Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005662

Physical Location & Seq

Genomic Coordinates Forward (+)

23482494 .. 23485811

Gene Structure 3318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0172700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1722 bp

ATGGAGAAGAGACGAAGCAAAGATACATCATCATTATGGTTGCTCAAGTCTACATCGGATATGCAAGTAAATGTACTTGGTGGTCAGTCATTCACTATGGACAAAGAGCTTCTGGCTGCAAAATCAGCCAAATTTGCTGCTACACTCAAAGAGAATCCGCAGGAAGATCTTGCTAACTTCCTCCAAAGTGTCCCTGCTACTGCGGACATTCTTGAGCTTGTTGCGAGATTCTATCATGGCTTTGAAATTCAAATTTGCAGTCAGAATGTTGTACAGCTCATTTGCGTTGCTGACTACTTGGACATGACTGAAAACCACAGCAAAGATAATTTATTACACAAAGCTATTTCATATTTTCAACAAAGAATCCTCCCTAGCTGGTCTGAAACTATTAAGGCTTTCCAATCCACAGAAAAGGTATTTCAACAATCCTGGAAGCTTGGATTAGTACATGAATGTTTGGACTCTATCATTAGAAAGGCAAAAGCTAGTCCCCAACTTCTGGGCGAACCAATCAAGAATTCTACTGCAAATGCTGATGATAGTGACGAGGATTATGAAGGTTATAAGCCGAATGCAAGGAGAAGGCTCTTCGATCTCAATTGGAAACCAGAGGATCTAACAACATTGTCCCTCCAGCTTTATGAGCTCCTCATGCATGCAATGAATAAGCATGGAGTTCCATCAGAATATGTGGCTGCATCTCTTTGTAACTACACAAAGAAATGGGTTTTCTCTAGCAGTGGAGAGGAAGCACTCAAGAAAAAGTACCAAAAGGACATCCTTGAAGCAGTTGAGAGGCTTTTGCCTGATGAAATAGGACTCCTTCCATGCACGTTGTTGTTTCAAATGCTTCGAGTTGCTATTTATTTGGAAGTTACCTCTGACTGCAGAAATGGGATTGAGATCAGAATTGGAAAACAACTTGACCAGGCAACAGTCAAAGACCTCTTAATACCATCTCACGGATATTCTAAAGTAGTGCAATATGATATTCAATGTGTGAGAAGGATTGTGAAGGTTTTCTATGCTAATTACTCTTCGTCAAATGTAACTGACATAACTGGTCTAATAGCAGTGGCAGATCTCATTGAAGAATTCTTAGCTGAAGTTGCTAGTGACATAGACTTGAAGATATCTACATTTGTCGGATTAGCAGAGATGTTGGTTTCAGCATCCATGGGAGTAAAAACAAACTCGGATGGAACATACAGGGCTGTTGCTATATACTTAGATAAGCACAGGCACTTGACAGAATCCGAGCGAGAAGAAGTGTGTCAGGTATTGGATTTCCAAAAGATGTCCCCCCAAGCTTGTGATCATGCAGCCAAAAACGAATGCATGCCATTAAGGATGGTGGTACAGGTGTTGTTTGCAGGGCAATTGCAGCTTAGAGACACGATCACGAAGGAGGTGCAGAGTTTGGATGAGAAATTAATAAAAGAAGAAGCAGACGAGGTGAATGCACCAAGGGTGGATTTGTGTGAGGGGAAAATGAGATCTGAGGTGGAGAAAATGAGCAAAAAGGTGATGCTGCTTGAGAGAGAGTGCAGTATGATGAGAAAAGAGATTGAGAATAGCTCTAGCCTTGTGGTGAGGAAGGAAAAACCTAGCTTGTGGGGAGAAATGAAGAGAAAGTTTGGTTGCATCAGCAACACTCATGATTCTAACTGCCAATTGAAGAAGAAAAAGTTGCCTCTGAAACCAAAACGTGGACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

573

Amino Acids

65.05

Weight (kDa)

6.46

Isoelectric Point (pI)

