Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005662

Physical Location & Seq

Genomic Coordinates Reverse (-)

30155077 .. 30156075

Gene Structure 999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028912

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTCCGGAGCACCGCCGCCACCGCCACCGCCATTATCAACCTCCACCACCTCTCCACCTCACAACAACCGCTCATTGACCGTGAAAACCTTAAGTCCGAGCATTCTCATCATCCTCCTCATCGTCGTCGTCACCGTGGTGGCTTCATTTTCCCTCTGCCGAATCCTCCGCTGCATCAACAACCGCTTCCTCCGCCACGTCACTCCCTCCTCCGGCGACGACGCACCAGCCGCCTCCTCCAGCCGTCGAGTCTCTCCTGCCGAATCCTCCGCCGCCGATCCCGTCGCCGCGCTCCCGGTCTTCGCCTTCTCCGCCATCAAGAACCGCCGAGCCTCCTCCACTGCCGTCGTCGCCGCCGACTGCGCCGTCTGCCTCTCGAAGTTCGAGCACGACGATCAGCTCCGGCTGCTCCCTCTCTGCTGTCACGCCTTCCACGTCTCGTGCATCGACACGTGGCTCCACTCCCAGCAGACCTGCCCGCTCTGCCGGTCGCCGATTTCCGCTTCCGACTCCGAGCTTATGACTCTCGTCGAGAATGCAGGCTCCTCCTTCCGCGGCAGCCCCGGCGGCGATAGCTTCAGACTCGAGATTGGCAACGTCAGCCGCCGACAAACAACTACGACGTCCAACTCCAGCGCGCGCCGCTCCTACTCCATAGGCTCGTTCGACTACCTGGTCGACGACGACTCGGAGGTCCAATTGTCCAATGCCAGAAACGGCTCGTCTGATAGGAAAGAAGAGGTGATTGTCGTTCTCGGCGAGCCCCCGCCTCCGCCGCTGCCGTCGGAGGCCAGTCTAGCTGCTGACGTGGCCTCGGGAAGGAGCTGGCTTAAAGAATTCGTGGATAGACTCTCCAGCTCTTCTCGACGAAGCTCCGGCAGATTCTTTACCGGCAGTAGCCGTCGGAGTGAAATAGGAGGCACGGGAGAGTGGATATCGGAGTCCGGCCAAGTCGGCGTCGAGTTCTCCGAGTATTTCCGGTGGTTATCGGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

333

Amino Acids

35.62

Weight (kDa)

6.6

Isoelectric Point (pI)

