Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005662

Physical Location & Seq

Genomic Coordinates Forward (+)

61736421 .. 61739867

Gene Structure 3447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015102

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGACTCCCGTCGAAAATGCAGGCTCCTCCTCCCGCGGCGGCGGAGATAGCTTCCGACTCGAGAATGGCAACGGCAGCCGCCGCCAAACAACTACGACGTCCTACTCCAGCGCGCGCCGCTCCTACTCCATCGGATCGTTCGACTACCTCGTCGACGACGACTCCGAGGTCCGATTGTCCAATGCCAGAAACGGCTCGTCTGATCGGAAAGAAGAGGTGATTGTTGTTCTCGTCGAGCTCCAGCCGCCGCTGCCGTCAGAGGCCAATCTAGCTGCTGACGTGGCCTCGGGAAGGAGATGGCTTAAAGAATTCATCAAATTTAAGGCTTACAACTATGAACATGTTCTCAATGAGCATTTCTTCACCTGTACAGTGCTGTATTGGTACAATTTCCTAATTAGTGATACAGATTGTTATCTTTTGAGTATTTTGATCTTATTGAGGCCCTTGAGGAATCCTTCAGCTGATGCAATTCCCATTAAACTCGAGGAACTTGAGAATGTATTCGAACAATCTCCTGACCACATTCCTATGATGCTGGCCAATCCTTATTTTGTGACTATTGAAACTAAAAACACAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

195

Amino Acids

21.98

Weight (kDa)

5.14

Isoelectric Point (pI)

