCGCGC	2 cut(s)	114, 116
BseRI	GAGGAG	2 cut(s)	16, 19
BseXI	GCAGC	3 cut(s)	90, 240, 262
Bsh1236I	CGCG	3 cut(s)	36, 116, 118
BshFI	GGCC	3 cut(s)	266, 287, 364
BshNI	GGYRCC	2 cut(s)	353, 493
BsiHKAI	GWGCWC	1 cut(s)	243
BsiHKCI	CYCGRG	3 cut(s)	62, 289, 450
BsiSI	CCGG	2 cut(s)	351, 357
BslFI	GGGAC	1 cut(s)	411
BsmFI	GGGAC	1 cut(s)	411
BsnI	GGCC	3 cut(s)	266, 287, 364
BsoBI	CYCGRG	3 cut(s)	62, 289, 450
Bsp1286I	GDGCHC	2 cut(s)	243, 457
Bsp143I	GATC	4 cut(s)	137, 205, 406, 488
BspANI	GGCC	3 cut(s)	266, 287, 364
BspFNI	CGCG	3 cut(s)	36, 116, 118
BspLI	GGNNCC	2 cut(s)	355, 495
BspMAI	CTGCAG	1 cut(s)	258
BspPI	GGATC	1 cut(s)	145
BspQI	GCTCTTC	1 cut(s)	340
BspT107I	GGYRCC	2 cut(s)	353, 493
BsrBI	CCGCTC	2 cut(s)	123, 198
BssECI	CCNNGG	5 cut(s)	34, 168, 288, 428, 510
BssHII	GCGCGC	2 cut(s)	114, 116
BssMI	GATC	4 cut(s)	137, 205, 406, 488
BssNI	GRCGYC	1 cut(s)	382
Bst2UI	CCWGG	2 cut(s)	430, 512
Bst4CI	ACNGT	1 cut(s)	461
Bst6I	CTCTTC	2 cut(s)	210, 340
BstACI	GRCGYC	1 cut(s)	382
BstC8I	GCNNGC	6 cut(s)	22, 116, 118, 420, 498, 502
BstDSI	CCRYGG	1 cut(s)	34
BstFNI	CGCG	3 cut(s)	36, 116, 118
BstHHI	GCGC	3 cut(s)	116, 118, 120
BstKTI	GATC	4 cut(s)	140, 208, 409, 491
BstMBI	GATC	4 cut(s)	137, 205, 406, 488
BstNI	CCWGG	2 cut(s)	430, 512
BstNSI	RCATGY	1 cut(s)	426
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	428, 510
BstSFI	CTRYAG	1 cut(s)	254
BstUI	CGCG	3 cut(s)	36, 116, 118
BstV1I	GCAGC	3 cut(s)	90, 240, 262
BsuRI	GGCC	3 cut(s)	266, 287, 364
BtgI	CCRYGG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	416
Cac8I	GCNNGC	6 cut(s)	22, 116, 118, 420, 498, 502
CfoI	GCGC	3 cut(s)	116, 118, 120
Cfr13I	GGNCC	1 cut(s)	172
Cfr42I	CCGCGG	1 cut(s)	37
CseI	GACGC	1 cut(s)	390
CviAII	CATG	1 cut(s)	423
DpnI	GATC	4 cut(s)	139, 207, 408, 490
DpnII	GATC	4 cut(s)	137, 205, 406, 488
DrdI	GACNNNNNNGTC	2 cut(s)	152, 170
DseDI	GACNNNNNNGTC	2 cut(s)	152, 170
EaeI	YGGCCR	1 cut(s)	362
Eam1104I	CTCTTC	2 cut(s)	210, 340
EarI	CTCTTC	2 cut(s)	210, 340
Ecl136II	GAGCTC	1 cut(s)	241
Eco24I	GRGCYC	2 cut(s)	243, 457
Eco47I	GGWCC	1 cut(s)	172
Eco53kI	GAGCTC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	371
Eco88I	CYCGRG	3 cut(s)	62, 289, 450
EcoICRI	GAGCTC	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	311
EcoRII	CCWGG	2 cut(s)	428, 510
EcoT38I	GRGCYC	2 cut(s)	243, 457
FaeI	CATG	1 cut(s)	426
FaiI	YATR	2 cut(s)	424, 506
FaqI	GGGAC	1 cut(s)	411
FatI	CATG	1 cut(s)	422
FauI	CCCGC	1 cut(s)	41
FblI	GTMKAC	1 cut(s)	156
FriOI	GRGCYC	2 cut(s)	243, 457
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	3 cut(s)	115, 117, 119
GsuI	CTGGAG	3 cut(s)	94, 227, 313
HaeIII	GGCC	3 cut(s)	266, 287, 364
HapII	CCGG	2 cut(s)	351, 357
HgaI	GACGC	1 cut(s)	390
HhaI	GCGC	3 cut(s)	116, 118, 120
Hin1I	GRCGYC	1 cut(s)	382
Hin1II	CATG	1 cut(s)	426
Hin6I	GCGC	3 cut(s)	114, 116, 118
HinP1I	GCGC	3 cut(s)	114, 116, 118
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	4 cut(s)	4, 60, 164, 324
HpaII	CCGG	2 cut(s)	351, 357
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	8 cut(s)	137, 169, 176, 205, 210, 262, 404, 486
