E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G60220 |
| fragaria_vesca | FvH4_7g08860 |
| malus_domestica | MD02G1223200.v1.1 MD07G1091500.v1.1 |
| prunus_persica | Prupe.2G116700_v2.0.a1 |
| pyrus_communis | pycom07g07480 pycom15g32160 |
| rosa_chinensis | RchiOBHm_Chr1g0344271 RchiOBHm_Chr7g0197351 |
| rosa_laevigata | RLG00000003768 RLG00000015102 RLG00000019331 RLG00000025671 RLG00000028912 |
| rosa_multiflora | Rmu_sc0000019.1_g000012 Rmu_sc0000338.1_g000018 Rmu_sc0003703.1_g000004 Rmu_sc0005991.1_g000007 Rmu_sc0016684.1_g000002 Rmu_sc0016685.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00309960 |
| rosa_rugosa | Rorug01G0172700 |
| rosa_samantha | Rh1AG188600 Rh1BG155100 Rh1CG174400 Rh2CG262100 Rh3BG248600 |
| rosa_wichuraiana | Rw1G015540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 3 cut(s) | 365, 668, 686 |
| AatII | GACGTC | 1 cut(s) | 620 |
| Acc36I | ACCTGC | 1 cut(s) | 482 |
| AccBSI | CCGCTC | 3 cut(s) | 72, 234, 639 |
| AccI | GTMKAC | 1 cut(s) | 672 |
| AccII | CGCG | 5 cut(s) | 290, 503, 555, 632, 634 |
| AccIII | TCCGGA | 1 cut(s) | 5 |
| AclWI | GGATC | 2 cut(s) | 272, 661 |
| AcoI | YGGCCR | 1 cut(s) | 940 |
| AcsI | RAATTY | 1 cut(s) | 830 |
| AcvI | CACGTG | 1 cut(s) | 453 |
| AcyI | GRCGYC | 3 cut(s) | 222, 617, 951 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 212, 243, 813 |
| AflII | CTTAAG | 1 cut(s) | 91 |
| AflIII | ACRYGT | 1 cut(s) | 450 |
| AjiI | CACGTC | 2 cut(s) | 436, 802 |
| AleI | CACNNNNGTG | 1 cut(s) | 137 |
| AluBI | AGCT | 7 cut(s) | 400, 517, 570, 794, 819, 852, 867 |
| AluI | AGCT | 7 cut(s) | 400, 517, 570, 794, 819, 852, 867 |
| Alw21I | GWGCWC | 3 cut(s) | 13, 390, 519 |
| Alw26I | GTCTC | 3 cut(s) | 256, 442, 986 |
| AlwI | GGATC | 2 cut(s) | 272, 661 |
| Ama87I | CYCGRG | 2 cut(s) | 578, 808 |
| Aor13HI | TCCGGA | 1 cut(s) | 5 |
| AoxI | GGCC | 4 cut(s) | 783, 804, 940, 1006 |
| ApeKI | GCWGC | 5 cut(s) | 171, 406, 772, 794, 912 |
| ApoI | RAATTY | 1 cut(s) | 830 |
| AspLEI | GCGC | 5 cut(s) | 292, 365, 632, 634, 636 |
| AspS9I | GGNCC | 1 cut(s) | 688 |
| AsuC2I | CCSGG | 1 cut(s) | 296 |
| AsuHPI | GGTGA | 2 cut(s) | 124, 748 |
| AvaI | CYCGRG | 2 cut(s) | 578, 808 |
| AvaII | GGWCC | 1 cut(s) | 688 |
| BanII | GRGCYC | 2 cut(s) | 519, 759 |
| BauI | CACGAG | 1 cut(s) | 439 |
| BbrPI | CACGTG | 1 cut(s) | 453 |