74.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	120 - 163	8.7e-13	Ring finger domain
zf-RING_11	PF17123	120 - 149	8.6e-09	RING-like zinc finger
zf-rbx1	PF12678	130 - 163	3.7e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60220
fragaria_vesca	FvH4_7g08860
malus_domestica	MD02G1223200.v1.1 MD07G1091500.v1.1
prunus_persica	Prupe.2G116700_v2.0.a1
pyrus_communis	pycom07g07480 pycom15g32160
rosa_chinensis	RchiOBHm_Chr1g0344271 RchiOBHm_Chr7g0197351
rosa_laevigata	RLG00000003768 RLG00000015102 RLG00000019331 RLG00000025671 RLG00000028912
rosa_multiflora	Rmu_sc0000019.1_g000012 Rmu_sc0000338.1_g000018 Rmu_sc0003703.1_g000004 Rmu_sc0005991.1_g000007 Rmu_sc0016684.1_g000002 Rmu_sc0016685.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309960
rosa_rugosa	Rorug01G0172700
rosa_samantha	Rh1AG188600 Rh1BG155100 Rh1CG174400 Rh2CG262100 Rh3BG248600
rosa_wichuraiana	Rw1G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	365, 674, 692
AatII	GACGTC	1 cut(s)	626
Acc36I	ACCTGC	1 cut(s)	482
AccBSI	CCGCTC	3 cut(s)	72, 481, 645
AccI	GTMKAC	1 cut(s)	678
AccII	CGCG	4 cut(s)	290, 555, 638, 640
AccIII	TCCGGA	1 cut(s)	5
AclWI	GGATC	1 cut(s)	272
AcoI	YGGCCR	1 cut(s)	946
AcsI	RAATTY	1 cut(s)	836
AcuI	CTGAAG	1 cut(s)	562
AcvI	CACGTG	1 cut(s)	453
AcyI	GRCGYC	2 cut(s)	623, 957
AfiI	CCNNNNNNNGG	2 cut(s)	212, 819
AflII	CTTAAG	1 cut(s)	91
AflIII	ACRYGT	1 cut(s)	450
AjiI	CACGTC	3 cut(s)	199, 436, 808
AjnI	CCWGG	1 cut(s)	672
AleI	CACNNNNGTG	1 cut(s)	137
AluBI	AGCT	7 cut(s)	400, 517, 576, 800, 825, 858, 873
AluI	AGCT	7 cut(s)	400, 517, 576, 800, 825, 858, 873
Alw21I	GWGCWC	2 cut(s)	13, 390
Alw26I	GTCTC	2 cut(s)	256, 442
AlwI	GGATC	1 cut(s)	272
Ama87I	CYCGRG	2 cut(s)	584, 814
Aor13HI	TCCGGA	1 cut(s)	5
AoxI	GGCC	3 cut(s)	789, 810, 946
ApeKI	GCWGC	5 cut(s)	171, 406, 558, 778, 800
ApoI	RAATTY	1 cut(s)	836
AspLEI	GCGC	5 cut(s)	292, 365, 638, 640, 642
AspS9I	GGNCC	1 cut(s)	694
AsuC2I	CCSGG	2 cut(s)	296, 564
AsuHPI	GGTGA	2 cut(s)	124, 754
AvaI	CYCGRG	2 cut(s)	584, 814
AvaII	GGWCC	1 cut(s)	694
BanII	GRGCYC	1 cut(s)	765
BauI	CACGAG	1 cut(s)	439
BbrPI	CACGTG	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	292
Bbv12I	GWGCWC	2 cut(s)	13, 390
BbvI	GCAGC	5 cut(s)	158, 393, 570, 765, 787
BccI	CCATC	1 cut(s)	323
BceAI	ACGGC	6 cut(s)	228, 329, 350, 733, 766, 885
BciT130I	CCWGG	1 cut(s)	674
BcnI	CCSGG	2 cut(s)	296, 564
BcoDI	GTCTC	2 cut(s)	256, 442
BfaI	CTAG	1 cut(s)	797
BfrI	CTTAAG	1 cut(s)	91
BfuAI	ACCTGC	1 cut(s)	482
BglI	GCCNNNNNGGC	2 cut(s)	567, 954
Bme1390I	CCNGG	3 cut(s)	296, 564, 674
Bme18I	GGWCC	1 cut(s)	694
BmeT110I	CYCGRG	2 cut(s)	584, 814
BmgBI	CACGTC	3 cut(s)	199, 436, 808