49.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	16 - 104	9.6e-06	BTB/POZ domain
NPH3	PF03000	201 - 439	1.1e-69	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60220
fragaria_vesca	FvH4_7g08860
malus_domestica	MD02G1223200.v1.1 MD07G1091500.v1.1
prunus_persica	Prupe.2G116700_v2.0.a1
pyrus_communis	pycom07g07480 pycom15g32160
rosa_chinensis	RchiOBHm_Chr1g0344271 RchiOBHm_Chr7g0197351
rosa_laevigata	RLG00000003768 RLG00000015102 RLG00000019331 RLG00000025671 RLG00000028912
rosa_multiflora	Rmu_sc0000019.1_g000012 Rmu_sc0000338.1_g000018 Rmu_sc0003703.1_g000004 Rmu_sc0005991.1_g000007 Rmu_sc0016684.1_g000002 Rmu_sc0016685.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309960
rosa_rugosa	Rorug01G0172700
rosa_samantha	Rh1AG188600 Rh1BG155100 Rh1CG174400 Rh2CG262100 Rh3BG248600
rosa_wichuraiana	Rw1G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	567
AccB7I	CCANNNNNTGG	2 cut(s)	502, 1712
AccI	GTMKAC	1 cut(s)	50
AciI	CCGC	2 cut(s)	158, 203
AclWI	GGATC	1 cut(s)	624
AcsI	RAATTY	5 cut(s)	131, 246, 252, 520, 1097
AcuI	CTGAAG	1 cut(s)	1128
AfaI	GTAC	5 cut(s)	75, 273, 450, 770, 1362
AfiI	CCNNNNNNNGG	3 cut(s)	502, 965, 1712
AjnI	CCWGG	2 cut(s)	431, 930
AjuI	GAANNNNNNNTTGG	2 cut(s)	505, 537
Alw21I	GWGCWC	1 cut(s)	651
Alw26I	GTCTC	2 cut(s)	4, 1389
AlwI	GGATC	1 cut(s)	624
ApeKI	GCWGC	6 cut(s)	116, 137, 698, 1325, 1387, 1534
ApoI	RAATTY	5 cut(s)	131, 246, 252, 520, 1097
ArsI	GACNNNNNNTTYG	2 cut(s)	244, 276
AseI	ATTAAT	1 cut(s)	1436
Asp700I	GAANNNNTTC	1 cut(s)	1022
AsuHPI	GGTGA	3 cut(s)	1471, 1540, 1606
BaeI	ACNNNNGTAYC	2 cut(s)	1352, 1385
BanII	GRGCYC	1 cut(s)	651
BarI	GAAGNNNNNNTAC	2 cut(s)	7, 39
Bbv12I	GWGCWC	1 cut(s)	651
BbvI	GCAGC	6 cut(s)	103, 124, 685, 1337, 1399, 1521
BccI	CCATC	4 cut(s)	691, 967, 1196, 1348
BcgI	CGANNNNNNTGC	4 cut(s)	1396, 1430, 1445, 1479
BciT130I	CCWGG	2 cut(s)	433, 932
BclI	TGATCA	1 cut(s)	1318
BcoDI	GTCTC	2 cut(s)	4, 1389
BfaI	CTAG	6 cut(s)	375, 489, 738, 1116, 1584, 1611
BfmI	CTRYAG	1 cut(s)	889
BglII	AGATCT	3 cut(s)	166, 1084, 1499
BisI	GCNGC	6 cut(s)	117, 138, 699, 1326, 1388, 1535
BlsI	GCNGC	6 cut(s)	118, 139, 700, 1327, 1389, 1536
Bme1390I	CCNGG	2 cut(s)	433, 932
BmrFI	CCNGG	2 cut(s)	433, 932
BmsI	GCATC	4 cut(s)	710, 1184, 1521, 1656
BplI	GAGNNNNNCTC	2 cut(s)	1565, 1597
BpmI	CTGGAG	1 cut(s)	620
BpuEI	CTTGAG	4 cut(s)	29, 233, 743, 1559
BsaBI	GATNNNNATC	1 cut(s)	905
BsaJI	CCNNGG	2 cut(s)	1179, 1469
Bsc4I	CCNNNNNNNGG	3 cut(s)	502, 965, 1712
Bse1I	ACTGG	1 cut(s)	1069