| BbsI | GAAGAC | 1 cut(s) | 292 |
| Bbv12I | GWGCWC | 3 cut(s) | 13, 390, 519 |
| BbvI | GCAGC | 5 cut(s) | 158, 393, 759, 781, 924 |
| BccI | CCATC | 2 cut(s) | 323, 656 |
| BceAI | ACGGC | 5 cut(s) | 329, 350, 727, 760, 879 |
| BcnI | CCSGG | 1 cut(s) | 296 |
| BcoDI | GTCTC | 3 cut(s) | 256, 442, 986 |
| BfaI | CTAG | 1 cut(s) | 791 |
| BfrI | CTTAAG | 1 cut(s) | 91 |
| BfuAI | ACCTGC | 1 cut(s) | 482 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 948 |
| Bme1390I | CCNGG | 1 cut(s) | 296 |
| Bme18I | GGWCC | 1 cut(s) | 688 |
| BmeT110I | CYCGRG | 2 cut(s) | 578, 808 |
| BmgBI | CACGTC | 2 cut(s) | 436, 802 |
| BmgT120I | GGNCC | 1 cut(s) | 688 |
| BmiI | GGNNCC | 2 cut(s) | 458, 544 |
| BmrFI | CCNGG | 1 cut(s) | 296 |
| BmsI | GCATC | 2 cut(s) | 183, 453 |
| BpiI | GAAGAC | 1 cut(s) | 292 |
| BpmI | CTGGAG | 3 cut(s) | 223, 610, 832 |
| BpuEI | CTTGAG | 1 cut(s) | 809 |
| BpuMI | CCSGG | 1 cut(s) | 296 |
| BsaAI | YACGTR | 1 cut(s) | 453 |
| BsaHI | GRCGYC | 3 cut(s) | 222, 617, 951 |
| BsaI | GGTCTC | 1 cut(s) | 986 |
| BsaJI | CCNNGG | 4 cut(s) | 135, 553, 807, 996 |
| BsaWI | WCCGGW | 3 cut(s) | 5, 723, 972 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 212, 243, 813 |
| Bse118I | RCCGGY | 3 cut(s) | 243, 486, 884 |
| Bse1I | ACTGG | 1 cut(s) | 786 |
| BseAI | TCCGGA | 1 cut(s) | 5 |
| BseDI | CCNNGG | 4 cut(s) | 135, 553, 807, 996 |
| BseGI | GGATG | 1 cut(s) | 111 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 212, 243, 813 |
| BseNI | ACTGG | 1 cut(s) | 786 |
| BsePI | GCGCGC | 2 cut(s) | 630, 632 |
| BseRI | GAGGAG | 5 cut(s) | 107, 199, 226, 325, 535 |
| BseXI | GCAGC | 5 cut(s) | 158, 393, 759, 781, 924 |
| BseYI | CCCAGC | 1 cut(s) | 465 |
| Bsh1236I | CGCG | 5 cut(s) | 290, 503, 555, 632, 634 |
| Bsh1285I | CGRYCG | 1 cut(s) | 491 |
| BshFI | GGCC | 4 cut(s) | 785, 806, 942, 1008 |
| BsiEI | CGRYCG | 1 cut(s) | 491 |
| BsiHKAI | GWGCWC | 3 cut(s) | 13, 390, 519 |
| BsiHKCI | CYCGRG | 2 cut(s) | 578, 808 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 212, 243, 813 |
| BsmAI | GTCTC | 3 cut(s) | 256, 442, 986 |
| BsmBI | CGTCTC | 1 cut(s) | 442 |
| BsmI | GAATGC | 2 cut(s) | 102, 541 |
| BsnI | GGCC | 4 cut(s) | 785, 806, 942, 1008 |
| Bso31I | GGTCTC | 1 cut(s) | 986 |
| BsoBI | CYCGRG | 2 cut(s) | 578, 808 |