BmgT120I	GGNCC	1 cut(s)	694
BmiI	GGNNCC	2 cut(s)	458, 544
BmrFI	CCNGG	3 cut(s)	296, 564, 674
BmsI	GCATC	2 cut(s)	183, 453
BoxI	GACNNNNGTC	1 cut(s)	527
BpiI	GAAGAC	1 cut(s)	292
BpmI	CTGGAG	3 cut(s)	223, 616, 838
BpuMI	CCSGG	2 cut(s)	296, 564
BsaAI	YACGTR	1 cut(s)	453
BsaHI	GRCGYC	2 cut(s)	623, 957
BsaJI	CCNNGG	4 cut(s)	135, 553, 562, 813
BsaWI	WCCGGW	2 cut(s)	5, 978
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 819
Bse118I	RCCGGY	2 cut(s)	486, 890
Bse1I	ACTGG	1 cut(s)	792
BseAI	TCCGGA	1 cut(s)	5
BseBI	CCWGG	1 cut(s)	674
BseDI	CCNNGG	4 cut(s)	135, 553, 562, 813
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	212, 819
BseNI	ACTGG	1 cut(s)	792
BsePI	GCGCGC	2 cut(s)	636, 638
BseRI	GAGGAG	5 cut(s)	107, 199, 226, 325, 535
BseXI	GCAGC	5 cut(s)	158, 393, 570, 765, 787
BseYI	CCCAGC	1 cut(s)	465
Bsh1236I	CGCG	4 cut(s)	290, 555, 638, 640
Bsh1285I	CGRYCG	1 cut(s)	491
BshFI	GGCC	3 cut(s)	791, 812, 948
BsiEI	CGRYCG	1 cut(s)	491
BsiHKAI	GWGCWC	2 cut(s)	13, 390
BsiHKCI	CYCGRG	2 cut(s)	584, 814
BslI	CCNNNNNNNGG	2 cut(s)	212, 819
BsmAI	GTCTC	2 cut(s)	256, 442
BsmBI	CGTCTC	1 cut(s)	442
BsmI	GAATGC	2 cut(s)	102, 541
BsnI	GGCC	3 cut(s)	791, 812, 948
BsoBI	CYCGRG	2 cut(s)	584, 814
Bsp1286I	GDGCHC	3 cut(s)	13, 390, 765
Bsp13I	TCCGGA	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	277, 394
BspANI	GGCC	3 cut(s)	791, 812, 948
BspEI	TCCGGA	1 cut(s)	5
BspFNI	CGCG	4 cut(s)	290, 555, 638, 640
BspLI	GGNNCC	2 cut(s)	458, 544
BspMI	ACCTGC	1 cut(s)	482
BspPI	GGATC	1 cut(s)	272
BspQI	GCTCTTC	1 cut(s)	865
BspTI	CTTAAG	1 cut(s)	91
BsrBI	CCGCTC	3 cut(s)	72, 481, 645
BsrFI	RCCGGY	2 cut(s)	486, 890
BsrI	ACTGG	1 cut(s)	792
BssAI	RCCGGY	2 cut(s)	486, 890
BssECI	CCNNGG	4 cut(s)	135, 553, 562, 813
BssHII	GCGCGC	2 cut(s)	636, 638
BssMI	GATC	2 cut(s)	277, 394
BssNI	GRCGYC	2 cut(s)	623, 957
BssSI	CACGAG	1 cut(s)	439
Bst2BI	CACGAG	1 cut(s)	439
Bst2UI	CCWGG	1 cut(s)	674
Bst4CI	ACNGT	2 cut(s)	82, 136
Bst6I	CTCTTC	2 cut(s)	732, 865
BstACI	GRCGYC	2 cut(s)	623, 957
BstAFI	CTTAAG	1 cut(s)	91
BstBAI	YACGTR	1 cut(s)	453
BstC8I	GCNNGC	6 cut(s)	479, 541, 638, 640, 761, 827
BstDSI	CCRYGG	2 cut(s)	135, 553
BstENI	CCTNNNNNAGG	1 cut(s)	817
BstF5I	GGATG	1 cut(s)	111
BstFNI	CGCG	4 cut(s)	290, 555, 638, 640
BstHHI	GCGC	5 cut(s)	292, 365, 638, 640, 642
BstKTI	GATC	2 cut(s)	280, 397
BstMAI	GTCTC	2 cut(s)	256, 442
BstMBI	GATC	2 cut(s)	277, 394
BstMCI	CGRYCG	1 cut(s)	491
BstNI	CCWGG	1 cut(s)	674
BstPAI	GACNNNNGTC	1 cut(s)	527
BstSCI	CCNGG	3 cut(s)	294, 562, 672
BstUI	CGCG	4 cut(s)	290, 555, 638, 640
BstV1I	GCAGC	5 cut(s)	158, 393, 570, 765, 787
BstV2I	GAAGAC	1 cut(s)	292
