Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003703.1

Orthogroup ID

OG0005662

Physical Location & Seq

Genomic Coordinates Forward (+)

22368 .. 23015

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003703.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atgaccgataagccactggagccgtccctatcgccgccgtcgaagcccgtcactctccaagactgggagtccttaatcgacgatttccagcacggcggatcacgcctccaccgctggacctccgcgcacccaatcatcatcaaccaagccctctcttgtctcaacaagcgagaattccctctcaagctccagctcattgtcttccttgaagaattctccgacccgctcttcacatccgacctggactccctcttccggcgacgacgcccccgcccgagtatctccggtagaatctactgccgccgcctatcccgtctcctctctcccagttttcgccttctctgccatcaagccagccgagcctcctccactgcggtcgttgccaccgactgtgtcgtctgcctctcgaagttcgagcatgacgaccagctccgactactccctctctactgtcaaaccttccacgtatcgtgcatcgacgagtggctccattcccaacagacctgcccactctgctggtcgtcgatttccgcgtccgactccgagctcatgaagatagggaagaagagagagagagagagagaggaccttgtggtggtctggaagagaaggggagggagagaggggggagggtgttttaggaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

24.78

Weight (kDa)

8.99

Isoelectric Point (pI)

65.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60220
fragaria_vesca	FvH4_7g08860
malus_domestica	MD02G1223200.v1.1 MD07G1091500.v1.1
prunus_persica	Prupe.2G116700_v2.0.a1
pyrus_communis	pycom07g07480 pycom15g32160
rosa_chinensis	RchiOBHm_Chr1g0344271 RchiOBHm_Chr7g0197351
rosa_laevigata	RLG00000003768 RLG00000015102 RLG00000019331 RLG00000025671 RLG00000028912
rosa_multiflora	Rmu_sc0000019.1_g000012 Rmu_sc0000338.1_g000018 Rmu_sc0003703.1_g000004 Rmu_sc0005991.1_g000007 Rmu_sc0016684.1_g000002 Rmu_sc0016685.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309960
rosa_rugosa	Rorug01G0172700
rosa_samantha	Rh1AG188600 Rh1BG155100 Rh1CG174400 Rh2CG262100 Rh3BG248600
rosa_wichuraiana	Rw1G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	395
Acc36I	ACCTGC	1 cut(s)	512
AccBSI	CCGCTC	1 cut(s)	226
AccII	CGCG	2 cut(s)	125, 533
AclWI	GGATC	1 cut(s)	106
AcsI	RAATTY	2 cut(s)	173, 212
AcyI	GRCGYC	1 cut(s)	265
AfiI	CCNNNNNNNGG	3 cut(s)	64, 255, 595
AgsI	TTSAA	1 cut(s)	209
AhdI	GACNNNNNGTC	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	4 cut(s)	187, 193, 430, 547
AluI	AGCT	4 cut(s)	187, 193, 430, 547
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	2 cut(s)	164, 320
AlwI	GGATC	1 cut(s)	106
Ama87I	CYCGRG	1 cut(s)	274
ApoI	RAATTY	2 cut(s)	173, 212
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	2 cut(s)	117, 586
AvaI	CYCGRG	1 cut(s)	274
AvaII	GGWCC	2 cut(s)	117, 586
BanII	GRGCYC	1 cut(s)	549
BbsI	GAAGAC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	549
BccI	CCATC	1 cut(s)	354
BceAI	ACGGC	3 cut(s)	7, 22, 109
BciT130I	CCWGG	1 cut(s)	242
BcoDI	GTCTC	2 cut(s)	164, 320
BfuAI	ACCTGC	1 cut(s)	512
BisI	GCNGC	3 cut(s)	35, 301, 304
BlsI	GCNGC	3 cut(s)	36, 302, 305
Bme1390I	CCNGG	1 cut(s)	242
Bme18I	GGWCC	2 cut(s)	117, 586
BmeRI	GACNNNNNGTC	1 cut(s)	67
BmeT110I	CYCGRG	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	117, 586
BmiI	GGNNCC	2 cut(s)	21, 488
BmrFI	CCNGG	1 cut(s)	242
BmrI	ACTGGG	2 cut(s)	73, 321
BmsI	GCATC	1 cut(s)	483