| Bsp1286I | GDGCHC | 4 cut(s) | 13, 390, 519, 759 |
| Bsp13I | TCCGGA | 1 cut(s) | 5 |
| Bsp143I | GATC | 3 cut(s) | 277, 394, 653 |
| BspANI | GGCC | 4 cut(s) | 785, 806, 942, 1008 |
| BspEI | TCCGGA | 1 cut(s) | 5 |
| BspFNI | CGCG | 5 cut(s) | 290, 503, 555, 632, 634 |
| BspLI | GGNNCC | 2 cut(s) | 458, 544 |
| BspMI | ACCTGC | 1 cut(s) | 482 |
| BspPI | GGATC | 2 cut(s) | 272, 661 |
| BspQI | GCTCTTC | 1 cut(s) | 859 |
| BspTI | CTTAAG | 1 cut(s) | 91 |
| BspTNI | GGTCTC | 1 cut(s) | 986 |
| BsrBI | CCGCTC | 3 cut(s) | 72, 234, 639 |
| BsrFI | RCCGGY | 3 cut(s) | 243, 486, 884 |
| BsrI | ACTGG | 1 cut(s) | 786 |
| BssAI | RCCGGY | 3 cut(s) | 243, 486, 884 |
| BssECI | CCNNGG | 4 cut(s) | 135, 553, 807, 996 |
| BssHII | GCGCGC | 2 cut(s) | 630, 632 |
| BssMI | GATC | 3 cut(s) | 277, 394, 653 |
| BssNI | GRCGYC | 3 cut(s) | 222, 617, 951 |
| BssSI | CACGAG | 1 cut(s) | 439 |
| Bst2BI | CACGAG | 1 cut(s) | 439 |
| Bst4CI | ACNGT | 3 cut(s) | 82, 136, 997 |
| Bst6I | CTCTTC | 2 cut(s) | 726, 859 |
| BstACI | GRCGYC | 3 cut(s) | 222, 617, 951 |
| BstAFI | CTTAAG | 1 cut(s) | 91 |
| BstBAI | YACGTR | 1 cut(s) | 453 |
| BstC8I | GCNNGC | 8 cut(s) | 232, 245, 541, 553, 632, 634, 755, 821 |
| BstDSI | CCRYGG | 3 cut(s) | 135, 553, 996 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 811 |
| BstF5I | GGATG | 1 cut(s) | 111 |
| BstFNI | CGCG | 5 cut(s) | 290, 503, 555, 632, 634 |
| BstHHI | GCGC | 5 cut(s) | 292, 365, 632, 634, 636 |
| BstKTI | GATC | 3 cut(s) | 280, 397, 656 |
| BstMAI | GTCTC | 3 cut(s) | 256, 442, 986 |
| BstMBI | GATC | 3 cut(s) | 277, 394, 653 |
| BstMCI | CGRYCG | 1 cut(s) | 491 |
| BstSCI | CCNGG | 1 cut(s) | 294 |
| BstUI | CGCG | 5 cut(s) | 290, 503, 555, 632, 634 |
| BstV1I | GCAGC | 5 cut(s) | 158, 393, 759, 781, 924 |
| BstV2I | GAAGAC | 1 cut(s) | 292 |
| BsuRI | GGCC | 4 cut(s) | 785, 806, 942, 1008 |
| BtgI | CCRYGG | 3 cut(s) | 135, 553, 996 |
| BtrI | CACGTC | 2 cut(s) | 436, 802 |
| BtsCI | GGATG | 1 cut(s) | 111 |
| BtsI | GCAGTG | 1 cut(s) | 339 |
| BtsIMutI | CAGTG | 1 cut(s) | 339 |
| BveI | ACCTGC | 1 cut(s) | 482 |
| Cac8I | GCNNGC | 8 cut(s) | 232, 245, 541, 553, 632, 634, 755, 821 |
| CfoI | GCGC | 5 cut(s) | 292, 365, 632, 634, 636 |
| Cfr10I | RCCGGY | 3 cut(s) | 243, 486, 884 |
| Cfr13I | GGNCC | 1 cut(s) | 688 |
| Cfr42I | CCGCGG | 1 cut(s) | 556 |
