Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005662

Physical Location & Seq

Genomic Coordinates Reverse (-)

15311681 .. 15311980

Gene Structure 300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17655

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGTCCTCTCTCTTCTTCCCAATCTTCACCAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTCAGAGCCTCCTCCACCACCGTCGTCGCCTGCCTCTCGAAGTTCGAGCATTACGATCAGCTCCAGTTACTCTCTCTCTGCTGTCACGCCTTCCATGTATCGTGCATCGACACGTGGCTCCACTCCCAGCAGACCTGCCCGCTCTGCCGGTCGCCGATTTCCACATCTGACTCCGAGCTCATGACTCTCGTCGAAAATGCAGGCTCCTCCGCCCGCGGCGGCGGCGATTACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

99

Amino Acids

10.8

Weight (kDa)

5.64

Isoelectric Point (pI)

61.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	31 - 71	1.6e-10	Ring finger domain
zf-rbx1	PF12678	43 - 71	5.4e-10	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	44 - 74	2.8e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60220
fragaria_vesca	FvH4_7g08860
malus_domestica	MD02G1223200.v1.1 MD07G1091500.v1.1
prunus_persica	Prupe.2G116700_v2.0.a1
pyrus_communis	pycom07g07480 pycom15g32160
rosa_chinensis	RchiOBHm_Chr1g0344271 RchiOBHm_Chr7g0197351
rosa_laevigata	RLG00000003768 RLG00000015102 RLG00000019331 RLG00000025671 RLG00000028912
rosa_multiflora	Rmu_sc0000019.1_g000012 Rmu_sc0000338.1_g000018 Rmu_sc0003703.1_g000004 Rmu_sc0005991.1_g000007 Rmu_sc0016684.1_g000002 Rmu_sc0016685.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309960
rosa_rugosa	Rorug01G0172700
rosa_samantha	Rh1AG188600 Rh1BG155100 Rh1CG174400 Rh2CG262100 Rh3BG248600
rosa_wichuraiana	Rw1G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	206
AccBSI	CCGCTC	1 cut(s)	205
AccII	CGCG	1 cut(s)	279
AciI	CCGC	6 cut(s)	203, 273, 277, 279, 282, 285
AcvI	CACGTG	1 cut(s)	177
AflIII	ACRYGT	1 cut(s)	174
AluBI	AGCT	2 cut(s)	124, 241
AluI	AGCT	2 cut(s)	124, 241
Alw21I	GWGCWC	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	243
BbrPI	CACGTG	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	243
BfuAI	ACCTGC	1 cut(s)	206
BisI	GCNGC	3 cut(s)	280, 283, 286
BlsI	GCNGC	3 cut(s)	281, 284, 287
BmiI	GGNNCC	2 cut(s)	182, 268
BmsI	GCATC	1 cut(s)	177
BoxI	GACNNNNGTC	1 cut(s)	251
BpmI	CTGGAG	1 cut(s)	110
BsaAI	YACGTR	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	277
Bse118I	RCCGGY	1 cut(s)	210
Bse1I	ACTGG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	277
BseNI	ACTGG	1 cut(s)	127
BseRI	GAGGAG	2 cut(s)	64, 259
BseYI	CCCAGC	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	279
Bsh1285I	CGRYCG	1 cut(s)	215
BsiEI	CGRYCG	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	118
BspACI	CCGC	6 cut(s)	203, 273, 277, 279, 282, 285
BspFNI	CGCG	1 cut(s)	279
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	182, 268
BspMI	ACCTGC	1 cut(s)	206
BsrBI	CCGCTC	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	17
BstBAI	YACGTR	1 cut(s)	177
BstC8I	GCNNGC	4 cut(s)	94, 203, 265, 277
BstDSI	CCRYGG	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	279
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstMCI	CGRYCG	1 cut(s)	215
