Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005662

Physical Location & Seq

Genomic Coordinates Forward (+)

52442659 .. 52443946

Gene Structure 1288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003768

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGACTCTCGTCGAAAATGCAGGCTCCTCCTCCCGCGGCGGCGGAGATAGCTTCCGACTCGAGAATGGCAACGACAGCCGCCGCCAAACAACTACGACGTCCTACTCCAGCGCGCGCCGCTCCTACTCCATCGGATCGTTCGACTACCTCGTCGACGACGACTCCGAGGTCCGATTGTCCAATGCCAAAAACGGCTCGTCTGATCGGAAAGAAGAGGTGATTGTTGTTCTCGTCGAGCTCCAGCCGCCGCTGCAGTCAGAGGCCAATCTAGCCGCTGACGTGGCCTCGGGAAGGAGATGGCTTAAAGAATTCGTGGATAGACTCTCCAGCTTTTCTCTACGAAGCTCCGGCAATTTGTATTCCGTTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

124

Amino Acids

13.53

Weight (kDa)

5.47

Isoelectric Point (pI)

67.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60220
fragaria_vesca	FvH4_7g08860
malus_domestica	MD02G1223200.v1.1 MD07G1091500.v1.1
prunus_persica	Prupe.2G116700_v2.0.a1
pyrus_communis	pycom07g07480 pycom15g32160
rosa_chinensis	RchiOBHm_Chr1g0344271 RchiOBHm_Chr7g0197351
rosa_laevigata	RLG00000003768 RLG00000015102 RLG00000019331 RLG00000025671 RLG00000028912
rosa_multiflora	Rmu_sc0000019.1_g000012 Rmu_sc0000338.1_g000018 Rmu_sc0003703.1_g000004 Rmu_sc0005991.1_g000007 Rmu_sc0016684.1_g000002 Rmu_sc0016685.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309960
rosa_rugosa	Rorug01G0172700
rosa_samantha	Rh1AG188600 Rh1BG155100 Rh1CG174400 Rh2CG262100 Rh3BG248600
rosa_wichuraiana	Rw1G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	149, 167
AatII	GACGTC	1 cut(s)	101
AccBSI	CCGCTC	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	3 cut(s)	36, 113, 115
AclWI	GGATC	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	291
AjiI	CACGTC	1 cut(s)	280
AluBI	AGCT	4 cut(s)	51, 238, 330, 345
AluI	AGCT	4 cut(s)	51, 238, 330, 345
Alw21I	GWGCWC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	142
Ama87I	CYCGRG	2 cut(s)	59, 286
AoxI	GGCC	2 cut(s)	261, 282
ApeKI	GCWGC	1 cut(s)	250
ApoI	RAATTY	1 cut(s)	308
AspLEI	GCGC	3 cut(s)	113, 115, 117
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	229
AvaI	CYCGRG	2 cut(s)	59, 286
AvaII	GGWCC	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	1 cut(s)	237
BccI	CCATC	2 cut(s)	137, 291
BceAI	ACGGC	1 cut(s)	208
BfaI	CTAG	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	251
BisI	GCNGC	9 cut(s)	37, 40, 79, 82, 118, 245, 248, 251, 273
BlsI	GCNGC	9 cut(s)	38, 41, 80, 83, 119, 246, 249, 252, 274
Bme18I	GGWCC	1 cut(s)	169
BmeT110I	CYCGRG	2 cut(s)	59, 286
BmgBI	CACGTC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	25
BoxI	GACNNNNGTC	1 cut(s)	8
BpmI	CTGGAG	3 cut(s)	91, 224, 310
BsaHI	GRCGYC	1 cut(s)	98
BsaJI	CCNNGG	3 cut(s)	34, 165, 285
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
BseDI	CCNNGG	3 cut(s)	34, 165, 285
BseLI	CCNNNNNNNGG	1 cut(s)	291
BsePI	GCGCGC	2 cut(s)	111, 113
BseRI	GAGGAG	2 cut(s)	16, 19
BseXI	GCAGC	1 cut(s)	237
Bsh1236I	CGCG	3 cut(s)	36, 113, 115
BshFI	GGCC	2 cut(s)	263, 284
BsiHKAI	GWGCWC	1 cut(s)	240
BsiHKCI	CYCGRG	2 cut(s)	59, 286
BsiSI	CCGG	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	291
BsnI	GGCC	2 cut(s)	263, 284
BsoBI	CYCGRG	2 cut(s)	59, 286
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	134, 202
BspANI	GGCC	2 cut(s)	263, 284
BspFNI	CGCG	3 cut(s)	36, 113, 115
BspLI	GGNNCC	1 cut(s)	25
BspMAI	CTGCAG	1 cut(s)	255
BspPI	GGATC	1 cut(s)	142
BsrBI	CCGCTC	1 cut(s)	120
BssECI	CCNNGG	3 cut(s)	34, 165, 285
BssHII	GCGCGC	2 cut(s)	111, 113
BssMI	GATC	2 cut(s)	134, 202
BssNI	GRCGYC	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	207
BstACI	GRCGYC	1 cut(s)	98
BstC8I	GCNNGC	3 cut(s)	22, 113, 115
BstDSI	CCRYGG	1 cut(s)	34
BstENI	CCTNNNNNAGG	1 cut(s)	289
BstFNI	CGCG	3 cut(s)	36, 113, 115
BstHHI	GCGC	3 cut(s)	113, 115, 117
BstKTI	GATC	2 cut(s)	137, 205
BstMBI	GATC	2 cut(s)	134, 202
BstMWI	GCNNNNNNNGC	7 cut(s)	48, 75, 117, 244, 250, 269, 281
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	251
BstUI	CGCG	3 cut(s)	36, 113, 115
BstV1I	GCAGC	1 cut(s)	237