51.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60220
fragaria_vesca	FvH4_7g08860
malus_domestica	MD02G1223200.v1.1 MD07G1091500.v1.1
prunus_persica	Prupe.2G116700_v2.0.a1
pyrus_communis	pycom07g07480 pycom15g32160
rosa_chinensis	RchiOBHm_Chr1g0344271 RchiOBHm_Chr7g0197351
rosa_laevigata	RLG00000003768 RLG00000015102 RLG00000019331 RLG00000025671 RLG00000028912
rosa_multiflora	Rmu_sc0000019.1_g000012 Rmu_sc0000338.1_g000018 Rmu_sc0003703.1_g000004 Rmu_sc0005991.1_g000007 Rmu_sc0016684.1_g000002 Rmu_sc0016685.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309960
rosa_rugosa	Rorug01G0172700
rosa_samantha	Rh1AG188600 Rh1BG155100 Rh1CG174400 Rh2CG262100 Rh3BG248600
rosa_wichuraiana	Rw1G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	149, 167
AatII	GACGTC	1 cut(s)	101
AccBSI	CCGCTC	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	3 cut(s)	36, 113, 115
AciI	CCGC	9 cut(s)	34, 36, 39, 42, 79, 82, 118, 245, 248
AclWI	GGATC	1 cut(s)	142
AcoI	YGGCCR	1 cut(s)	540
AcsI	RAATTY	2 cut(s)	308, 317
AcuI	CTGAAG	1 cut(s)	444
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	2 cut(s)	370, 386
AfiI	CCNNNNNNNGG	1 cut(s)	291
AflIII	ACRYGT	1 cut(s)	340
AgsI	TTSAA	1 cut(s)	566
AjiI	CACGTC	1 cut(s)	280
AluBI	AGCT	4 cut(s)	51, 238, 272, 464
AluI	AGCT	4 cut(s)	51, 238, 272, 464
Alw21I	GWGCWC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	142
Ama87I	CYCGRG	3 cut(s)	59, 286, 485
AoxI	GGCC	4 cut(s)	261, 282, 443, 540
ApeKI	GCWGC	3 cut(s)	75, 250, 272
ApoI	RAATTY	2 cut(s)	308, 317
Asp700I	GAANNNNTTC	2 cut(s)	342, 503
AspLEI	GCGC	3 cut(s)	113, 115, 117
AspS9I	GGNCC	2 cut(s)	169, 444
AsuHPI	GGTGA	2 cut(s)	229, 355
AsuII	TTCGAA	1 cut(s)	507
AvaI	CYCGRG	3 cut(s)	59, 286, 485
AvaII	GGWCC	1 cut(s)	169
BalI	TGGCCA	1 cut(s)	542
BanII	GRGCYC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	87, 237, 259
BccI	CCATC	2 cut(s)	137, 291
BceAI	ACGGC	3 cut(s)	88, 208, 238
BfaI	CTAG	1 cut(s)	269
Bme18I	GGWCC	1 cut(s)	169
BmeT110I	CYCGRG	3 cut(s)	59, 286, 485
BmgBI	CACGTC	1 cut(s)	280
BmgT120I	GGNCC	2 cut(s)	169, 444
BmiI	GGNNCC	1 cut(s)	25
BmsI	GCATC	2 cut(s)	457, 525
BoxI	GACNNNNGTC	1 cut(s)	8
BpmI	CTGGAG	2 cut(s)	91, 224
Bpu14I	TTCGAA	1 cut(s)	507
BpuEI	CTTGAG	2 cut(s)	469, 515
BsaBI	GATNNNNATC	1 cut(s)	414
BsaHI	GRCGYC	1 cut(s)	98
BsaJI	CCNNGG	3 cut(s)	34, 165, 285
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse8I	GATNNNNATC	1 cut(s)	414
BseDI	CCNNGG	3 cut(s)	34, 165, 285
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	1 cut(s)	291
BsePI	GCGCGC	2 cut(s)	111, 113
BseRI	GAGGAG	2 cut(s)	16, 19
BseXI	GCAGC	3 cut(s)	87, 237, 259
Bsh1236I	CGCG	3 cut(s)	36, 113, 115
BshFI	GGCC	4 cut(s)	263, 284, 445, 542
BsiHKAI	GWGCWC	1 cut(s)	240
BsiHKCI	CYCGRG	3 cut(s)	59, 286, 485
BslI	CCNNNNNNNGG	1 cut(s)	291
BsnI	GGCC	4 cut(s)	263, 284, 445, 542
BsoBI	CYCGRG	3 cut(s)	59, 286, 485
Bsp119I	TTCGAA	1 cut(s)	507
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp1407I	TGTACA	1 cut(s)	368
Bsp143I	GATC	3 cut(s)	134, 202, 432
BspACI	CCGC	9 cut(s)	34, 36, 39, 42, 79, 82, 118, 245, 248