Hpy188III	TCNNGA	2 cut(s)	64, 291
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	7 cut(s)	14, 103, 158, 161, 164, 239, 384
HpyAV	CCTTC	1 cut(s)	395
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4IV	ACGT	2 cut(s)	98, 282
HpyCH4V	TGCA	2 cut(s)	20, 256
HpySE526I	ACGT	2 cut(s)	98, 282
Hsp92I	GRCGYC	1 cut(s)	382
Hsp92II	CATG	1 cut(s)	426
HspAI	GCGC	3 cut(s)	114, 116, 118
KspI	CCGCGG	1 cut(s)	37
Kzo9I	GATC	4 cut(s)	137, 205, 406, 488
LguI	GCTCTTC	1 cut(s)	340
LmnI	GCTCC	4 cut(s)	29, 128, 246, 353
Lsp1109I	GCAGC	3 cut(s)	90, 240, 262
LweI	GCATC	2 cut(s)	358, 400
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	2 cut(s)	98, 282
MalI	GATC	4 cut(s)	139, 207, 408, 490
MbiI	CCGCTC	2 cut(s)	123, 198
MboI	GATC	4 cut(s)	137, 205, 406, 488
MboII	GAAGA	6 cut(s)	227, 327, 389, 431, 468, 471
MhlI	GDGCHC	2 cut(s)	243, 457
MluCI	AATT	1 cut(s)	311
MlyI	GAGTC	3 cut(s)	54, 158, 318
MnlI	CCTC	7 cut(s)	37, 40, 161, 163, 211, 256, 298
MseI	TTAA	1 cut(s)	306
MspA1I	CMGCKG	2 cut(s)	36, 253
MspI	CCGG	2 cut(s)	351, 357
MspR9I	CCNGG	2 cut(s)	430, 512
MvaI	CCWGG	2 cut(s)	430, 512
MvnI	CGCG	3 cut(s)	36, 116, 118
NdeII	GATC	4 cut(s)	137, 205, 406, 488
NlaIII	CATG	1 cut(s)	426
NlaIV	GGNNCC	2 cut(s)	355, 495
NmeAIII	GCCGAG	1 cut(s)	397
NspI	RCATGY	1 cut(s)	426
PaeR7I	CTCGAG	2 cut(s)	62, 450
PauI	GCGCGC	2 cut(s)	114, 116
PciSI	GCTCTTC	1 cut(s)	340
PcsI	WCGNNNNNNNCGW	6 cut(s)	141, 150, 159, 165, 448, 457
PleI	GAGTC	3 cut(s)	54, 158, 318
PpsI	GAGTC	3 cut(s)	54, 158, 318
PshAI	GACNNNNGTC	1 cut(s)	8
Psp124BI	GAGCTC	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	428, 510
PspGI	CCWGG	2 cut(s)	428, 510
PspN4I	GGNNCC	2 cut(s)	355, 495
PspPI	GGNCC	1 cut(s)	172
PspXI	VCTCGAGB	1 cut(s)	450
PstI	CTGCAG	1 cut(s)	258
PteI	GCGCGC	2 cut(s)	114, 116
SacI	GAGCTC	1 cut(s)	243
SacII	CCGCGG	1 cut(s)	37
SalI	GTCGAC	1 cut(s)	155
SapI	GCTCTTC	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	306
Sau3AI	GATC	4 cut(s)	137, 205, 406, 488
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	3 cut(s)	54, 158, 318
ScrFI	CCNGG	2 cut(s)	430, 512
SduI	GDGCHC	2 cut(s)	243, 457
SfaNI	GCATC	2 cut(s)	358, 400
SfcI	CTRYAG	1 cut(s)	254
Sfr274I	CTCGAG	2 cut(s)	62, 450
Sfr303I	CCGCGG	1 cut(s)	37
SgrBI	CCGCGG	1 cut(s)	37
SgrDI	CGTCGACG	1 cut(s)	155
SinI	GGWCC	1 cut(s)	172
SlaI	CTCGAG	2 cut(s)	62, 450
SmlI	CTYRAG	2 cut(s)	62, 450
SmoI	CTYRAG	2 cut(s)	62, 450
Sse9I	AATT	1 cut(s)	311
SspMI	CTAG	1 cut(s)	272
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	2 cut(s)	428, 510
TaaI	ACNGT	1 cut(s)	461
TaiI	ACGT	2 cut(s)	101, 285
TaqI	TCGA	7 cut(s)	12, 58, 63, 144, 156, 237, 451
TasI	AATT	1 cut(s)	311
TauI	GCSGC	9 cut(s)	39, 42, 45, 48, 84, 87, 123, 250, 253
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	1 cut(s)	416
TseI	GCWGC	3 cut(s)	78, 253, 275
TspRI	CASTG	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	172
XapI	RAATTY	1 cut(s)	311
XceI	RCATGY	1 cut(s)	426
XhoI	CTCGAG	2 cut(s)	62, 450
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.