Rroxscaffold_4G00309960

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
31816952 .. 31820288
3337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00309960.1

Sequence Viewer

Length: 1032 bp
ATGTCCGGAGCACCGCCGCCACCGCCACCGCCATTATTAACCTCCACCACCTCGCCACCTCACAACAACCGCTCATTAACCGTGAAAACCTTAAGTCCGAGCATTCTCATCATCCTCCTCATCGTCGTCGTCACCGTGGTGGCTTCATTTTCCCTCTGCCGAATCCTCCGCTGCATCAACAACCGCTTCCTCCGCCACGCCACTCCCTCCTCCGGCGACGACGCCACCGCCCGCTCCTCCAGCCGGCGAGTCTCTCCTGCCGAATCCGCCGCCCCCGATCCCGTCGCCGCGCTCCCGGTCTTCGCCTTCTCCGCCATCAAGAACCGCCGAGCCTCCTCCACTGCCGTCGTCGCCGCCGACTGCGCCGTCTGCCTCTCGAAGTTCGAGCACGACGATCAGCTCCGGCTGCTCCCTCTCTGCTGTCACGCCTTCCACGTCTCGTGCATCGACACGTGGCTCCACTCCCAGCAGACCTGCCCTCTCTGCCGGTCGCCGATTTCCGCGTCGGACTCCGAGCTCATGGCTCTCGTCGAGAATGCAGGCTCCTCCGCCCGCGGCGGCGGAGATAGCTTCCGACTCGAGATTGGCAACGTCAGCCGCCGCCAAACAACTACGACGTCCAACTCCAGCGCGCGCCGCTCCTACTCCATCGGATCGTTCGACTACCTCGTCGACGACGACTCGGAGGTCCAATTGTCCAATGCCAGAAACGGCTCGTCTGACCGGAAAGAAGAGGTGATTGTCGTTCTCGGCGAGCCCCCGCCACCGCCGCTGCCGTCGGAGGCCAGTCTAGCTGCTGACGTGGCCTCGGGAAGGAGCTGGCTCAAGGAATTCGTGGATAGACTCTCCAGCTCTTCTCTACGAAGCTCCGGCAGATTCTTTACCGGCAGTAGCCGTCGGAGTGAGATAGGCAGCACGGGAGAGTGGATATCGGAGTCCGGCCAAGTCGGCGTCGAGTTCTCCGAGTATTTCCGGTGGTTATCGGAGGTGGAGACCGTGGAGAGAGGCCTTAACCAAATTGATTACTATTAA

Protein Analysis

343

Amino Acids

37.0

Weight (kDa)

6.11

Isoelectric Point (pI)