BsuRI	GGCC	3 cut(s)	791, 812, 948
BtgI	CCRYGG	2 cut(s)	135, 553
BtrI	CACGTC	3 cut(s)	199, 436, 808
BtsCI	GGATG	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	339
BveI	ACCTGC	1 cut(s)	482
Cac8I	GCNNGC	6 cut(s)	479, 541, 638, 640, 761, 827
CfoI	GCGC	5 cut(s)	292, 365, 638, 640, 642
Cfr10I	RCCGGY	2 cut(s)	486, 890
Cfr13I	GGNCC	1 cut(s)	694
Cfr42I	CCGCGG	1 cut(s)	556
CseI	GACGC	2 cut(s)	230, 946
CsiI	ACCWGGT	1 cut(s)	672
DpnI	GATC	2 cut(s)	279, 396
DpnII	GATC	2 cut(s)	277, 394
DrdI	GACNNNNNNGTC	3 cut(s)	365, 674, 692
DseDI	GACNNNNNNGTC	3 cut(s)	365, 674, 692
EaeI	YGGCCR	1 cut(s)	946
Eam1104I	CTCTTC	2 cut(s)	732, 865
EarI	CTCTTC	2 cut(s)	732, 865
EciI	GGCGGA	4 cut(s)	182, 259, 301, 762
Eco24I	GRGCYC	1 cut(s)	765
Eco32I	GATATC	1 cut(s)	936
Eco47I	GGWCC	1 cut(s)	694
Eco57I	CTGAAG	1 cut(s)	562
Eco72I	CACGTG	1 cut(s)	453
Eco88I	CYCGRG	2 cut(s)	584, 814
EcoNI	CCTNNNNNAGG	1 cut(s)	817
EcoRI	GAATTC	1 cut(s)	836
EcoRII	CCWGG	1 cut(s)	672
EcoRV	GATATC	1 cut(s)	936
EcoT38I	GRGCYC	1 cut(s)	765
Esp3I	CGTCTC	1 cut(s)	442
FaiI	YATR	3 cut(s)	521, 656, 997
FauI	CCCGC	2 cut(s)	486, 774
FblI	GTMKAC	1 cut(s)	678
FokI	GGATG	1 cut(s)	98
FriOI	GRGCYC	1 cut(s)	765
FspBI	CTAG	1 cut(s)	797
GlaI	GCGC	5 cut(s)	291, 364, 637, 639, 641
GsaI	CCCAGC	1 cut(s)	469
GsuI	CTGGAG	3 cut(s)	223, 616, 838
HaeIII	GGCC	3 cut(s)	791, 812, 948
HgaI	GACGC	2 cut(s)	230, 946
HhaI	GCGC	5 cut(s)	292, 365, 638, 640, 642
Hin1I	GRCGYC	2 cut(s)	623, 957
Hin6I	GCGC	5 cut(s)	290, 363, 636, 638, 640
HinP1I	GCGC	5 cut(s)	290, 363, 636, 638, 640
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HphI	GGTGA	2 cut(s)	124, 754
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188III	TCNNGA	7 cut(s)	6, 319, 376, 532, 586, 816, 864
Hpy8I	GTNNAC	1 cut(s)	679
HpyAV	CCTTC	4 cut(s)	316, 439, 559, 813
HpyCH4III	ACNGT	2 cut(s)	82, 136
HpyCH4IV	ACGT	6 cut(s)	198, 435, 452, 597, 623, 807
HpyCH4V	TGCA	3 cut(s)	174, 444, 539
HpySE526I	ACGT	6 cut(s)	198, 435, 452, 597, 623, 807
Hsp92I	GRCGYC	2 cut(s)	623, 957
HspAI	GCGC	5 cut(s)	290, 363, 636, 638, 640
Kpn2I	TCCGGA	1 cut(s)	5
KspI	CCGCGG	1 cut(s)	556
Kzo9I	GATC	2 cut(s)	277, 394
LguI	GCTCTTC	1 cut(s)	865
LmnI	GCTCC	9 cut(s)	8, 297, 405, 414, 462, 548, 650, 822, 878
Lsp1109I	GCAGC	5 cut(s)	158, 393, 570, 765, 787
LweI	GCATC	2 cut(s)	183, 453
MabI	ACCWGGT	1 cut(s)	672
MaeI	CTAG	1 cut(s)	797
MaeII	ACGT	6 cut(s)	198, 435, 452, 597, 623, 807
MaeIII	GTNAC	3 cut(s)	130, 199, 422
MalI	GATC	2 cut(s)	279, 396
MbiI	CCGCTC	3 cut(s)	72, 481, 645
MboI	GATC	2 cut(s)	277, 394
MboII	GAAGA	3 cut(s)	292, 749, 852
MfeI	CAATTG	1 cut(s)	698
MhlI	GDGCHC	3 cut(s)	13, 390, 765
MluCI	AATT	2 cut(s)	698, 836