BmuI	ACTGGG	2 cut(s)	73, 321
BpiI	GAAGAC	1 cut(s)	193
BpmI	CTGGAG	2 cut(s)	38, 173
BpuEI	CTTGAG	1 cut(s)	167
BsaAI	YACGTR	1 cut(s)	466
BsaHI	GRCGYC	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 255, 595
Bse1I	ACTGG	3 cut(s)	21, 68, 327
BseBI	CCWGG	1 cut(s)	242
BseGI	GGATG	1 cut(s)	233
BseLI	CCNNNNNNNGG	3 cut(s)	64, 255, 595
BseNI	ACTGG	3 cut(s)	21, 68, 327
BseRI	GAGGAG	2 cut(s)	308, 355
Bsh1236I	CGCG	2 cut(s)	125, 533
Bsh1285I	CGRYCG	1 cut(s)	378
BsiEI	CGRYCG	1 cut(s)	378
BsiHKAI	GWGCWC	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	2 cut(s)	256, 285
BslFI	GGGAC	1 cut(s)	10
BslI	CCNNNNNNNGG	3 cut(s)	64, 255, 595
BsmAI	GTCTC	2 cut(s)	164, 320
BsmBI	CGTCTC	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	549
Bsp143I	GATC	1 cut(s)	98
BspFNI	CGCG	2 cut(s)	125, 533
BspHI	TCATGA	1 cut(s)	549
BspLI	GGNNCC	2 cut(s)	21, 488
BspMI	ACCTGC	1 cut(s)	512
BspPI	GGATC	1 cut(s)	106
BspQI	GCTCTTC	1 cut(s)	233
BsrBI	CCGCTC	1 cut(s)	226
BsrI	ACTGG	3 cut(s)	21, 68, 327
BssMI	GATC	1 cut(s)	98
BssNI	GRCGYC	1 cut(s)	265
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	2 cut(s)	392, 452
Bst6I	CTCTTC	4 cut(s)	233, 257, 560, 599
BstACI	GRCGYC	1 cut(s)	265
BstBAI	YACGTR	1 cut(s)	466
BstC8I	GCNNGC	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	233
BstFNI	CGCG	2 cut(s)	125, 533
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	1 cut(s)	101
BstMAI	GTCTC	2 cut(s)	164, 320
BstMBI	GATC	1 cut(s)	98
BstMCI	CGRYCG	1 cut(s)	378
BstMWI	GCNNNNNNNGC	8 cut(s)	19, 43, 102, 111, 342, 359, 380, 513
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	240
BstUI	CGCG	2 cut(s)	125, 533
BstV2I	GAAGAC	1 cut(s)	193
BstXI	CCANNNNNNTGG	1 cut(s)	516
BtsCI	GGATG	1 cut(s)	233
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	2 cut(s)	14, 369
BveI	ACCTGC	1 cut(s)	512
Cac8I	GCNNGC	1 cut(s)	355
CciI	TCATGA	1 cut(s)	549
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	2 cut(s)	117, 586
CseI	GACGC	2 cut(s)	273, 522
CviAII	CATG	2 cut(s)	419, 550
DpnI	GATC	1 cut(s)	100
DpnII	GATC	1 cut(s)	98
DrdI	GACNNNNNNGTC	1 cut(s)	395
DriI	GACNNNNNGTC	1 cut(s)	67
DseDI	GACNNNNNNGTC	1 cut(s)	395
Eam1104I	CTCTTC	4 cut(s)	233, 257, 560, 599
Eam1105I	GACNNNNNGTC	1 cut(s)	67
EarI	CTCTTC	4 cut(s)	233, 257, 560, 599
EciI	GGCGGA	1 cut(s)	111
Ecl136II	GAGCTC	1 cut(s)	547
Eco24I	GRGCYC	1 cut(s)	549
Eco47I	GGWCC	2 cut(s)	117, 586
Eco53kI	GAGCTC	1 cut(s)	547
Eco88I	CYCGRG	1 cut(s)	274
EcoICRI	GAGCTC	1 cut(s)	547
EcoO109I	RGGNCCY	1 cut(s)	586
EcoRI	GAATTC	2 cut(s)	173, 212
EcoRII	CCWGG	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	549
Esp3I	CGTCTC	1 cut(s)	320
FaeI	CATG	2 cut(s)	422, 553
FaiI	YATR	2 cut(s)	420, 551
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	2 cut(s)	418, 549
FauI	CCCGC	2 cut(s)	231, 278
Fnu4HI	GCNGC	3 cut(s)	35, 301, 304
FokI	GGATG	1 cut(s)	220
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	3 cut(s)	35, 301, 304
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	3 cut(s)	35, 301, 304
GsuI	CTGGAG	2 cut(s)	38, 173
HapII	CCGG	2 cut(s)	256, 285
HgaI	GACGC	2 cut(s)	273, 522
