FvH4_7g08860

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
8647302 .. 8650118
2817 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08860.t1

Sequence Viewer

Length: 987 bp
ATGTCCGGAGCTCCACCGCCGCCGTTACCAACCTCCTCCACGTCACCACCACCACCACCACCTCACCGCTCGTTAACCGTCAAGACTCTAAGTCCGAGCATTCTCATCATCCTCCTCATCGTCGTCGTCACCGTCGTGGCCTCATTCTCGCTCTGCCGAATCCTCCGCTGCATCAACAACCGCTTCCTCCGCCACGTCAGCTCTTCCTCCGTCGACAACGGTTCCACGCGCGTCTCCAGCCGGCGAGTCTCTCCGGCCGAAACCTCCGCCGCGGTCTCCGATCCCGTCGCCTCGCTCCCCGTCTTCACCTTCTCCACCATCAAGCGCCGCCGCGAGTCCTCCACCGCCGTCGTCGCTGCAGACTGCGCCGTCTGCCTCTCCAAGTTCGAGCACGACGATCAGCTCCGGTTGCTTCCGCTGTGCTGCCACGCCTTCCACGTATCATGCATCGACACGTGGCTCCGCTCGCAGCAGACCTGCCCGCTCTGCCGGTCGCCGATTTCGGCCTCGGACTCCGAGCTCATGACGCTCGTCGAGAATGCAGGCTCCTCCATCCGCGGCGGCGGCGACAGCTTCCGCCTCGAGATTGGCAGCGTCAGCCGCCGCCAAACGACGACGTCCAACTCCAGCGCCCGGCGCTCCTACTCCATCGGATCGTTCGACTACCTCGTCGACGACGAATCGGAGGTCCAGCTCACCAATGCTAGAAACGGCTCGTCTGACCGGAAAGAGGAGGTGATCGTCGTTCTCGGCGAGCTCCCGCCGCCGTTGCCGTCGGAGGCCGCCAGTCTAGCTGCTGACGTGGCAAACGGTCGGAGCTGGCTTAAGGATTTCGTCGACAGGCTATCCAGCTCTTCTTTACGAAGCTCAGGCAGATTCTTTACCGGGAGTAGCCGTCGGAGCGAGATAGGCGGAGAGTGGATATCGGAGTCCGGCCAACTCGGCGTGGAGTTCTCCGAGTATTTCCGGTGGTTATCGGAGGTATGA

Protein Analysis

329

Amino Acids

35.5

Weight (kDa)

7.57

Isoelectric Point (pI)