70.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 120 - 163 9.1e-13 Ring finger domain
zf-RING_11 PF17123 120 - 149 9e-09 RING-like zinc finger
zf-rbx1 PF12678 130 - 163 3.5e-07 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 365, 668, 686
AatII GACGTC 1 cut(s) 620
Acc36I ACCTGC 1 cut(s) 482
AccBSI CCGCTC 3 cut(s) 72, 234, 639
AccI GTMKAC 1 cut(s) 672
AccII CGCG 5 cut(s) 290, 503, 555, 632, 634
AccIII TCCGGA 1 cut(s) 5
AclWI GGATC 2 cut(s) 272, 661
AcoI YGGCCR 1 cut(s) 940
AcsI RAATTY 1 cut(s) 830
AcvI CACGTG 1 cut(s) 453
AcyI GRCGYC 3 cut(s) 222, 617, 951
AfiI CCNNNNNNNGG 3 cut(s) 212, 243, 813
AflII CTTAAG 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 450
AjiI CACGTC 2 cut(s) 436, 802
AleI CACNNNNGTG 1 cut(s) 137
AluBI AGCT 7 cut(s) 400, 517, 570, 794, 819, 852, 867
AluI AGCT 7 cut(s) 400, 517, 570, 794, 819, 852, 867
Alw21I GWGCWC 3 cut(s) 13, 390, 519
Alw26I GTCTC 3 cut(s) 256, 442, 986
AlwI GGATC 2 cut(s) 272, 661
Ama87I CYCGRG 2 cut(s) 578, 808
Aor13HI TCCGGA 1 cut(s) 5
AoxI GGCC 4 cut(s) 783, 804, 940, 1006
ApeKI GCWGC 5 cut(s) 171, 406, 772, 794, 912
ApoI RAATTY 1 cut(s) 830
AspLEI GCGC 5 cut(s) 292, 365, 632, 634, 636
AspS9I GGNCC 1 cut(s) 688
AsuC2I CCSGG 1 cut(s) 296
AsuHPI GGTGA 2 cut(s) 124, 748
AvaI CYCGRG 2 cut(s) 578, 808
AvaII GGWCC 1 cut(s) 688
BanII GRGCYC 2 cut(s) 519, 759
BauI CACGAG 1 cut(s) 439
BbrPI CACGTG 1 cut(s) 453
BbsI GAAGAC 1 cut(s) 292
Bbv12I GWGCWC 3 cut(s) 13, 390, 519
BbvI GCAGC 5 cut(s) 158, 393, 759, 781, 924
BccI CCATC 2 cut(s) 323, 656
BceAI ACGGC 5 cut(s) 329, 350, 727, 760, 879
BcnI CCSGG 1 cut(s) 296
BcoDI GTCTC 3 cut(s) 256, 442, 986
BfaI CTAG 1 cut(s) 791
BfrI CTTAAG 1 cut(s) 91
BfuAI ACCTGC 1 cut(s) 482
BglI GCCNNNNNGGC 1 cut(s) 948
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 688
BmeT110I CYCGRG 2 cut(s) 578, 808
BmgBI CACGTC 2 cut(s) 436, 802
BmgT120I GGNCC 1 cut(s) 688
BmiI GGNNCC 2 cut(s) 458, 544
BmrFI CCNGG 1 cut(s) 296
BmsI GCATC 2 cut(s) 183, 453
BpiI GAAGAC 1 cut(s) 292
BpmI CTGGAG 3 cut(s) 223, 610, 832
BpuEI CTTGAG 1 cut(s) 809
BpuMI CCSGG 1 cut(s) 296
BsaAI YACGTR 1 cut(s) 453
BsaHI GRCGYC 3 cut(s) 222, 617, 951
BsaI GGTCTC 1 cut(s) 986
BsaJI CCNNGG 4 cut(s) 135, 553, 807, 996
BsaWI WCCGGW 3 cut(s) 5, 723, 972
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 243, 813
Bse118I RCCGGY 3 cut(s) 243, 486, 884
Bse1I ACTGG 1 cut(s) 786
BseAI TCCGGA 1 cut(s) 5
BseDI CCNNGG 4 cut(s) 135, 553, 807, 996
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 3 cut(s) 212, 243, 813
BseNI ACTGG 1 cut(s) 786
BsePI GCGCGC 2 cut(s) 630, 632