Bse3DI	GCAATG	1 cut(s)	669
Bse8I	GATNNNNATC	1 cut(s)	905
BseBI	CCWGG	2 cut(s)	433, 932
BseDI	CCNNGG	2 cut(s)	1179, 1469
BseGI	GGATG	5 cut(s)	780, 1175, 1207, 1359, 1432
BseJI	GATNNNNATC	1 cut(s)	905
BseLI	CCNNNNNNNGG	3 cut(s)	502, 965, 1712
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	1 cut(s)	1494
BseNI	ACTGG	1 cut(s)	1069
BseRI	GAGGAG	1 cut(s)	641
BseXI	GCAGC	6 cut(s)	103, 124, 685, 1337, 1399, 1521
BsgI	GTGCAG	2 cut(s)	1436, 1570
BsiHKAI	GWGCWC	1 cut(s)	651
BslFI	GGGAC	4 cut(s)	176, 477, 616, 1288
BslI	CCNNNNNNNGG	3 cut(s)	502, 965, 1712
BsmAI	GTCTC	2 cut(s)	4, 1389
BsmBI	CGTCTC	1 cut(s)	4
BsmFI	GGGAC	4 cut(s)	176, 477, 616, 1288
BsmI	GAATGC	3 cut(s)	580, 1343, 1468
Bsp1286I	GDGCHC	1 cut(s)	651
Bsp1407I	TGTACA	1 cut(s)	271
Bsp143I	GATC	8 cut(s)	166, 595, 616, 906, 1084, 1318, 1401, 1499
Bsp19I	CCATGG	1 cut(s)	1179
BspACI	CCGC	2 cut(s)	158, 203
BspCNI	CTCAG	1 cut(s)	1495
BspHI	TCATGA	1 cut(s)	1660
BspMAI	CTGCAG	1 cut(s)	893
BspPI	GGATC	1 cut(s)	624
BspQI	GCTCTTC	1 cut(s)	596
BsrDI	GCAATG	1 cut(s)	669
BsrGI	TGTACA	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	1069
BssECI	CCNNGG	2 cut(s)	1179, 1469
BssMI	GATC	8 cut(s)	166, 595, 616, 906, 1084, 1318, 1401, 1499
BssT1I	CCWWGG	2 cut(s)	1179, 1469
Bst2UI	CCWGG	2 cut(s)	433, 932
Bst4CI	ACNGT	2 cut(s)	940, 1719
Bst6I	CTCTTC	4 cut(s)	2, 596, 1045, 1625
BstAUI	TGTACA	1 cut(s)	271
BstC8I	GCNNGC	2 cut(s)	660, 1343
BstDEI	CTNAG	4 cut(s)	1102, 1231, 1391, 1503
BstDSI	CCRYGG	1 cut(s)	1179
BstF5I	GGATG	5 cut(s)	780, 1175, 1207, 1359, 1432
BstKTI	GATC	8 cut(s)	169, 598, 619, 909, 1087, 1321, 1404, 1502
BstMAI	GTCTC	2 cut(s)	4, 1389
BstMBI	GATC	8 cut(s)	166, 595, 616, 906, 1084, 1318, 1401, 1499
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 134, 646, 655, 1112, 1387
BstNI	CCWGG	2 cut(s)	433, 932
BstNSI	RCATGY	2 cut(s)	662, 1345
BstSCI	CCNGG	2 cut(s)	431, 930
BstSFI	CTRYAG	1 cut(s)	889
BstV1I	GCAGC	6 cut(s)	103, 124, 685, 1337, 1399, 1521
BstX2I	RGATCY	4 cut(s)	166, 616, 1084, 1499
BstYI	RGATCY	4 cut(s)	166, 616, 1084, 1499
BtgI	CCRYGG	1 cut(s)	1179
BtsCI	GGATG	5 cut(s)	780, 1175, 1207, 1359, 1432
BtsI	GCAGTG	2 cut(s)	748, 1083
BtsIMutI	CAGTG	2 cut(s)	748, 1083
Cac8I	GCNNGC	2 cut(s)	660, 1343
CciI	TCATGA	1 cut(s)	1660
Csp6I	GTAC	5 cut(s)	74, 272, 449, 769, 1361
CviQI	GTAC	5 cut(s)	74, 272, 449, 769, 1361
DdeI	CTNAG	4 cut(s)	1102, 1231, 1391, 1503
DpnI	GATC	8 cut(s)	168, 597, 618, 908, 1086, 1320, 1403, 1501
DpnII	GATC	8 cut(s)	166, 595, 616, 906, 1084, 1318, 1401, 1499