75.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 121 - 164 1.9e-13 Ring finger domain
zf-RING_11 PF17123 121 - 150 8.5e-09 RING-like zinc finger
zf-rbx1 PF12678 131 - 164 6.6e-08 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 368, 668
AatII GACGTC 1 cut(s) 620
Acc36I ACCTGC 1 cut(s) 485
AccBSI CCGCTC 3 cut(s) 69, 465, 484
AccI GTMKAC 3 cut(s) 213, 672, 837
AccII CGCG 5 cut(s) 229, 231, 272, 333, 558
AccIII TCCGGA 1 cut(s) 5
AclWI GGATC 2 cut(s) 275, 661
AcoI YGGCCR 2 cut(s) 255, 934
AcvI CACGTG 1 cut(s) 456
AcyI GRCGYC 1 cut(s) 617
AfiI CCNNNNNNNGG 2 cut(s) 633, 730
AflII CTTAAG 1 cut(s) 824
AflIII ACRYGT 1 cut(s) 453
AhdI GACNNNNNGTC 1 cut(s) 90
AjiI CACGTC 3 cut(s) 42, 196, 802
AleI CACNNNNGTG 1 cut(s) 134
Alw21I GWGCWC 4 cut(s) 13, 393, 522, 759
Alw26I GTCTC 3 cut(s) 238, 253, 280
AlwI GGATC 2 cut(s) 275, 661
Ama87I CYCGRG 1 cut(s) 581
Aor13HI TCCGGA 1 cut(s) 5
AoxI GGCC 5 cut(s) 138, 255, 504, 780, 934
ApeKI GCWGC 6 cut(s) 168, 356, 423, 469, 591, 794
ArsI GACNNNNNNTTYG 2 cut(s) 672, 704
AspLEI GCGC 5 cut(s) 231, 327, 368, 632, 639
AspS9I GGNCC 1 cut(s) 688
AsuC2I CCSGG 2 cut(s) 634, 886
AsuHPI GGTGA 6 cut(s) 36, 56, 121, 298, 688, 748
AvaI CYCGRG 1 cut(s) 581
AvaII GGWCC 1 cut(s) 688
BanII GRGCYC 3 cut(s) 13, 522, 759
BbrPI CACGTG 1 cut(s) 456
BbsI GAAGAC 1 cut(s) 295
Bbv12I GWGCWC 4 cut(s) 13, 393, 522, 759
BbvI GCAGC 6 cut(s) 155, 343, 410, 481, 603, 781
BccI CCATC 3 cut(s) 326, 560, 656
BceAI ACGGC 7 cut(s) 7, 332, 353, 727, 751, 757, 879
BcnI CCSGG 2 cut(s) 634, 886
BcoDI GTCTC 3 cut(s) 238, 253, 280
BfaI CTAG 2 cut(s) 705, 791
BfmI CTRYAG 1 cut(s) 357
BfoI RGCGCY 3 cut(s) 328, 633, 640
BfrI CTTAAG 1 cut(s) 824
BfuAI ACCTGC 1 cut(s) 485
BglI GCCNNNNNGGC 1 cut(s) 942
Bme1390I CCNGG 2 cut(s) 634, 886
Bme18I GGWCC 1 cut(s) 688
BmeRI GACNNNNNGTC 1 cut(s) 90
BmeT110I CYCGRG 1 cut(s) 581
BmgBI CACGTC 3 cut(s) 42, 196, 802
BmgT120I GGNCC 1 cut(s) 688
BmiI GGNNCC 3 cut(s) 223, 461, 547
BmrFI CCNGG 2 cut(s) 634, 886
BmsI GCATC 2 cut(s) 180, 456
BoxI GACNNNNGTC 1 cut(s) 530
BpiI GAAGAC 1 cut(s) 295
BpmI CTGGAG 2 cut(s) 220, 610
Bpu10I CCTNAGC 1 cut(s) 868
BpuMI CCSGG 2 cut(s) 634, 886
BsaAI YACGTR 2 cut(s) 439, 456
BsaHI GRCGYC 1 cut(s) 617
BsaI GGTCTC 1 cut(s) 280
BsaJI CCNNGG 3 cut(s) 270, 507, 556
BsaWI WCCGGW 4 cut(s) 5, 405, 723, 966
BsaXI ACNNNNNCTCC 2 cut(s) 880, 910
Bsc4I CCNNNNNNNGG 2 cut(s) 633, 730
Bse118I RCCGGY 2 cut(s) 240, 489
Bse1I ACTGG 1 cut(s) 786
BseAI TCCGGA 1 cut(s) 5
BseDI CCNNGG 3 cut(s) 270, 507, 556
BseGI GGATG 2 cut(s) 108, 552
BseLI CCNNNNNNNGG 2 cut(s) 633, 730
BseMII CTCAG 1 cut(s) 882
BseNI ACTGG 1 cut(s) 786
BseRI GAGGAG 4 cut(s) 25, 104, 538, 746
BseX3I CGGCCG 1 cut(s) 255