BseRI GAGGAG 5 cut(s) 107, 199, 226, 325, 535
BseXI GCAGC 5 cut(s) 158, 393, 759, 781, 924
BseYI CCCAGC 1 cut(s) 465
Bsh1236I CGCG 5 cut(s) 290, 503, 555, 632, 634
Bsh1285I CGRYCG 1 cut(s) 491
BshFI GGCC 4 cut(s) 785, 806, 942, 1008
BsiEI CGRYCG 1 cut(s) 491
BsiHKAI GWGCWC 3 cut(s) 13, 390, 519
BsiHKCI CYCGRG 2 cut(s) 578, 808
BslI CCNNNNNNNGG 3 cut(s) 212, 243, 813
BsmAI GTCTC 3 cut(s) 256, 442, 986
BsmBI CGTCTC 1 cut(s) 442
BsmI GAATGC 2 cut(s) 102, 541
BsnI GGCC 4 cut(s) 785, 806, 942, 1008
Bso31I GGTCTC 1 cut(s) 986
BsoBI CYCGRG 2 cut(s) 578, 808
Bsp1286I GDGCHC 4 cut(s) 13, 390, 519, 759
Bsp13I TCCGGA 1 cut(s) 5
Bsp143I GATC 3 cut(s) 277, 394, 653
BspANI GGCC 4 cut(s) 785, 806, 942, 1008
BspEI TCCGGA 1 cut(s) 5
BspFNI CGCG 5 cut(s) 290, 503, 555, 632, 634
BspLI GGNNCC 2 cut(s) 458, 544
BspMI ACCTGC 1 cut(s) 482
BspPI GGATC 2 cut(s) 272, 661
BspQI GCTCTTC 1 cut(s) 859
BspTI CTTAAG 1 cut(s) 91
BspTNI GGTCTC 1 cut(s) 986
BsrBI CCGCTC 3 cut(s) 72, 234, 639
BsrFI RCCGGY 3 cut(s) 243, 486, 884
BsrI ACTGG 1 cut(s) 786
BssAI RCCGGY 3 cut(s) 243, 486, 884
BssECI CCNNGG 4 cut(s) 135, 553, 807, 996
BssHII GCGCGC 2 cut(s) 630, 632
BssMI GATC 3 cut(s) 277, 394, 653
BssNI GRCGYC 3 cut(s) 222, 617, 951
BssSI CACGAG 1 cut(s) 439
Bst2BI CACGAG 1 cut(s) 439
Bst4CI ACNGT 3 cut(s) 82, 136, 997
Bst6I CTCTTC 2 cut(s) 726, 859
BstACI GRCGYC 3 cut(s) 222, 617, 951
BstAFI CTTAAG 1 cut(s) 91
BstBAI YACGTR 1 cut(s) 453
BstC8I GCNNGC 8 cut(s) 232, 245, 541, 553, 632, 634, 755, 821
BstDSI CCRYGG 3 cut(s) 135, 553, 996
BstENI CCTNNNNNAGG 1 cut(s) 811
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 5 cut(s) 290, 503, 555, 632, 634
BstHHI GCGC 5 cut(s) 292, 365, 632, 634, 636
BstKTI GATC 3 cut(s) 280, 397, 656
BstMAI GTCTC 3 cut(s) 256, 442, 986
BstMBI GATC 3 cut(s) 277, 394, 653
BstMCI CGRYCG 1 cut(s) 491
BstSCI CCNGG 1 cut(s) 294
BstUI CGCG 5 cut(s) 290, 503, 555, 632, 634
BstV1I GCAGC 5 cut(s) 158, 393, 759, 781, 924
BstV2I GAAGAC 1 cut(s) 292
BsuRI GGCC 4 cut(s) 785, 806, 942, 1008
BtgI CCRYGG 3 cut(s) 135, 553, 996
BtrI CACGTC 2 cut(s) 436, 802
BtsCI GGATG 1 cut(s) 111
BtsI GCAGTG 1 cut(s) 339
BtsIMutI CAGTG 1 cut(s) 339
BveI ACCTGC 1 cut(s) 482
Cac8I GCNNGC 8 cut(s) 232, 245, 541, 553, 632, 634, 755, 821
CfoI GCGC 5 cut(s) 292, 365, 632, 634, 636
Cfr10I RCCGGY 3 cut(s) 243, 486, 884
Cfr13I GGNCC 1 cut(s) 688
Cfr42I CCGCGG 1 cut(s) 556
CseI GACGC 3 cut(s) 230, 492, 940
CviAII CATG 1 cut(s) 520
DpnI GATC 3 cut(s) 279, 396, 655
DpnII GATC 3 cut(s) 277, 394, 653
DrdI GACNNNNNNGTC 3 cut(s) 365, 668, 686
DseDI GACNNNNNNGTC 3 cut(s) 365, 668, 686
EaeI YGGCCR 1 cut(s) 940