MlyI	GAGTC	7 cut(s)	258, 503, 517, 576, 680, 843, 950
MmeI	TCCRAC	4 cut(s)	531, 651, 765, 884
MroI	TCCGGA	1 cut(s)	5
MseI	TTAA	2 cut(s)	92, 831
MslI	CAYNNNNRTG	1 cut(s)	137
MspA1I	CMGCKG	3 cut(s)	171, 555, 778
MspCI	CTTAAG	1 cut(s)	91
MspR9I	CCNGG	3 cut(s)	296, 564, 674
MunI	CAATTG	1 cut(s)	698
Mva1269I	GAATGC	2 cut(s)	102, 541
MvaI	CCWGG	1 cut(s)	674
MvnI	CGCG	4 cut(s)	290, 555, 638, 640
NciI	CCSGG	2 cut(s)	296, 564
NdeII	GATC	2 cut(s)	277, 394
NlaIV	GGNNCC	2 cut(s)	458, 544
NmeAIII	GCCGAG	2 cut(s)	353, 735
NmuCI	GTSAC	3 cut(s)	130, 199, 422
OliI	CACNNNNGTG	1 cut(s)	137
PaeR7I	CTCGAG	1 cut(s)	584
PauI	GCGCGC	2 cut(s)	636, 638
PciSI	GCTCTTC	1 cut(s)	865
PcsI	WCGNNNNNNNCGW	6 cut(s)	132, 354, 390, 432, 756, 966
PctI	GAATGC	2 cut(s)	102, 541
PfeI	GAWTC	3 cut(s)	162, 263, 882
PleI	GAGTC	7 cut(s)	257, 503, 517, 576, 680, 843, 949
PmaCI	CACGTG	1 cut(s)	453
PmlI	CACGTG	1 cut(s)	453
PpsI	GAGTC	7 cut(s)	257, 503, 517, 576, 680, 843, 949
Ppu21I	YACGTR	1 cut(s)	453
PshAI	GACNNNNGTC	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	672
PspCI	CACGTG	1 cut(s)	453
PspFI	CCCAGC	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	672
PspN4I	GGNNCC	2 cut(s)	458, 544
PspPI	GGNCC	1 cut(s)	694
PteI	GCGCGC	2 cut(s)	636, 638
RseI	CAYNNNNRTG	1 cut(s)	137
SacII	CCGCGG	1 cut(s)	556
SalI	GTCGAC	1 cut(s)	677
SapI	GCTCTTC	1 cut(s)	865
SaqAI	TTAA	2 cut(s)	92, 831
Sau3AI	GATC	2 cut(s)	277, 394
Sau96I	GGNCC	1 cut(s)	694
SchI	GAGTC	7 cut(s)	258, 503, 517, 576, 680, 843, 950
ScrFI	CCNGG	3 cut(s)	296, 564, 674
SduI	GDGCHC	3 cut(s)	13, 390, 765
SexAI	ACCWGGT	1 cut(s)	672
SfaNI	GCATC	2 cut(s)	183, 453
Sfr274I	CTCGAG	1 cut(s)	584
Sfr303I	CCGCGG	1 cut(s)	556
SgrBI	CCGCGG	1 cut(s)	556
SinI	GGWCC	1 cut(s)	694
SlaI	CTCGAG	1 cut(s)	584
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	2 cut(s)	91, 584
SmoI	CTYRAG	2 cut(s)	91, 584
Sse9I	AATT	2 cut(s)	698, 836
SspMI	CTAG	1 cut(s)	797
StyD4I	CCNGG	3 cut(s)	294, 562, 672
TaaI	ACNGT	2 cut(s)	82, 136
TaiI	ACGT	6 cut(s)	201, 438, 455, 600, 626, 810
TasI	AATT	2 cut(s)	698, 836
TfiI	GAWTC	3 cut(s)	162, 263, 882
Tru1I	TTAA	2 cut(s)	92, 831
Tru9I	TTAA	2 cut(s)	92, 831
TscAI	CASTG	1 cut(s)	346
TseFI	GTSAC	3 cut(s)	130, 199, 422
TseI	GCWGC	5 cut(s)	171, 406, 558, 778, 800
Tsp45I	GTSAC	3 cut(s)	130, 199, 422
TspDTI	ATGAA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	346
Vha464I	CTTAAG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	694
XagI	CCTNNNNNAGG	1 cut(s)	817
XapI	RAATTY	1 cut(s)	836
XhoI	CTCGAG	1 cut(s)	584
XmiI	GTMKAC	1 cut(s)	678
XspI	CTAG	1 cut(s)	797
ZraI	GACGTC	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.