BseXI GCAGC 6 cut(s) 155, 343, 410, 481, 603, 781
Bsh1236I CGCG 5 cut(s) 229, 231, 272, 333, 558
Bsh1285I CGRYCG 3 cut(s) 258, 494, 814
BshFI GGCC 5 cut(s) 140, 257, 506, 782, 936
BsiEI CGRYCG 3 cut(s) 258, 494, 814
BsiHKAI GWGCWC 4 cut(s) 13, 393, 522, 759
BsiHKCI CYCGRG 1 cut(s) 581
BslI CCNNNNNNNGG 2 cut(s) 633, 730
BsmAI GTCTC 3 cut(s) 238, 253, 280
BsmBI CGTCTC 1 cut(s) 238
BsmI GAATGC 2 cut(s) 99, 544
BsnI GGCC 5 cut(s) 140, 257, 506, 782, 936
Bso31I GGTCTC 1 cut(s) 280
BsoBI CYCGRG 1 cut(s) 581
Bsp1286I GDGCHC 4 cut(s) 13, 393, 522, 759
Bsp13I TCCGGA 1 cut(s) 5
Bsp143I GATC 4 cut(s) 280, 397, 653, 738
BspANI GGCC 5 cut(s) 140, 257, 506, 782, 936
BspCNI CTCAG 1 cut(s) 881
BspEI TCCGGA 1 cut(s) 5
BspFNI CGCG 5 cut(s) 229, 231, 272, 333, 558
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 3 cut(s) 223, 461, 547
BspMAI CTGCAG 1 cut(s) 361
BspMI ACCTGC 1 cut(s) 485
BspPI GGATC 2 cut(s) 275, 661
BspQI GCTCTTC 2 cut(s) 208, 859
BspTI CTTAAG 1 cut(s) 824
BspTNI GGTCTC 1 cut(s) 280
BsrBI CCGCTC 3 cut(s) 69, 465, 484
BsrFI RCCGGY 2 cut(s) 240, 489
BsrI ACTGG 1 cut(s) 786
BssAI RCCGGY 2 cut(s) 240, 489
BssECI CCNNGG 3 cut(s) 270, 507, 556
BssMI GATC 4 cut(s) 280, 397, 653, 738
BssNI GRCGYC 1 cut(s) 617
Bst4CI ACNGT 4 cut(s) 79, 133, 221, 812
Bst6I CTCTTC 2 cut(s) 208, 859
BstACI GRCGYC 1 cut(s) 617
BstAFI CTTAAG 1 cut(s) 824
BstBAI YACGTR 2 cut(s) 439, 456
BstC8I GCNNGC 6 cut(s) 242, 467, 482, 544, 755, 821
BstDEI CTNAG 2 cut(s) 89, 868
BstDSI CCRYGG 2 cut(s) 270, 556
BstF5I GGATG 2 cut(s) 108, 552
BstFNI CGCG 5 cut(s) 229, 231, 272, 333, 558
BstH2I RGCGCY 3 cut(s) 328, 633, 640
BstHHI GCGC 5 cut(s) 231, 327, 368, 632, 639
BstKTI GATC 4 cut(s) 283, 400, 656, 741
BstMAI GTCTC 3 cut(s) 238, 253, 280
BstMBI GATC 4 cut(s) 280, 397, 653, 738
BstMCI CGRYCG 3 cut(s) 258, 494, 814
BstPAI GACNNNNGTC 1 cut(s) 530
BstSCI CCNGG 2 cut(s) 632, 884
BstSFI CTRYAG 1 cut(s) 357
BstUI CGCG 5 cut(s) 229, 231, 272, 333, 558
BstV1I GCAGC 6 cut(s) 155, 343, 410, 481, 603, 781
BstV2I GAAGAC 1 cut(s) 295
BstZI CGGCCG 1 cut(s) 255
BsuRI GGCC 5 cut(s) 140, 257, 506, 782, 936
BtgI CCRYGG 2 cut(s) 270, 556
BtrI CACGTC 3 cut(s) 42, 196, 802
BtsCI GGATG 2 cut(s) 108, 552
BveI ACCTGC 1 cut(s) 485
Cac8I GCNNGC 6 cut(s) 242, 467, 482, 544, 755, 821
CciI TCATGA 1 cut(s) 522
CfoI GCGC 5 cut(s) 231, 327, 368, 632, 639
Cfr10I RCCGGY 2 cut(s) 240, 489
Cfr13I GGNCC 1 cut(s) 688
Cfr42I CCGCGG 2 cut(s) 273, 559
CseI GACGC 3 cut(s) 220, 535, 583
CviAII CATG 2 cut(s) 444, 523
DdeI CTNAG 2 cut(s) 89, 868
DpnI GATC 4 cut(s) 282, 399, 655, 740
DpnII GATC 4 cut(s) 280, 397, 653, 738
DrdI GACNNNNNNGTC 2 cut(s) 368, 668
DriI GACNNNNNGTC 1 cut(s) 90