BspANI	GGCC	4 cut(s)	263, 284, 445, 542
BspFNI	CGCG	3 cut(s)	36, 113, 115
BspLI	GGNNCC	1 cut(s)	25
BspPI	GGATC	1 cut(s)	142
BspT104I	TTCGAA	1 cut(s)	507
BsrBI	CCGCTC	1 cut(s)	120
BsrGI	TGTACA	1 cut(s)	368
BssECI	CCNNGG	3 cut(s)	34, 165, 285
BssHII	GCGCGC	2 cut(s)	111, 113
BssMI	GATC	3 cut(s)	134, 202, 432
BssNI	GRCGYC	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	373
Bst6I	CTCTTC	1 cut(s)	207
BstACI	GRCGYC	1 cut(s)	98
BstAUI	TGTACA	1 cut(s)	368
BstBI	TTCGAA	1 cut(s)	507
BstC8I	GCNNGC	4 cut(s)	22, 113, 115, 540
BstDSI	CCRYGG	1 cut(s)	34
BstENI	CCTNNNNNAGG	1 cut(s)	289
BstFNI	CGCG	3 cut(s)	36, 113, 115
BstHHI	GCGC	3 cut(s)	113, 115, 117
BstKTI	GATC	3 cut(s)	137, 205, 435
BstMBI	GATC	3 cut(s)	134, 202, 432
BstMWI	GCNNNNNNNGC	8 cut(s)	48, 75, 81, 117, 244, 250, 269, 281
BstNSI	RCATGY	1 cut(s)	344
BstPAI	GACNNNNGTC	1 cut(s)	8
BstUI	CGCG	3 cut(s)	36, 113, 115
BstV1I	GCAGC	3 cut(s)	87, 237, 259
BsuRI	GGCC	4 cut(s)	263, 284, 445, 542
BtgI	CCRYGG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	4 cut(s)	22, 113, 115, 540
CfoI	GCGC	3 cut(s)	113, 115, 117
Cfr13I	GGNCC	2 cut(s)	169, 444
Cfr42I	CCGCGG	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	369, 385
CviAII	CATG	1 cut(s)	341
CviQI	GTAC	2 cut(s)	369, 385
DpnI	GATC	3 cut(s)	136, 204, 434
DpnII	GATC	3 cut(s)	134, 202, 432
DrdI	GACNNNNNNGTC	2 cut(s)	149, 167
DseDI	GACNNNNNNGTC	2 cut(s)	149, 167
EaeI	YGGCCR	1 cut(s)	540
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	169
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	444
Eco88I	CYCGRG	3 cut(s)	59, 286, 485
EcoICRI	GAGCTC	1 cut(s)	238
EcoNI	CCTNNNNNAGG	1 cut(s)	289
EcoO109I	RGGNCCY	1 cut(s)	444
EcoRI	GAATTC	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	240
FaeI	CATG	1 cut(s)	344
FaiI	YATR	3 cut(s)	336, 342, 533
FatI	CATG	1 cut(s)	340
FauI	CCCGC	1 cut(s)	41
FblI	GTMKAC	1 cut(s)	153
FriOI	GRGCYC	1 cut(s)	240
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	3 cut(s)	112, 114, 116
GsuI	CTGGAG	2 cut(s)	91, 224
HaeIII	GGCC	4 cut(s)	263, 284, 445, 542
HhaI	GCGC	3 cut(s)	113, 115, 117
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	1 cut(s)	344
Hin6I	GCGC	3 cut(s)	111, 113, 115
HinP1I	GCGC	3 cut(s)	111, 113, 115
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	4 cut(s)	4, 57, 161, 454
HphI	GGTGA	2 cut(s)	229, 355
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	7 cut(s)	56, 134, 166, 173, 202, 207, 259
Hpy188III	TCNNGA	3 cut(s)	61, 288, 518
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	6 cut(s)	14, 100, 155, 158, 161, 236
HpyAV	CCTTC	2 cut(s)	285, 468
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4IV	ACGT	2 cut(s)	98, 279
HpyCH4V	TGCA	2 cut(s)	20, 470
HpyF10VI	GCNNNNNNNGC	8 cut(s)	48, 75, 81, 117, 244, 250, 269, 281
HpySE526I	ACGT	2 cut(s)	98, 279
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	1 cut(s)	344
HspAI	GCGC	3 cut(s)	111, 113, 115
KspI	CCGCGG	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	134, 202, 432
LmnI	GCTCC	3 cut(s)	29, 125, 243
LpnPI	CCDG	7 cut(s)	6, 121, 199, 254, 379, 524, 531
Lsp1109I	GCAGC	3 cut(s)	87, 237, 259