Eam1104I CTCTTC 2 cut(s) 726, 859
EarI CTCTTC 2 cut(s) 726, 859
EciI GGCGGA 5 cut(s) 182, 256, 301, 538, 576
Ecl136II GAGCTC 1 cut(s) 517
Eco147I AGGCCT 1 cut(s) 1008
Eco24I GRGCYC 2 cut(s) 519, 759
Eco31I GGTCTC 1 cut(s) 986
Eco32I GATATC 1 cut(s) 930
Eco47I GGWCC 1 cut(s) 688
Eco53kI GAGCTC 1 cut(s) 517
Eco72I CACGTG 1 cut(s) 453
Eco88I CYCGRG 2 cut(s) 578, 808
EcoICRI GAGCTC 1 cut(s) 517
EcoNI CCTNNNNNAGG 1 cut(s) 811
EcoRI GAATTC 1 cut(s) 830
EcoRV GATATC 1 cut(s) 930
EcoT38I GRGCYC 2 cut(s) 519, 759
Esp3I CGTCTC 1 cut(s) 442
FaeI CATG 1 cut(s) 523
FaiI YATR 1 cut(s) 521
FatI CATG 1 cut(s) 519
FauI CCCGC 3 cut(s) 239, 560, 768
FblI GTMKAC 1 cut(s) 672
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 2 cut(s) 519, 759
FspBI CTAG 1 cut(s) 791
GlaI GCGC 5 cut(s) 291, 364, 631, 633, 635
GsaI CCCAGC 1 cut(s) 469
GsuI CTGGAG 3 cut(s) 223, 610, 832
HaeIII GGCC 4 cut(s) 785, 806, 942, 1008
HgaI GACGC 3 cut(s) 230, 492, 940
HhaI GCGC 5 cut(s) 292, 365, 632, 634, 636
Hin1I GRCGYC 3 cut(s) 222, 617, 951
Hin1II CATG 1 cut(s) 523
Hin6I GCGC 5 cut(s) 290, 363, 630, 632, 634
HinP1I GCGC 5 cut(s) 290, 363, 630, 632, 634
HincII GTYRAC 1 cut(s) 673
HindII GTYRAC 1 cut(s) 673
HinfI GANTC 9 cut(s) 162, 249, 263, 509, 576, 680, 843, 876, 935
HphI GGTGA 2 cut(s) 124, 748
Hpy166II GTNNAC 1 cut(s) 673
Hpy188III TCNNGA 6 cut(s) 6, 319, 376, 532, 580, 810
Hpy8I GTNNAC 1 cut(s) 673
HpyAV CCTTC 3 cut(s) 316, 439, 807
HpyCH4III ACNGT 3 cut(s) 82, 136, 997
HpyCH4IV ACGT 5 cut(s) 435, 452, 591, 617, 801
HpyCH4V TGCA 3 cut(s) 174, 444, 539
HpySE526I ACGT 5 cut(s) 435, 452, 591, 617, 801
Hsp92I GRCGYC 3 cut(s) 222, 617, 951
Hsp92II CATG 1 cut(s) 523
HspAI GCGC 5 cut(s) 290, 363, 630, 632, 634
Kpn2I TCCGGA 1 cut(s) 5
KroI GCCGGC 1 cut(s) 243
KroNI GCCGGC 1 cut(s) 245
KspI CCGCGG 1 cut(s) 556
Kzo9I GATC 3 cut(s) 277, 394, 653
LguI GCTCTTC 1 cut(s) 859
Lsp1109I GCAGC 5 cut(s) 158, 393, 759, 781, 924
LweI GCATC 2 cut(s) 183, 453
MaeI CTAG 1 cut(s) 791
MaeII ACGT 5 cut(s) 435, 452, 591, 617, 801
MaeIII GTNAC 2 cut(s) 130, 422
MalI GATC 3 cut(s) 279, 396, 655
MbiI CCGCTC 3 cut(s) 72, 234, 639
MboI GATC 3 cut(s) 277, 394, 653
MboII GAAGA 3 cut(s) 292, 743, 846
MfeI CAATTG 1 cut(s) 692
MhlI GDGCHC 4 cut(s) 13, 390, 519, 759
MluCI AATT 3 cut(s) 692, 830, 1017
MlyI GAGTC 6 cut(s) 258, 503, 570, 674, 837, 944
MmeI TCCRAC 5 cut(s) 486, 598, 645, 759, 878
MroI TCCGGA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 243
MseI TTAA 5 cut(s) 38, 77, 92, 1011, 1030
MslI CAYNNNNRTG 1 cut(s) 137
MspA1I CMGCKG 3 cut(s) 171, 555, 772
MspCI CTTAAG 1 cut(s) 91
