Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005662

Physical Location & Seq

Genomic Coordinates Forward (+)

25356676 .. 25359217

Gene Structure 2542 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG155100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGTCCGGAGCACCGCCGCCACCGCCATTATTAACCTCCACCACCTCGCCACCTCACAACAACCGCTCATTGACCGTGAAAACCTTAAGTCCGAGCATTCTCATCATCCTCCTCATCGTCGTCGTCACCGTGGTGGCTTCATTTTCCCTCTGCCGAATCCTCCGCTGCATCAACAACCGCTTCCTCCGCCACGTCACTCCCTCCTCCGGGGACGACTCCCCCGCCCGCGCCTCCAGCCGGCTAGTCTCTCCTGCCGAATCCGCAGCCGCCGCGCTCCCGGTCTTCGCCTTCTCCGCCATCAAGAACCGCCGAGCCTCCTCCACCGCAGTCGTCGCCGCCGACTGCGCCGTCTGCCTCTCGAAGTTCGAGCACGACGATCAGCTCCGGTTGCTCCCTCTCTGCTGTCACGCCTTCCACGTATCGTGCATCGACACGTGGCTCCACTCCCAGCAGACCTGCCCTCTCTGCCGGTCGCCGATTTCCGCGTCCGACTCCGAGCTCATGACTCTCGTCGAGAATGCAGGCTCCTCCGCCCGCGGCGGCGGCGGCGATAGCTTCCGGCTCGAGATTGGCAACGTCAGCCGCCGCCAAACAACTACGACGTCCAACTCCAGCGCGCGCCGCTCCTACTCCATCGGATCGTTCGACTACCTCGTCGACGACGACTCGGAGGTCCAATTGTCCAATGCCAGAAACGGCTCGTCTGATCGGAAAGAAGAGGTGATTGTCGTTCTCGGCGAGCCCCCGCCGCCGCTGCCGTCGGAGGCCAGTCTAGCTGCTGACGTGGCCTCGGGAAGGAGCTGGCTCAAGGAATTCGTGGATAGACTCTCCAGCTCTTCTCTACGAAGCTCCGGCAGATTCTTTACCGGCAGTAGCCGTCGGAGTGAGATAGGCGGCACGGGAGAGTGGATATCGGAGTCCGGCCAAGTCGGCGTCGAGTTCTCCGAGTATTTCCGGTGGTTATCGGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

324

Amino Acids

34.75

Weight (kDa)

6.6

Isoelectric Point (pI)