DseDI GACNNNNNNGTC 2 cut(s) 368, 668
EaeI YGGCCR 2 cut(s) 255, 934
EagI CGGCCG 1 cut(s) 255
Eam1104I CTCTTC 2 cut(s) 208, 859
Eam1105I GACNNNNNGTC 1 cut(s) 90
EarI CTCTTC 2 cut(s) 208, 859
EciI GGCGGA 4 cut(s) 179, 256, 566, 927
Ecl136II GAGCTC 3 cut(s) 11, 520, 757
EclXI CGGCCG 1 cut(s) 255
Eco24I GRGCYC 3 cut(s) 13, 522, 759
Eco31I GGTCTC 1 cut(s) 280
Eco32I GATATC 1 cut(s) 924
Eco47I GGWCC 1 cut(s) 688
Eco52I CGGCCG 1 cut(s) 255
Eco53kI GAGCTC 3 cut(s) 11, 520, 757
Eco72I CACGTG 1 cut(s) 456
Eco88I CYCGRG 1 cut(s) 581
EcoICRI GAGCTC 3 cut(s) 11, 520, 757
EcoRV GATATC 1 cut(s) 924
EcoT22I ATGCAT 1 cut(s) 449
EcoT38I GRGCYC 3 cut(s) 13, 522, 759
Esp3I CGTCTC 1 cut(s) 238
FaeI CATG 2 cut(s) 447, 526
FaiI YATR 3 cut(s) 445, 524, 985
FatI CATG 2 cut(s) 443, 522
FauI CCCGC 2 cut(s) 489, 768
FblI GTMKAC 3 cut(s) 213, 672, 837
FokI GGATG 2 cut(s) 95, 539
FriOI GRGCYC 3 cut(s) 13, 522, 759
FspBI CTAG 2 cut(s) 705, 791
GlaI GCGC 5 cut(s) 230, 326, 367, 631, 638
GsuI CTGGAG 2 cut(s) 220, 610
HaeII RGCGCY 3 cut(s) 328, 633, 640
HaeIII GGCC 5 cut(s) 140, 257, 506, 782, 936
HgaI GACGC 3 cut(s) 220, 535, 583
HhaI GCGC 5 cut(s) 231, 327, 368, 632, 639
Hin1I GRCGYC 1 cut(s) 617
Hin1II CATG 2 cut(s) 447, 526
Hin6I GCGC 5 cut(s) 229, 325, 366, 630, 637
HinP1I GCGC 5 cut(s) 229, 325, 366, 630, 637
HincII GTYRAC 4 cut(s) 75, 214, 673, 838
HindII GTYRAC 4 cut(s) 75, 214, 673, 838
HinfI GANTC 8 cut(s) 85, 159, 246, 335, 512, 680, 876, 929
HpaI GTTAAC 1 cut(s) 75
HphI GGTGA 6 cut(s) 36, 56, 121, 298, 688, 748
Hpy166II GTNNAC 4 cut(s) 75, 214, 673, 838
Hpy188III TCNNGA 5 cut(s) 6, 82, 523, 535, 583
Hpy8I GTNNAC 4 cut(s) 75, 214, 673, 838
HpyAV CCTTC 2 cut(s) 319, 442
HpyCH4III ACNGT 4 cut(s) 79, 133, 221, 812
HpyCH4IV ACGT 6 cut(s) 41, 195, 438, 455, 617, 801
HpyCH4V TGCA 4 cut(s) 171, 359, 447, 542
HpyF3I CTNAG 2 cut(s) 89, 868
HpySE526I ACGT 6 cut(s) 41, 195, 438, 455, 617, 801
Hsp92I GRCGYC 1 cut(s) 617
Hsp92II CATG 2 cut(s) 447, 526
HspAI GCGC 5 cut(s) 229, 325, 366, 630, 637
Kpn2I TCCGGA 1 cut(s) 5
KroI GCCGGC 1 cut(s) 240
KroNI GCCGGC 1 cut(s) 242
KspAI GTTAAC 1 cut(s) 75
KspI CCGCGG 2 cut(s) 273, 559
Kzo9I GATC 4 cut(s) 280, 397, 653, 738
LguI GCTCTTC 2 cut(s) 208, 859
Lsp1109I GCAGC 6 cut(s) 155, 343, 410, 481, 603, 781
LweI GCATC 2 cut(s) 180, 456
MaeI CTAG 2 cut(s) 705, 791
MaeII ACGT 6 cut(s) 41, 195, 438, 455, 617, 801
MaeIII GTNAC 3 cut(s) 24, 42, 127
MalI GATC 4 cut(s) 282, 399, 655, 740
MbiI CCGCTC 3 cut(s) 69, 465, 484
MboI GATC 4 cut(s) 280, 397, 653, 738
MboII GAAGA 3 cut(s) 195, 295, 846
MhlI GDGCHC 4 cut(s) 13, 393, 522, 759
MlyI GAGTC 5 cut(s) 79, 255, 344, 506, 938
MmeI TCCRAC 4 cut(s) 645, 756, 794, 878
Mph1103I ATGCAT 1 cut(s) 449