Eam1104I	CTCTTC	4 cut(s)	2, 596, 1045, 1625
EarI	CTCTTC	4 cut(s)	2, 596, 1045, 1625
Ecl136II	GAGCTC	1 cut(s)	649
Eco130I	CCWWGG	2 cut(s)	1179, 1469
Eco24I	GRGCYC	1 cut(s)	651
Eco32I	GATATC	1 cut(s)	1137
Eco53kI	GAGCTC	1 cut(s)	649
Eco57I	CTGAAG	1 cut(s)	1128
EcoICRI	GAGCTC	1 cut(s)	649
EcoRI	GAATTC	2 cut(s)	520, 1097
EcoRII	CCWGG	2 cut(s)	431, 930
EcoRV	GATATC	1 cut(s)	1137
EcoT14I	CCWWGG	2 cut(s)	1179, 1469
EcoT22I	ATGCAT	2 cut(s)	660, 1343
EcoT38I	GRGCYC	1 cut(s)	651
ErhI	CCWWGG	2 cut(s)	1179, 1469
Esp3I	CGTCTC	1 cut(s)	4
FaqI	GGGAC	4 cut(s)	176, 477, 616, 1288
FbaI	TGATCA	1 cut(s)	1318
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	6 cut(s)	117, 138, 699, 1326, 1388, 1535
FokI	GGATG	5 cut(s)	767, 1162, 1214, 1366, 1439
FriOI	GRGCYC	1 cut(s)	651
Fsp4HI	GCNGC	6 cut(s)	117, 138, 699, 1326, 1388, 1535
FspBI	CTAG	6 cut(s)	375, 489, 738, 1116, 1584, 1611
GluI	GCNGC	6 cut(s)	117, 138, 699, 1326, 1388, 1535
GsuI	CTGGAG	1 cut(s)	620
HindIII	AAGCTT	2 cut(s)	437, 1311
HinfI	GANTC	7 cut(s)	154, 228, 366, 464, 822, 1256, 1664
HphI	GGTGA	3 cut(s)	1471, 1540, 1606
Hpy166II	GTNNAC	2 cut(s)	51, 1715
Hpy188III	TCNNGA	5 cut(s)	212, 517, 760, 1405, 1661
Hpy8I	GTNNAC	2 cut(s)	51, 1715
HpyAV	CCTTC	7 cut(s)	554, 579, 836, 1002, 1012, 1402, 1594
HpyCH4III	ACNGT	2 cut(s)	940, 1719
HpyCH4IV	ACGT	2 cut(s)	836, 1711
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 134, 646, 655, 1112, 1387
HpyF3I	CTNAG	4 cut(s)	1102, 1231, 1391, 1503
HpySE526I	ACGT	2 cut(s)	836, 1711
Ksp22I	TGATCA	1 cut(s)	1318
Kzo9I	GATC	8 cut(s)	166, 595, 616, 906, 1084, 1318, 1401, 1499
LguI	GCTCTTC	1 cut(s)	596
LmnI	GCTCC	1 cut(s)	654
Lsp1109I	GCAGC	6 cut(s)	103, 124, 685, 1337, 1399, 1521
LweI	GCATC	4 cut(s)	710, 1184, 1521, 1656
MaeI	CTAG	6 cut(s)	375, 489, 738, 1116, 1584, 1611
MaeII	ACGT	2 cut(s)	836, 1711
MaeIII	GTNAC	5 cut(s)	545, 710, 877, 1051, 1118
MalI	GATC	8 cut(s)	168, 597, 618, 908, 1086, 1320, 1403, 1501
MboI	GATC	8 cut(s)	166, 595, 616, 906, 1084, 1318, 1401, 1499
MfeI	CAATTG	3 cut(s)	601, 1382, 1676
MflI	RGATCY	4 cut(s)	166, 616, 1084, 1499
MhlI	GDGCHC	1 cut(s)	651
MlyI	GAGTC	2 cut(s)	458, 816
MmeI	TCCRAC	1 cut(s)	1129
Mph1103I	ATGCAT	2 cut(s)	660, 1343
MroXI	GAANNNNTTC	1 cut(s)	1022
MseI	TTAA	4 cut(s)	393, 953, 1349, 1436
MslI	CAYNNNNRTG	1 cut(s)	34
MspR9I	CCNGG	2 cut(s)	433, 932
MunI	CAATTG	3 cut(s)	601, 1382, 1676
Mva1269I	GAATGC	3 cut(s)	580, 1343, 1468
MvaI	CCWGG	2 cut(s)	433, 932