| CseI | GACGC | 3 cut(s) | 230, 492, 940 |
| CviAII | CATG | 1 cut(s) | 520 |
| DpnI | GATC | 3 cut(s) | 279, 396, 655 |
| DpnII | GATC | 3 cut(s) | 277, 394, 653 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 365, 668, 686 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 365, 668, 686 |
| EaeI | YGGCCR | 1 cut(s) | 940 |
| Eam1104I | CTCTTC | 2 cut(s) | 726, 859 |
| EarI | CTCTTC | 2 cut(s) | 726, 859 |
| EciI | GGCGGA | 5 cut(s) | 182, 256, 301, 538, 576 |
| Ecl136II | GAGCTC | 1 cut(s) | 517 |
| Eco147I | AGGCCT | 1 cut(s) | 1008 |
| Eco24I | GRGCYC | 2 cut(s) | 519, 759 |
| Eco31I | GGTCTC | 1 cut(s) | 986 |
| Eco32I | GATATC | 1 cut(s) | 930 |
| Eco47I | GGWCC | 1 cut(s) | 688 |
| Eco53kI | GAGCTC | 1 cut(s) | 517 |
| Eco72I | CACGTG | 1 cut(s) | 453 |
| Eco88I | CYCGRG | 2 cut(s) | 578, 808 |
| EcoICRI | GAGCTC | 1 cut(s) | 517 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 811 |
| EcoRI | GAATTC | 1 cut(s) | 830 |
| EcoRV | GATATC | 1 cut(s) | 930 |
| EcoT38I | GRGCYC | 2 cut(s) | 519, 759 |
| Esp3I | CGTCTC | 1 cut(s) | 442 |
| FaeI | CATG | 1 cut(s) | 523 |
| FaiI | YATR | 1 cut(s) | 521 |
| FatI | CATG | 1 cut(s) | 519 |
| FauI | CCCGC | 3 cut(s) | 239, 560, 768 |
| FblI | GTMKAC | 1 cut(s) | 672 |
| FokI | GGATG | 1 cut(s) | 98 |
| FriOI | GRGCYC | 2 cut(s) | 519, 759 |
| FspBI | CTAG | 1 cut(s) | 791 |
| GlaI | GCGC | 5 cut(s) | 291, 364, 631, 633, 635 |
| GsaI | CCCAGC | 1 cut(s) | 469 |
| GsuI | CTGGAG | 3 cut(s) | 223, 610, 832 |
| HaeIII | GGCC | 4 cut(s) | 785, 806, 942, 1008 |
| HgaI | GACGC | 3 cut(s) | 230, 492, 940 |
| HhaI | GCGC | 5 cut(s) | 292, 365, 632, 634, 636 |
| Hin1I | GRCGYC | 3 cut(s) | 222, 617, 951 |
| Hin1II | CATG | 1 cut(s) | 523 |
| Hin6I | GCGC | 5 cut(s) | 290, 363, 630, 632, 634 |
| HinP1I | GCGC | 5 cut(s) | 290, 363, 630, 632, 634 |
| HincII | GTYRAC | 1 cut(s) | 673 |
| HindII | GTYRAC | 1 cut(s) | 673 |
| HinfI | GANTC | 9 cut(s) | 162, 249, 263, 509, 576, 680, 843, 876, 935 |
| HphI | GGTGA | 2 cut(s) | 124, 748 |
| Hpy166II | GTNNAC | 1 cut(s) | 673 |
| Hpy188III | TCNNGA | 6 cut(s) | 6, 319, 376, 532, 580, 810 |
| Hpy8I | GTNNAC | 1 cut(s) | 673 |
| HpyAV | CCTTC | 3 cut(s) | 316, 439, 807 |
| HpyCH4III | ACNGT | 3 cut(s) | 82, 136, 997 |
| HpyCH4IV | ACGT | 5 cut(s) | 435, 452, 591, 617, 801 |