MroI TCCGGA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 240
MseI TTAA 2 cut(s) 74, 825
MslI CAYNNNNRTG 1 cut(s) 134
MspA1I CMGCKG 4 cut(s) 168, 272, 418, 558
MspCI CTTAAG 1 cut(s) 824
MspR9I CCNGG 2 cut(s) 634, 886
Mva1269I GAATGC 2 cut(s) 99, 544
MvnI CGCG 5 cut(s) 229, 231, 272, 333, 558
NaeI GCCGGC 1 cut(s) 242
NciI CCSGG 2 cut(s) 634, 886
NdeII GATC 4 cut(s) 280, 397, 653, 738
NgoMIV GCCGGC 1 cut(s) 240
NlaIII CATG 2 cut(s) 447, 526
NlaIV GGNNCC 3 cut(s) 223, 461, 547
NmeAIII GCCGAG 2 cut(s) 729, 921
NmuCI GTSAC 2 cut(s) 42, 127
NsiI ATGCAT 1 cut(s) 449
OliI CACNNNNGTG 1 cut(s) 134
PaeR7I CTCGAG 1 cut(s) 581
PagI TCATGA 1 cut(s) 522
PciSI GCTCTTC 2 cut(s) 208, 859
PcsI WCGNNNNNNNCGW 8 cut(s) 129, 132, 393, 435, 657, 666, 675, 750
PctI GAATGC 2 cut(s) 99, 544
PdiI GCCGGC 1 cut(s) 242
PfeI GAWTC 3 cut(s) 159, 680, 876
PflFI GACNNNGTC 1 cut(s) 616
PleI GAGTC 5 cut(s) 79, 254, 343, 506, 937
PmaCI CACGTG 1 cut(s) 456
PmlI CACGTG 1 cut(s) 456
PpsI GAGTC 5 cut(s) 79, 254, 343, 506, 937
Ppu21I YACGTR 2 cut(s) 439, 456
PshAI GACNNNNGTC 1 cut(s) 530
Psp124BI GAGCTC 3 cut(s) 13, 522, 759
PspCI CACGTG 1 cut(s) 456
PspN4I GGNNCC 3 cut(s) 223, 461, 547
PspPI GGNCC 1 cut(s) 688
PstI CTGCAG 1 cut(s) 361
PsyI GACNNNGTC 1 cut(s) 616
RseI CAYNNNNRTG 1 cut(s) 134
SacI GAGCTC 3 cut(s) 13, 522, 759
SacII CCGCGG 2 cut(s) 273, 559
SalI GTCGAC 3 cut(s) 212, 671, 836
SapI GCTCTTC 2 cut(s) 208, 859
SaqAI TTAA 2 cut(s) 74, 825
Sau3AI GATC 4 cut(s) 280, 397, 653, 738
Sau96I GGNCC 1 cut(s) 688
SchI GAGTC 5 cut(s) 79, 255, 344, 506, 938
ScrFI CCNGG 2 cut(s) 634, 886
SduI GDGCHC 4 cut(s) 13, 393, 522, 759
SfaNI GCATC 2 cut(s) 180, 456
SfcI CTRYAG 1 cut(s) 357
Sfr274I CTCGAG 1 cut(s) 581
Sfr303I CCGCGG 2 cut(s) 273, 559
SgrBI CCGCGG 2 cut(s) 273, 559
SgrDI CGTCGACG 1 cut(s) 671
SinI GGWCC 1 cut(s) 688
SlaI CTCGAG 1 cut(s) 581
SmiMI CAYNNNNRTG 1 cut(s) 134
SmlI CTYRAG 2 cut(s) 581, 824
SmoI CTYRAG 2 cut(s) 581, 824
SspMI CTAG 2 cut(s) 705, 791
SstI GAGCTC 3 cut(s) 13, 522, 759
StyD4I CCNGG 2 cut(s) 632, 884
TaaI ACNGT 4 cut(s) 79, 133, 221, 812
TaiI ACGT 6 cut(s) 44, 198, 441, 458, 620, 804
TaqI TCGA 8 cut(s) 213, 387, 450, 534, 582, 660, 672, 837
TfiI GAWTC 3 cut(s) 159, 680, 876
Tru1I TTAA 2 cut(s) 74, 825
Tru9I TTAA 2 cut(s) 74, 825
TseFI GTSAC 2 cut(s) 42, 127
TseI GCWGC 6 cut(s) 168, 356, 423, 469, 591, 794
Tsp45I GTSAC 2 cut(s) 42, 127
TspGWI ACGGA 1 cut(s) 199
Tth111I GACNNNGTC 1 cut(s) 616
Vha464I CTTAAG 1 cut(s) 824
VpaK11BI GGWCC 1 cut(s) 688
XhoI CTCGAG 1 cut(s) 581
XmiI GTMKAC 3 cut(s) 213, 672, 837
XspI CTAG 2 cut(s) 705, 791
ZraI GACGTC 1 cut(s) 618
Zsp2I ATGCAT 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.