Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005991.1

Orthogroup ID

OG0005662

Physical Location & Seq

Genomic Coordinates Forward (+)

33735 .. 34052

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005991.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgcccccttccgagtctccagccgcggagtatctccggctgaatccgccaccgccatcgcctctgatcgagattggcaacctcagccgccgccaaacaactacgacgtccaactccagcccgcgccgctcctactccattggatcgttcgactacctcgttgacgacaactccgaggtcggattgtccaatgccagaaaccgctggtctgatcggaaagaagaggtgattgttgttctcggcgagctcccgccgccgctgccgtcggaggccactctaggcactgacgtggccgtcgaaggccactctaggcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

105

Amino Acids

11.48

Weight (kDa)

5.06

Isoelectric Point (pI)

91.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60220
fragaria_vesca	FvH4_7g08860
malus_domestica	MD02G1223200.v1.1 MD07G1091500.v1.1
prunus_persica	Prupe.2G116700_v2.0.a1
pyrus_communis	pycom07g07480 pycom15g32160
rosa_chinensis	RchiOBHm_Chr1g0344271 RchiOBHm_Chr7g0197351
rosa_laevigata	RLG00000003768 RLG00000015102 RLG00000019331 RLG00000025671 RLG00000028912
rosa_multiflora	Rmu_sc0000019.1_g000012 Rmu_sc0000338.1_g000018 Rmu_sc0003703.1_g000004 Rmu_sc0005991.1_g000007 Rmu_sc0016684.1_g000002 Rmu_sc0016685.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309960
rosa_rugosa	Rorug01G0172700
rosa_samantha	Rh1AG188600 Rh1BG155100 Rh1CG174400 Rh2CG262100 Rh3BG248600
rosa_wichuraiana	Rw1G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
AatII	GACGTC	1 cut(s)	110
AccBSI	CCGCTC	1 cut(s)	129
AccII	CGCG	2 cut(s)	26, 124
AclWI	GGATC	1 cut(s)	151
AcoI	YGGCCR	1 cut(s)	291
AcyI	GRCGYC	1 cut(s)	107
AjiI	CACGTC	1 cut(s)	289
AleI	CACNNNNGTG	1 cut(s)	287
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	1 cut(s)	151
AoxI	GGCC	3 cut(s)	270, 291, 301
ApeKI	GCWGC	1 cut(s)	259
AspLEI	GCGC	1 cut(s)	126
AsuHPI	GGTGA	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	249
BbvCI	CCTCAGC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	246
BccI	CCATC	1 cut(s)	64
BceAI	ACGGC	2 cut(s)	247, 278
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	2 cut(s)	278, 309
BisI	GCNGC	7 cut(s)	24, 88, 91, 127, 254, 257, 260
BlsI	GCNGC	7 cut(s)	25, 89, 92, 128, 255, 258, 261
BmgBI	CACGTC	1 cut(s)	289
BpmI	CTGGAG	1 cut(s)	100
Bpu10I	CCTNAGC	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	24, 174
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
BseDI	CCNNGG	2 cut(s)	24, 174
BseMII	CTCAG	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	246
Bsh1236I	CGCG	2 cut(s)	26, 124
BshFI	GGCC	3 cut(s)	272, 293, 303
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	21
BsnI	GGCC	3 cut(s)	272, 293, 303
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	3 cut(s)	66, 143, 211
BspANI	GGCC	3 cut(s)	272, 293, 303
BspCNI	CTCAG	1 cut(s)	96
BspFNI	CGCG	2 cut(s)	26, 124
BspPI	GGATC	1 cut(s)	151
BsrBI	CCGCTC	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	24, 174
BssMI	GATC	3 cut(s)	66, 143, 211
BssNI	GRCGYC	1 cut(s)	107
Bst6I	CTCTTC	1 cut(s)	216
BstACI	GRCGYC	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	122, 245
BstDEI	CTNAG	1 cut(s)	83
BstDSI	CCRYGG	1 cut(s)	24
BstFNI	CGCG	2 cut(s)	26, 124
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	3 cut(s)	69, 146, 214
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	3 cut(s)	66, 143, 211