MspR9I CCNGG 1 cut(s) 296
MunI CAATTG 1 cut(s) 692
Mva1269I GAATGC 2 cut(s) 102, 541
MvnI CGCG 5 cut(s) 290, 503, 555, 632, 634
NaeI GCCGGC 1 cut(s) 245
NciI CCSGG 1 cut(s) 296
NdeII GATC 3 cut(s) 277, 394, 653
NgoMIV GCCGGC 1 cut(s) 243
NlaIII CATG 1 cut(s) 523
NlaIV GGNNCC 2 cut(s) 458, 544
NmeAIII GCCGAG 2 cut(s) 353, 729
NmuCI GTSAC 2 cut(s) 130, 422
OliI CACNNNNGTG 1 cut(s) 137
PaeR7I CTCGAG 1 cut(s) 578
PauI GCGCGC 2 cut(s) 630, 632
PceI AGGCCT 1 cut(s) 1008
PciSI GCTCTTC 1 cut(s) 859
PcsI WCGNNNNNNNCGW 9 cut(s) 132, 354, 390, 432, 657, 666, 675, 750, 960
PctI GAATGC 2 cut(s) 102, 541
PdiI GCCGGC 1 cut(s) 245
PfeI GAWTC 3 cut(s) 162, 263, 876
PleI GAGTC 6 cut(s) 257, 503, 570, 674, 837, 943
PmaCI CACGTG 1 cut(s) 453
PmlI CACGTG 1 cut(s) 453
PpsI GAGTC 6 cut(s) 257, 503, 570, 674, 837, 943
Ppu21I YACGTR 1 cut(s) 453
Psp124BI GAGCTC 1 cut(s) 519
PspCI CACGTG 1 cut(s) 453
PspFI CCCAGC 1 cut(s) 465
PspN4I GGNNCC 2 cut(s) 458, 544
PspPI GGNCC 1 cut(s) 688
PteI GCGCGC 2 cut(s) 630, 632
RseI CAYNNNNRTG 1 cut(s) 137
SacI GAGCTC 1 cut(s) 519
SacII CCGCGG 1 cut(s) 556
SalI GTCGAC 1 cut(s) 671
SapI GCTCTTC 1 cut(s) 859
SaqAI TTAA 5 cut(s) 38, 77, 92, 1011, 1030
Sau3AI GATC 3 cut(s) 277, 394, 653
Sau96I GGNCC 1 cut(s) 688
SchI GAGTC 6 cut(s) 258, 503, 570, 674, 837, 944
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 4 cut(s) 13, 390, 519, 759
SfaNI GCATC 2 cut(s) 183, 453
Sfr274I CTCGAG 1 cut(s) 578
Sfr303I CCGCGG 1 cut(s) 556
SgrBI CCGCGG 1 cut(s) 556
SgrDI CGTCGACG 1 cut(s) 671
SinI GGWCC 1 cut(s) 688
SlaI CTCGAG 1 cut(s) 578
SmiMI CAYNNNNRTG 1 cut(s) 137
SmlI CTYRAG 3 cut(s) 91, 578, 824
SmoI CTYRAG 3 cut(s) 91, 578, 824
Sse9I AATT 3 cut(s) 692, 830, 1017
SseBI AGGCCT 1 cut(s) 1008
SspMI CTAG 1 cut(s) 791
SstI GAGCTC 1 cut(s) 519
StuI AGGCCT 1 cut(s) 1008
StyD4I CCNGG 1 cut(s) 294
TaaI ACNGT 3 cut(s) 82, 136, 997
TaiI ACGT 5 cut(s) 438, 455, 594, 620, 804
TaqI TCGA 8 cut(s) 377, 384, 447, 531, 579, 660, 672, 954
TasI AATT 3 cut(s) 692, 830, 1017
TfiI GAWTC 3 cut(s) 162, 263, 876
Tru1I TTAA 5 cut(s) 38, 77, 92, 1011, 1030
Tru9I TTAA 5 cut(s) 38, 77, 92, 1011, 1030
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 2 cut(s) 130, 422
TseI GCWGC 5 cut(s) 171, 406, 772, 794, 912
Tsp45I GTSAC 2 cut(s) 130, 422
TspDTI ATGAA 1 cut(s) 135
TspRI CASTG 1 cut(s) 346
Vha464I CTTAAG 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 688
XagI CCTNNNNNAGG 1 cut(s) 811
XapI RAATTY 1 cut(s) 830
XhoI CTCGAG 1 cut(s) 578
XmiI GTMKAC 1 cut(s) 672
XspI CTAG 1 cut(s) 791
ZraI GACGTC 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.