| HpyCH4V | TGCA | 3 cut(s) | 174, 444, 539 |
| HpySE526I | ACGT | 5 cut(s) | 435, 452, 591, 617, 801 |
| Hsp92I | GRCGYC | 3 cut(s) | 222, 617, 951 |
| Hsp92II | CATG | 1 cut(s) | 523 |
| HspAI | GCGC | 5 cut(s) | 290, 363, 630, 632, 634 |
| Kpn2I | TCCGGA | 1 cut(s) | 5 |
| KroI | GCCGGC | 1 cut(s) | 243 |
| KroNI | GCCGGC | 1 cut(s) | 245 |
| KspI | CCGCGG | 1 cut(s) | 556 |
| Kzo9I | GATC | 3 cut(s) | 277, 394, 653 |
| LguI | GCTCTTC | 1 cut(s) | 859 |
| Lsp1109I | GCAGC | 5 cut(s) | 158, 393, 759, 781, 924 |
| LweI | GCATC | 2 cut(s) | 183, 453 |
| MaeI | CTAG | 1 cut(s) | 791 |
| MaeII | ACGT | 5 cut(s) | 435, 452, 591, 617, 801 |
| MaeIII | GTNAC | 2 cut(s) | 130, 422 |
| MalI | GATC | 3 cut(s) | 279, 396, 655 |
| MbiI | CCGCTC | 3 cut(s) | 72, 234, 639 |
| MboI | GATC | 3 cut(s) | 277, 394, 653 |
| MboII | GAAGA | 3 cut(s) | 292, 743, 846 |
| MfeI | CAATTG | 1 cut(s) | 692 |
| MhlI | GDGCHC | 4 cut(s) | 13, 390, 519, 759 |
| MluCI | AATT | 3 cut(s) | 692, 830, 1017 |
| MlyI | GAGTC | 6 cut(s) | 258, 503, 570, 674, 837, 944 |
| MmeI | TCCRAC | 5 cut(s) | 486, 598, 645, 759, 878 |
| MroI | TCCGGA | 1 cut(s) | 5 |
| MroNI | GCCGGC | 1 cut(s) | 243 |
| MseI | TTAA | 5 cut(s) | 38, 77, 92, 1011, 1030 |
| MslI | CAYNNNNRTG | 1 cut(s) | 137 |
| MspA1I | CMGCKG | 3 cut(s) | 171, 555, 772 |
| MspCI | CTTAAG | 1 cut(s) | 91 |
| MspR9I | CCNGG | 1 cut(s) | 296 |
| MunI | CAATTG | 1 cut(s) | 692 |
| Mva1269I | GAATGC | 2 cut(s) | 102, 541 |
| MvnI | CGCG | 5 cut(s) | 290, 503, 555, 632, 634 |
| NaeI | GCCGGC | 1 cut(s) | 245 |
| NciI | CCSGG | 1 cut(s) | 296 |
| NdeII | GATC | 3 cut(s) | 277, 394, 653 |
| NgoMIV | GCCGGC | 1 cut(s) | 243 |
| NlaIII | CATG | 1 cut(s) | 523 |
| NlaIV | GGNNCC | 2 cut(s) | 458, 544 |
| NmeAIII | GCCGAG | 2 cut(s) | 353, 729 |
| NmuCI | GTSAC | 2 cut(s) | 130, 422 |
| OliI | CACNNNNGTG | 1 cut(s) | 137 |
| PaeR7I | CTCGAG | 1 cut(s) | 578 |
| PauI | GCGCGC | 2 cut(s) | 630, 632 |
| PceI | AGGCCT | 1 cut(s) | 1008 |
| PciSI | GCTCTTC | 1 cut(s) | 859 |
| PcsI | WCGNNNNNNNCGW | 9 cut(s) | 132, 354, 390, 432, 657, 666, 675, 750, 960 |
| PctI | GAATGC | 2 cut(s) | 102, 541 |
| PdiI | GCCGGC | 1 cut(s) | 245 |
| PfeI | GAWTC | 3 cut(s) | 162, 263, 876 |
| PleI | GAGTC | 6 cut(s) | 257, 503, 570, 674, 837, 943 |
| PmaCI | CACGTG | 1 cut(s) | 453 |
| PmlI | CACGTG | 1 cut(s) | 453 |