70.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	114 - 157	8.4e-13	Ring finger domain
zf-RING_11	PF17123	114 - 143	8.3e-09	RING-like zinc finger
zf-rbx1	PF12678	124 - 157	3.3e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60220
fragaria_vesca	FvH4_7g08860
malus_domestica	MD02G1223200.v1.1 MD07G1091500.v1.1
prunus_persica	Prupe.2G116700_v2.0.a1
pyrus_communis	pycom07g07480 pycom15g32160
rosa_chinensis	RchiOBHm_Chr1g0344271 RchiOBHm_Chr7g0197351
rosa_laevigata	RLG00000003768 RLG00000015102 RLG00000019331 RLG00000025671 RLG00000028912
rosa_multiflora	Rmu_sc0000019.1_g000012 Rmu_sc0000338.1_g000018 Rmu_sc0003703.1_g000004 Rmu_sc0005991.1_g000007 Rmu_sc0016684.1_g000002 Rmu_sc0016685.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309960
rosa_rugosa	Rorug01G0172700
rosa_samantha	Rh1AG188600 Rh1BG155100 Rh1CG174400 Rh2CG262100 Rh3BG248600
rosa_wichuraiana	Rw1G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	347, 653, 671
AatII	GACGTC	1 cut(s)	605
Acc36I	ACCTGC	1 cut(s)	464
AccBSI	CCGCTC	2 cut(s)	66, 624
AccI	GTMKAC	1 cut(s)	657
AccII	CGCG	6 cut(s)	228, 272, 485, 537, 617, 619
AccIII	TCCGGA	1 cut(s)	5
AclWI	GGATC	1 cut(s)	646
AcoI	YGGCCR	1 cut(s)	922
AcsI	RAATTY	1 cut(s)	812
AcvI	CACGTG	1 cut(s)	435
AcyI	GRCGYC	2 cut(s)	602, 933
AfiI	CCNNNNNNNGG	4 cut(s)	206, 207, 237, 795
AflII	CTTAAG	1 cut(s)	85
AflIII	ACRYGT	1 cut(s)	432
AjiI	CACGTC	2 cut(s)	193, 784
AleI	CACNNNNGTG	1 cut(s)	131
AluBI	AGCT	7 cut(s)	382, 499, 555, 776, 801, 834, 849
AluI	AGCT	7 cut(s)	382, 499, 555, 776, 801, 834, 849
Alw21I	GWGCWC	3 cut(s)	13, 372, 501
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	1 cut(s)	646
Ama87I	CYCGRG	2 cut(s)	563, 790
Aor13HI	TCCGGA	1 cut(s)	5
AoxI	GGCC	3 cut(s)	765, 786, 922
ApeKI	GCWGC	4 cut(s)	165, 263, 754, 776
ApoI	RAATTY	1 cut(s)	812
AspLEI	GCGC	6 cut(s)	230, 274, 347, 617, 619, 621
AspS9I	GGNCC	1 cut(s)	673
AsuC2I	CCSGG	2 cut(s)	208, 278
AsuHPI	GGTGA	2 cut(s)	118, 733
AvaI	CYCGRG	2 cut(s)	563, 790
AvaII	GGWCC	1 cut(s)	673
BanII	GRGCYC	2 cut(s)	501, 744
BbrPI	CACGTG	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	274
Bbv12I	GWGCWC	3 cut(s)	13, 372, 501
BbvI	GCAGC	4 cut(s)	152, 275, 741, 763
BccI	CCATC	2 cut(s)	305, 641
BceAI	ACGGC	4 cut(s)	332, 712, 742, 861
BcnI	CCSGG	2 cut(s)	208, 278
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	2 cut(s)	242, 773
BfrI	CTTAAG	1 cut(s)	85
BfuAI	ACCTGC	1 cut(s)	464
BglI	GCCNNNNNGGC	1 cut(s)	930
Bme1390I	CCNGG	2 cut(s)	208, 278
Bme18I	GGWCC	1 cut(s)	673
BmeT110I	CYCGRG	2 cut(s)	563, 790
BmgBI	CACGTC	2 cut(s)	193, 784
BmgT120I	GGNCC	1 cut(s)	673
BmiI	GGNNCC	2 cut(s)	440, 526
BmrFI	CCNGG	2 cut(s)	208, 278
BmsI	GCATC	2 cut(s)	177, 435
BoxI	GACNNNNGTC	1 cut(s)	509
BpiI	GAAGAC	1 cut(s)	274
BpmI	CTGGAG	3 cut(s)	217, 595, 814
BpuEI	CTTGAG	1 cut(s)	791
BpuMI	CCSGG	2 cut(s)	208, 278
BsaAI	YACGTR	2 cut(s)	418, 435
BsaHI	GRCGYC	2 cut(s)	602, 933
BsaJI	CCNNGG	4 cut(s)	129, 207, 535, 789
BsaWI	WCCGGW	3 cut(s)	5, 384, 954