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 84, 126, 253, 259
BstUI	CGCG	2 cut(s)	26, 124
BstV1I	GCAGC	1 cut(s)	246
BsuRI	GGCC	3 cut(s)	272, 293, 303
BtgI	CCRYGG	1 cut(s)	24
BtgZI	GCGATG	1 cut(s)	42
BtrI	CACGTC	1 cut(s)	289
BtsIMutI	CAGTG	2 cut(s)	282, 313
Cac8I	GCNNGC	2 cut(s)	122, 245
CfoI	GCGC	1 cut(s)	126
Cfr42I	CCGCGG	1 cut(s)	27
CviJI	RGCY	8 cut(s)	23, 40, 87, 120, 247, 272, 293, 303
CviKI_1	RGCY	8 cut(s)	23, 40, 87, 120, 247, 272, 293, 303
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	3 cut(s)	68, 145, 213
DpnII	GATC	3 cut(s)	66, 143, 211
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
EciI	GGCGGA	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	249
FauI	CCCGC	2 cut(s)	129, 258
Fnu4HI	GCNGC	7 cut(s)	24, 88, 91, 127, 254, 257, 260
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	7 cut(s)	24, 88, 91, 127, 254, 257, 260
FspBI	CTAG	2 cut(s)	278, 309
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	7 cut(s)	24, 88, 91, 127, 254, 257, 260
GsuI	CTGGAG	1 cut(s)	100
HaeIII	GGCC	3 cut(s)	272, 293, 303
HapII	CCGG	1 cut(s)	37
HhaI	GCGC	1 cut(s)	126
Hin1I	GRCGYC	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	2 cut(s)	14, 43
HpaII	CCGG	1 cut(s)	37
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	7 cut(s)	13, 66, 175, 182, 211, 216, 268
Hpy188III	TCNNGA	1 cut(s)	70
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	3 cut(s)	109, 268, 299
HpyAV	CCTTC	2 cut(s)	18, 293
HpyCH4IV	ACGT	2 cut(s)	107, 288
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 84, 126, 253, 259
HpyF3I	CTNAG	1 cut(s)	83
HpySE526I	ACGT	2 cut(s)	107, 288
Hsp92I	GRCGYC	1 cut(s)	107
HspAI	GCGC	1 cut(s)	124
KspI	CCGCGG	1 cut(s)	27
Kzo9I	GATC	3 cut(s)	66, 143, 211
LmnI	GCTCC	2 cut(s)	134, 252
LpnPI	CCDG	5 cut(s)	33, 50, 130, 190, 208
Lsp1109I	GCAGC	1 cut(s)	246
MaeI	CTAG	2 cut(s)	278, 309
MaeII	ACGT	2 cut(s)	107, 288
MalI	GATC	3 cut(s)	68, 145, 213
MbiI	CCGCTC	1 cut(s)	129
MboI	GATC	3 cut(s)	66, 143, 211
MboII	GAAGA	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	3 cut(s)	135, 160, 246
MnlI	CCTC	6 cut(s)	72, 92, 167, 169, 217, 262
MslI	CAYNNNNRTG	1 cut(s)	287
MspA1I	CMGCKG	3 cut(s)	26, 204, 259
MspI	CCGG	1 cut(s)	37
MvnI	CGCG	2 cut(s)	26, 124
MwoI	GCNNNNNNNGC	5 cut(s)	46, 84, 126, 253, 259
NdeII	GATC	3 cut(s)	66, 143, 211
NmeAIII	GCCGAG	1 cut(s)	219
OliI	CACNNNNGTG	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	3 cut(s)	156, 171, 294
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	7 cut(s)	25, 89, 92, 128, 255, 258, 261
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Psp124BI	GAGCTC	1 cut(s)	249
RseI	CAYNNNNRTG	1 cut(s)	287
SacI	GAGCTC	1 cut(s)	249
SacII	CCGCGG	1 cut(s)	27
SatI	GCNGC	7 cut(s)	24, 88, 91, 127, 254, 257, 260
Sau3AI	GATC	3 cut(s)	66, 143, 211
SchI	GAGTC	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	7 cut(s)	84, 110, 159, 180, 228, 249, 291
Sfr303I	CCGCGG	1 cut(s)	27
SgrBI	CCGCGG	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	287
SspMI	CTAG	2 cut(s)	278, 309
SstI	GAGCTC	1 cut(s)	249
TaiI	ACGT	2 cut(s)	110, 291
TaqI	TCGA	3 cut(s)	69, 150, 297
TauI	GCSGC	6 cut(s)	26, 90, 93, 129, 256, 259
TfiI	GAWTC	1 cut(s)	43
TscAI	CASTG	1 cut(s)	289
TseI	GCWGC	1 cut(s)	259
TspRI	CASTG	1 cut(s)	289
XspI	CTAG	2 cut(s)	278, 309
ZraI	GACGTC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.