LweI	GCATC	2 cut(s)	457, 525
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	2 cut(s)	98, 279
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	3 cut(s)	136, 204, 434
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	3 cut(s)	134, 202, 432
MboII	GAAGA	2 cut(s)	224, 352
MhlI	GDGCHC	1 cut(s)	240
MlsI	TGGCCA	1 cut(s)	542
MluCI	AATT	5 cut(s)	308, 317, 388, 396, 471
MluNI	TGGCCA	1 cut(s)	542
MlyI	GAGTC	2 cut(s)	51, 155
MmeI	TCCRAC	1 cut(s)	79
Mox20I	TGGCCA	1 cut(s)	542
MroXI	GAANNNNTTC	2 cut(s)	342, 503
MscI	TGGCCA	1 cut(s)	542
MseI	TTAA	3 cut(s)	303, 321, 480
MslI	CAYNNNNRTG	1 cut(s)	530
Msp20I	TGGCCA	1 cut(s)	542
MspA1I	CMGCKG	3 cut(s)	36, 250, 464
MvnI	CGCG	3 cut(s)	36, 113, 115
MwoI	GCNNNNNNNGC	8 cut(s)	48, 75, 81, 117, 244, 250, 269, 281
NdeII	GATC	3 cut(s)	134, 202, 432
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	556
NspI	RCATGY	1 cut(s)	344
NspV	TTCGAA	1 cut(s)	507
PaeR7I	CTCGAG	2 cut(s)	59, 485
PauI	GCGCGC	2 cut(s)	111, 113
PciI	ACATGT	1 cut(s)	340
PcsI	WCGNNNNNNNCGW	4 cut(s)	138, 147, 156, 162
PdmI	GAANNNNTTC	2 cut(s)	342, 503
PfeI	GAWTC	1 cut(s)	454
PleI	GAGTC	2 cut(s)	51, 155
PpsI	GAGTC	2 cut(s)	51, 155
PscI	ACATGT	1 cut(s)	340
PshAI	GACNNNNGTC	1 cut(s)	8
Psp124BI	GAGCTC	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	2 cut(s)	169, 444
PspXI	VCTCGAGB	1 cut(s)	485
PteI	GCGCGC	2 cut(s)	111, 113
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	2 cut(s)	370, 386
RsaNI	GTAC	2 cut(s)	369, 385
RseI	CAYNNNNRTG	1 cut(s)	530
SacI	GAGCTC	1 cut(s)	240
SacII	CCGCGG	1 cut(s)	37
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	3 cut(s)	303, 321, 480
Sau3AI	GATC	3 cut(s)	134, 202, 432
Sau96I	GGNCC	2 cut(s)	169, 444
SchI	GAGTC	2 cut(s)	51, 155
SduI	GDGCHC	1 cut(s)	240
SfaNI	GCATC	2 cut(s)	457, 525
Sfr274I	CTCGAG	2 cut(s)	59, 485
Sfr303I	CCGCGG	1 cut(s)	37
SfuI	TTCGAA	1 cut(s)	507
SgrBI	CCGCGG	1 cut(s)	37
SgrDI	CGTCGACG	1 cut(s)	152
SinI	GGWCC	1 cut(s)	169
SlaI	CTCGAG	2 cut(s)	59, 485
SmiMI	CAYNNNNRTG	1 cut(s)	530
SmlI	CTYRAG	4 cut(s)	59, 448, 485, 494
SmoI	CTYRAG	4 cut(s)	59, 448, 485, 494
Sse9I	AATT	5 cut(s)	308, 317, 388, 396, 471
SsiI	CCGC	9 cut(s)	34, 36, 39, 42, 79, 82, 118, 245, 248
SspMI	CTAG	1 cut(s)	269
SstI	GAGCTC	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	373
TaiI	ACGT	2 cut(s)	101, 282
TaqI	TCGA	7 cut(s)	12, 60, 141, 153, 234, 486, 507
TasI	AATT	5 cut(s)	308, 317, 388, 396, 471
TatI	WGTACW	1 cut(s)	368
TauI	GCSGC	7 cut(s)	39, 42, 81, 84, 120, 247, 250
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	3 cut(s)	303, 321, 480
Tru9I	TTAA	3 cut(s)	303, 321, 480
TscAI	CASTG	1 cut(s)	378
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	3 cut(s)	75, 250, 272
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	2 cut(s)	301, 351
TspRI	CASTG	1 cut(s)	378
VpaK11BI	GGWCC	1 cut(s)	169
XagI	CCTNNNNNAGG	1 cut(s)	289
XapI	RAATTY	2 cut(s)	308, 317
XceI	RCATGY	1 cut(s)	344
XhoI	CTCGAG	2 cut(s)	59, 485
XmiI	GTMKAC	1 cut(s)	153
XmnI	GAANNNNTTC	2 cut(s)	342, 503
XspI	CTAG	1 cut(s)	269
ZraI	GACGTC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.