MwoI	GCNNNNNNNGC	6 cut(s)	125, 134, 646, 655, 1112, 1387
NcoI	CCATGG	1 cut(s)	1179
NdeII	GATC	8 cut(s)	166, 595, 616, 906, 1084, 1318, 1401, 1499
NmuCI	GTSAC	2 cut(s)	545, 1118
NsiI	ATGCAT	2 cut(s)	660, 1343
NspI	RCATGY	2 cut(s)	662, 1345
PaeI	GCATGC	2 cut(s)	662, 1345
PagI	TCATGA	1 cut(s)	1660
PciSI	GCTCTTC	1 cut(s)	596
PctI	GAATGC	3 cut(s)	580, 1343, 1468
PdmI	GAANNNNTTC	1 cut(s)	1022
PfeI	GAWTC	5 cut(s)	154, 228, 366, 1256, 1664
PflMI	CCANNNNNTGG	2 cut(s)	502, 1712
PfoI	TCCNGGA	1 cut(s)	431
PkrI	GCNGC	6 cut(s)	118, 139, 700, 1327, 1389, 1536
PleI	GAGTC	2 cut(s)	458, 816
PpsI	GAGTC	2 cut(s)	458, 816
PshBI	ATTAAT	1 cut(s)	1436
PsiI	TTATAA	1 cut(s)	567
Psp124BI	GAGCTC	1 cut(s)	651
Psp6I	CCWGG	2 cut(s)	431, 930
PspGI	CCWGG	2 cut(s)	431, 930
PstI	CTGCAG	1 cut(s)	893
PsuI	RGATCY	4 cut(s)	166, 616, 1084, 1499
RsaI	GTAC	5 cut(s)	75, 273, 450, 770, 1362
RsaNI	GTAC	5 cut(s)	74, 272, 449, 769, 1361
RseI	CAYNNNNRTG	1 cut(s)	34
SacI	GAGCTC	1 cut(s)	651
SapI	GCTCTTC	1 cut(s)	596
SaqAI	TTAA	4 cut(s)	393, 953, 1349, 1436
SatI	GCNGC	6 cut(s)	117, 138, 699, 1326, 1388, 1535
Sau3AI	GATC	8 cut(s)	166, 595, 616, 906, 1084, 1318, 1401, 1499
SchI	GAGTC	2 cut(s)	458, 816
ScrFI	CCNGG	2 cut(s)	433, 932
SduI	GDGCHC	1 cut(s)	651
SfaNI	GCATC	4 cut(s)	710, 1184, 1521, 1656
SfcI	CTRYAG	1 cut(s)	889
SmiMI	CAYNNNNRTG	1 cut(s)	34
SmlI	CTYRAG	4 cut(s)	44, 212, 758, 1538
SmoI	CTYRAG	4 cut(s)	44, 212, 758, 1538
SphI	GCATGC	2 cut(s)	662, 1345
SsiI	CCGC	2 cut(s)	158, 203
SspMI	CTAG	6 cut(s)	375, 489, 738, 1116, 1584, 1611
SstI	GAGCTC	1 cut(s)	651
StyD4I	CCNGG	2 cut(s)	431, 930
StyI	CCWWGG	2 cut(s)	1179, 1469
TaaI	ACNGT	2 cut(s)	940, 1719
TaiI	ACGT	2 cut(s)	839, 1714
TaqI	TCGA	2 cut(s)	594, 856
TatI	WGTACW	3 cut(s)	73, 271, 448
TfiI	GAWTC	5 cut(s)	154, 228, 366, 1256, 1664
Tru1I	TTAA	4 cut(s)	393, 953, 1349, 1436
Tru9I	TTAA	4 cut(s)	393, 953, 1349, 1436
TscAI	CASTG	2 cut(s)	748, 1083
TseFI	GTSAC	2 cut(s)	545, 1118
TseI	GCWGC	6 cut(s)	116, 137, 698, 1325, 1387, 1534
Tsp45I	GTSAC	2 cut(s)	545, 1118
TspDTI	ATGAA	6 cut(s)	339, 468, 573, 680, 828, 1643
TspGWI	ACGGA	1 cut(s)	981
TspRI	CASTG	2 cut(s)	748, 1083
Van91I	CCANNNNNTGG	2 cut(s)	502, 1712
VspI	ATTAAT	1 cut(s)	1436
XapI	RAATTY	5 cut(s)	131, 246, 252, 520, 1097
XceI	RCATGY	2 cut(s)	662, 1345
XmiI	GTMKAC	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	1022
XspI	CTAG	6 cut(s)	375, 489, 738, 1116, 1584, 1611
Zsp2I	ATGCAT	2 cut(s)	660, 1343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.