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 285
BstPAI	GACNNNNGTC	1 cut(s)	251
BstUI	CGCG	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	277
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	4 cut(s)	94, 203, 265, 277
CciI	TCATGA	1 cut(s)	243
Cfr10I	RCCGGY	1 cut(s)	210
Cfr42I	CCGCGG	1 cut(s)	280
CviAII	CATG	2 cut(s)	158, 244
CviJI	RGCY	5 cut(s)	71, 124, 181, 241, 267
CviKI_1	RGCY	5 cut(s)	71, 124, 181, 241, 267
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	262
Ecl136II	GAGCTC	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	241
Eco72I	CACGTG	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	241
EcoT38I	GRGCYC	1 cut(s)	243
FaeI	CATG	2 cut(s)	161, 247
FaiI	YATR	2 cut(s)	159, 245
FatI	CATG	2 cut(s)	157, 243
FauI	CCCGC	2 cut(s)	210, 284
Fnu4HI	GCNGC	3 cut(s)	280, 283, 286
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	3 cut(s)	280, 283, 286
GluI	GCNGC	3 cut(s)	280, 283, 286
GsaI	CCCAGC	1 cut(s)	193
GsuI	CTGGAG	1 cut(s)	110
HapII	CCGG	1 cut(s)	211
Hin1II	CATG	2 cut(s)	161, 247
HinfI	GANTC	2 cut(s)	233, 247
HpaII	CCGG	1 cut(s)	211
HphI	GGTGA	1 cut(s)	19
Hpy188I	TCNGA	4 cut(s)	68, 232, 238, 299
Hpy188III	TCNNGA	2 cut(s)	100, 244
Hpy99I	CGWCG	3 cut(s)	89, 92, 257
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	2 cut(s)	168, 263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 285
HpySE526I	ACGT	1 cut(s)	176
Hsp92II	CATG	2 cut(s)	161, 247
KspI	CCGCGG	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	3 cut(s)	129, 186, 272
LpnPI	CCDG	6 cut(s)	106, 140, 203, 211, 224, 249
LweI	GCATC	1 cut(s)	177
MaeII	ACGT	1 cut(s)	176
MaeIII	GTNAC	2 cut(s)	129, 146
MalI	GATC	1 cut(s)	120
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	1 cut(s)	118
MboII	GAAGA	3 cut(s)	4, 7, 16
MhlI	GDGCHC	1 cut(s)	243
MlyI	GAGTC	2 cut(s)	227, 241
MnlI	CCTC	5 cut(s)	16, 82, 85, 107, 280
MspA1I	CMGCKG	1 cut(s)	279
MspI	CCGG	1 cut(s)	211
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	2 cut(s)	207, 285
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	2 cut(s)	161, 247
NlaIV	GGNNCC	2 cut(s)	182, 268
NmuCI	GTSAC	1 cut(s)	146
PagI	TCATGA	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PkrI	GCNGC	3 cut(s)	281, 284, 287
PleI	GAGTC	2 cut(s)	227, 241
PmaCI	CACGTG	1 cut(s)	177
PmlI	CACGTG	1 cut(s)	177
PpsI	GAGTC	2 cut(s)	227, 241
Ppu21I	YACGTR	1 cut(s)	177
PshAI	GACNNNNGTC	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	243
PspCI	CACGTG	1 cut(s)	177
PspFI	CCCAGC	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	182, 268
SacI	GAGCTC	1 cut(s)	243
SacII	CCGCGG	1 cut(s)	280
SatI	GCNGC	3 cut(s)	280, 283, 286
Sau3AI	GATC	1 cut(s)	118
SchI	GAGTC	2 cut(s)	227, 241
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	4 cut(s)	126, 179, 200, 243
SfaNI	GCATC	1 cut(s)	177
Sfr303I	CCGCGG	1 cut(s)	280
SgrBI	CCGCGG	1 cut(s)	280
SsiI	CCGC	6 cut(s)	203, 273, 277, 279, 282, 285
SstI	GAGCTC	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	4 cut(s)	101, 108, 171, 255
TauI	GCSGC	3 cut(s)	282, 285, 288
TseFI	GTSAC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.