BsuRI	GGCC	2 cut(s)	263, 284
BtgI	CCRYGG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	280
Cac8I	GCNNGC	3 cut(s)	22, 113, 115
CfoI	GCGC	3 cut(s)	113, 115, 117
Cfr13I	GGNCC	1 cut(s)	169
Cfr42I	CCGCGG	1 cut(s)	37
DpnI	GATC	2 cut(s)	136, 204
DpnII	GATC	2 cut(s)	134, 202
DrdI	GACNNNNNNGTC	2 cut(s)	149, 167
DseDI	GACNNNNNNGTC	2 cut(s)	149, 167
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	169
Eco53kI	GAGCTC	1 cut(s)	238
Eco88I	CYCGRG	2 cut(s)	59, 286
EcoICRI	GAGCTC	1 cut(s)	238
EcoNI	CCTNNNNNAGG	1 cut(s)	289
EcoRI	GAATTC	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	240
FauI	CCCGC	1 cut(s)	41
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	9 cut(s)	37, 40, 79, 82, 118, 245, 248, 251, 273
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	9 cut(s)	37, 40, 79, 82, 118, 245, 248, 251, 273
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	3 cut(s)	112, 114, 116
GluI	GCNGC	9 cut(s)	37, 40, 79, 82, 118, 245, 248, 251, 273
GsuI	CTGGAG	3 cut(s)	91, 224, 310
HaeIII	GGCC	2 cut(s)	263, 284
HapII	CCGG	1 cut(s)	348
HhaI	GCGC	3 cut(s)	113, 115, 117
Hin1I	GRCGYC	1 cut(s)	98
Hin6I	GCGC	3 cut(s)	111, 113, 115
HinP1I	GCGC	3 cut(s)	111, 113, 115
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	4 cut(s)	4, 57, 161, 321
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	7 cut(s)	56, 134, 166, 173, 202, 207, 259
Hpy188III	TCNNGA	2 cut(s)	61, 288
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	6 cut(s)	14, 100, 155, 158, 161, 236
HpyAV	CCTTC	1 cut(s)	285
HpyCH4IV	ACGT	2 cut(s)	98, 279
HpyCH4V	TGCA	2 cut(s)	20, 253
HpyF10VI	GCNNNNNNNGC	7 cut(s)	48, 75, 117, 244, 250, 269, 281
HpySE526I	ACGT	2 cut(s)	98, 279
Hsp92I	GRCGYC	1 cut(s)	98
HspAI	GCGC	3 cut(s)	111, 113, 115
KspI	CCGCGG	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	134, 202
LmnI	GCTCC	4 cut(s)	29, 125, 243, 350
LpnPI	CCDG	5 cut(s)	6, 121, 254, 340, 361
Lsp1109I	GCAGC	1 cut(s)	237
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	2 cut(s)	98, 279
MalI	GATC	2 cut(s)	136, 204
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	2 cut(s)	134, 202
MboII	GAAGA	1 cut(s)	224
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	2 cut(s)	308, 352
MlyI	GAGTC	3 cut(s)	51, 155, 315
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	7 cut(s)	37, 40, 158, 160, 208, 253, 295
MseI	TTAA	1 cut(s)	303
MspA1I	CMGCKG	3 cut(s)	36, 250, 275
MspI	CCGG	1 cut(s)	348
MvnI	CGCG	3 cut(s)	36, 113, 115
MwoI	GCNNNNNNNGC	7 cut(s)	48, 75, 117, 244, 250, 269, 281
NdeII	GATC	2 cut(s)	134, 202
NlaIV	GGNNCC	1 cut(s)	25
PaeR7I	CTCGAG	1 cut(s)	59
PauI	GCGCGC	2 cut(s)	111, 113
PcsI	WCGNNNNNNNCGW	4 cut(s)	138, 147, 156, 162
PkrI	GCNGC	9 cut(s)	38, 41, 80, 83, 119, 246, 249, 252, 274
PleI	GAGTC	3 cut(s)	51, 155, 315
PpsI	GAGTC	3 cut(s)	51, 155, 315
PshAI	GACNNNNGTC	1 cut(s)	8
Psp124BI	GAGCTC	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	1 cut(s)	169
PstI	CTGCAG	1 cut(s)	255
PteI	GCGCGC	2 cut(s)	111, 113
SacI	GAGCTC	1 cut(s)	240
SacII	CCGCGG	1 cut(s)	37
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	9 cut(s)	37, 40, 79, 82, 118, 245, 248, 251, 273
Sau3AI	GATC	2 cut(s)	134, 202
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	3 cut(s)	51, 155, 315
SduI	GDGCHC	1 cut(s)	240
SfcI	CTRYAG	1 cut(s)	251
Sfr274I	CTCGAG	1 cut(s)	59
Sfr303I	CCGCGG	1 cut(s)	37
SgrBI	CCGCGG	1 cut(s)	37
SgrDI	CGTCGACG	1 cut(s)	152
SinI	GGWCC	1 cut(s)	169
SlaI	CTCGAG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	308, 352
SspMI	CTAG	1 cut(s)	269
SstI	GAGCTC	1 cut(s)	240
TaiI	ACGT	2 cut(s)	101, 282
TaqI	TCGA	5 cut(s)	12, 60, 141, 153, 234
TasI	AATT	2 cut(s)	308, 352
TauI	GCSGC	8 cut(s)	39, 42, 81, 84, 120, 247, 250, 275
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TseI	GCWGC	1 cut(s)	250
TspGWI	ACGGA	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	169
XagI	CCTNNNNNAGG	1 cut(s)	289
XapI	RAATTY	1 cut(s)	308
XhoI	CTCGAG	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	269
ZraI	GACGTC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.