| PpsI | GAGTC | 6 cut(s) | 257, 503, 570, 674, 837, 943 |
| Ppu21I | YACGTR | 1 cut(s) | 453 |
| Psp124BI | GAGCTC | 1 cut(s) | 519 |
| PspCI | CACGTG | 1 cut(s) | 453 |
| PspFI | CCCAGC | 1 cut(s) | 465 |
| PspN4I | GGNNCC | 2 cut(s) | 458, 544 |
| PspPI | GGNCC | 1 cut(s) | 688 |
| PteI | GCGCGC | 2 cut(s) | 630, 632 |
| RseI | CAYNNNNRTG | 1 cut(s) | 137 |
| SacI | GAGCTC | 1 cut(s) | 519 |
| SacII | CCGCGG | 1 cut(s) | 556 |
| SalI | GTCGAC | 1 cut(s) | 671 |
| SapI | GCTCTTC | 1 cut(s) | 859 |
| SaqAI | TTAA | 5 cut(s) | 38, 77, 92, 1011, 1030 |
| Sau3AI | GATC | 3 cut(s) | 277, 394, 653 |
| Sau96I | GGNCC | 1 cut(s) | 688 |
| SchI | GAGTC | 6 cut(s) | 258, 503, 570, 674, 837, 944 |
| ScrFI | CCNGG | 1 cut(s) | 296 |
| SduI | GDGCHC | 4 cut(s) | 13, 390, 519, 759 |
| SfaNI | GCATC | 2 cut(s) | 183, 453 |
| Sfr274I | CTCGAG | 1 cut(s) | 578 |
| Sfr303I | CCGCGG | 1 cut(s) | 556 |
| SgrBI | CCGCGG | 1 cut(s) | 556 |
| SgrDI | CGTCGACG | 1 cut(s) | 671 |
| SinI | GGWCC | 1 cut(s) | 688 |
| SlaI | CTCGAG | 1 cut(s) | 578 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 137 |
| SmlI | CTYRAG | 3 cut(s) | 91, 578, 824 |
| SmoI | CTYRAG | 3 cut(s) | 91, 578, 824 |
| Sse9I | AATT | 3 cut(s) | 692, 830, 1017 |
| SseBI | AGGCCT | 1 cut(s) | 1008 |
| SspMI | CTAG | 1 cut(s) | 791 |
| SstI | GAGCTC | 1 cut(s) | 519 |
| StuI | AGGCCT | 1 cut(s) | 1008 |
| StyD4I | CCNGG | 1 cut(s) | 294 |
| TaaI | ACNGT | 3 cut(s) | 82, 136, 997 |
| TaiI | ACGT | 5 cut(s) | 438, 455, 594, 620, 804 |
| TaqI | TCGA | 8 cut(s) | 377, 384, 447, 531, 579, 660, 672, 954 |
| TasI | AATT | 3 cut(s) | 692, 830, 1017 |
| TfiI | GAWTC | 3 cut(s) | 162, 263, 876 |
| Tru1I | TTAA | 5 cut(s) | 38, 77, 92, 1011, 1030 |
| Tru9I | TTAA | 5 cut(s) | 38, 77, 92, 1011, 1030 |
| TscAI | CASTG | 1 cut(s) | 346 |
| TseFI | GTSAC | 2 cut(s) | 130, 422 |
| TseI | GCWGC | 5 cut(s) | 171, 406, 772, 794, 912 |
| Tsp45I | GTSAC | 2 cut(s) | 130, 422 |
| TspDTI | ATGAA | 1 cut(s) | 135 |
| TspRI | CASTG | 1 cut(s) | 346 |
| Vha464I | CTTAAG | 1 cut(s) | 91 |
| VpaK11BI | GGWCC | 1 cut(s) | 688 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 811 |
| XapI | RAATTY | 1 cut(s) | 830 |
| XhoI | CTCGAG | 1 cut(s) | 578 |
| XmiI | GTMKAC | 1 cut(s) | 672 |
| XspI | CTAG | 1 cut(s) | 791 |
| ZraI | GACGTC | 1 cut(s) | 618 |