HhaI	GCGC	1 cut(s)	127
Hin1I	GRCGYC	1 cut(s)	265
Hin1II	CATG	2 cut(s)	422, 553
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HinfI	GANTC	4 cut(s)	68, 245, 291, 539
HpaII	CCGG	2 cut(s)	256, 285
Hpy188I	TCNGA	5 cut(s)	220, 238, 434, 538, 544
Hpy188III	TCNNGA	3 cut(s)	406, 550, 601
Hpy99I	CGWCG	6 cut(s)	43, 83, 264, 267, 482, 526
HpyAV	CCTTC	3 cut(s)	347, 469, 603
HpyCH4III	ACNGT	2 cut(s)	392, 452
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	1 cut(s)	474
HpyF10VI	GCNNNNNNNGC	8 cut(s)	19, 43, 102, 111, 342, 359, 380, 513
HpySE526I	ACGT	1 cut(s)	465
Hsp92I	GRCGYC	1 cut(s)	265
Hsp92II	CATG	2 cut(s)	422, 553
HspAI	GCGC	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	98
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	4 cut(s)	19, 192, 435, 492
LweI	GCATC	1 cut(s)	483
MaeII	ACGT	1 cut(s)	465
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	1 cut(s)	100
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	1 cut(s)	98
MboII	GAAGA	8 cut(s)	193, 220, 221, 244, 565, 574, 577, 616
MhlI	GDGCHC	1 cut(s)	549
MluCI	AATT	2 cut(s)	173, 212
MlyI	GAGTC	3 cut(s)	77, 239, 533
MmeI	TCCRAC	4 cut(s)	243, 261, 457, 561
MseI	TTAA	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	114
MspI	CCGG	2 cut(s)	256, 285
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
MvnI	CGCG	2 cut(s)	125, 533
MwoI	GCNNNNNNNGC	8 cut(s)	19, 43, 102, 111, 342, 359, 380, 513
NdeII	GATC	1 cut(s)	98
NlaIII	CATG	2 cut(s)	422, 553
NlaIV	GGNNCC	2 cut(s)	21, 488
NmeAIII	GCCGAG	1 cut(s)	383
NmuCI	GTSAC	1 cut(s)	49
PagI	TCATGA	1 cut(s)	549
PciSI	GCTCTTC	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	4 cut(s)	38, 384, 420, 530
PfeI	GAWTC	1 cut(s)	291
PflFI	GACNNNGTC	1 cut(s)	392
PkrI	GCNGC	3 cut(s)	36, 302, 305
PleI	GAGTC	3 cut(s)	76, 239, 533
PpsI	GAGTC	3 cut(s)	76, 239, 533
Ppu21I	YACGTR	1 cut(s)	466
PpuMI	RGGWCCY	1 cut(s)	586
Psp124BI	GAGCTC	1 cut(s)	549
Psp5II	RGGWCCY	1 cut(s)	586
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	21, 488
PspPI	GGNCC	2 cut(s)	117, 586
PspPPI	RGGWCCY	1 cut(s)	586
PsyI	GACNNNGTC	1 cut(s)	392
SacI	GAGCTC	1 cut(s)	549
SapI	GCTCTTC	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	3 cut(s)	35, 301, 304
Sau3AI	GATC	1 cut(s)	98
Sau96I	GGNCC	2 cut(s)	117, 586
SchI	GAGTC	3 cut(s)	77, 239, 533
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	549
SfaNI	GCATC	1 cut(s)	483
SinI	GGWCC	2 cut(s)	117, 586
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	173, 212
SstI	GAGCTC	1 cut(s)	549
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	2 cut(s)	392, 452
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	6 cut(s)	41, 78, 407, 414, 477, 524
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	2 cut(s)	173, 212
TauI	GCSGC	3 cut(s)	37, 303, 306
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	2 cut(s)	21, 376
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	566
TspRI	CASTG	2 cut(s)	21, 376
Tth111I	GACNNNGTC	1 cut(s)	392
VpaK11BI	GGWCC	2 cut(s)	117, 586
XapI	RAATTY	2 cut(s)	173, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.