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 207, 237, 795
Bse118I	RCCGGY	3 cut(s)	237, 468, 866
Bse1I	ACTGG	1 cut(s)	768
BseAI	TCCGGA	1 cut(s)	5
BseDI	CCNNGG	4 cut(s)	129, 207, 535, 789
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	4 cut(s)	206, 207, 237, 795
BseNI	ACTGG	1 cut(s)	768
BsePI	GCGCGC	2 cut(s)	615, 617
BseRI	GAGGAG	4 cut(s)	101, 193, 307, 517
BseXI	GCAGC	4 cut(s)	152, 275, 741, 763
BseYI	CCCAGC	1 cut(s)	447
Bsh1236I	CGCG	6 cut(s)	228, 272, 485, 537, 617, 619
Bsh1285I	CGRYCG	1 cut(s)	473
BshFI	GGCC	3 cut(s)	767, 788, 924
BsiEI	CGRYCG	1 cut(s)	473
BsiHKAI	GWGCWC	3 cut(s)	13, 372, 501
BsiHKCI	CYCGRG	2 cut(s)	563, 790
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	4 cut(s)	206, 207, 237, 795
BsmAI	GTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	224
BsmI	GAATGC	2 cut(s)	96, 523
BsnI	GGCC	3 cut(s)	767, 788, 924
BsoBI	CYCGRG	2 cut(s)	563, 790
Bsp1286I	GDGCHC	4 cut(s)	13, 372, 501, 744
Bsp13I	TCCGGA	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	376, 638, 706
BspANI	GGCC	3 cut(s)	767, 788, 924
BspEI	TCCGGA	1 cut(s)	5
BspFNI	CGCG	6 cut(s)	228, 272, 485, 537, 617, 619
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	2 cut(s)	440, 526
BspMI	ACCTGC	1 cut(s)	464
BspPI	GGATC	1 cut(s)	646
BspQI	GCTCTTC	1 cut(s)	841
BspTI	CTTAAG	1 cut(s)	85
BsrBI	CCGCTC	2 cut(s)	66, 624
BsrFI	RCCGGY	3 cut(s)	237, 468, 866
BsrI	ACTGG	1 cut(s)	768
BssAI	RCCGGY	3 cut(s)	237, 468, 866
BssECI	CCNNGG	4 cut(s)	129, 207, 535, 789
BssHII	GCGCGC	2 cut(s)	615, 617
BssMI	GATC	3 cut(s)	376, 638, 706
BssNI	GRCGYC	2 cut(s)	602, 933
Bst4CI	ACNGT	2 cut(s)	76, 130
Bst6I	CTCTTC	2 cut(s)	711, 841
BstACI	GRCGYC	2 cut(s)	602, 933
BstAFI	CTTAAG	1 cut(s)	85
BstBAI	YACGTR	2 cut(s)	418, 435
BstC8I	GCNNGC	8 cut(s)	226, 239, 523, 535, 617, 619, 740, 803
BstDSI	CCRYGG	2 cut(s)	129, 535
BstENI	CCTNNNNNAGG	1 cut(s)	793
BstF5I	GGATG	1 cut(s)	105
BstFNI	CGCG	6 cut(s)	228, 272, 485, 537, 617, 619
BstHHI	GCGC	6 cut(s)	230, 274, 347, 617, 619, 621
BstKTI	GATC	3 cut(s)	379, 641, 709
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	3 cut(s)	376, 638, 706
BstMCI	CGRYCG	1 cut(s)	473
BstPAI	GACNNNNGTC	1 cut(s)	509
BstSCI	CCNGG	2 cut(s)	206, 276
BstUI	CGCG	6 cut(s)	228, 272, 485, 537, 617, 619
BstV1I	GCAGC	4 cut(s)	152, 275, 741, 763
BstV2I	GAAGAC	1 cut(s)	274
BsuRI	GGCC	3 cut(s)	767, 788, 924
BtgI	CCRYGG	2 cut(s)	129, 535
BtrI	CACGTC	2 cut(s)	193, 784
BtsCI	GGATG	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	464
Cac8I	GCNNGC	8 cut(s)	226, 239, 523, 535, 617, 619, 740, 803
CciI	TCATGA	1 cut(s)	501
CfoI	GCGC	6 cut(s)	230, 274, 347, 617, 619, 621
Cfr10I	RCCGGY	3 cut(s)	237, 468, 866
Cfr13I	GGNCC	1 cut(s)	673
Cfr42I	CCGCGG	1 cut(s)	538
CseI	GACGC	2 cut(s)	474, 922
CviAII	CATG	1 cut(s)	502
DpnI	GATC	3 cut(s)	378, 640, 708
DpnII	GATC	3 cut(s)	376, 638, 706
DrdI	GACNNNNNNGTC	3 cut(s)	347, 653, 671
DseDI	GACNNNNNNGTC	3 cut(s)	347, 653, 671
EaeI	YGGCCR	1 cut(s)	922
Eam1104I	CTCTTC	2 cut(s)	711, 841
EarI	CTCTTC	2 cut(s)	711, 841
EciI	GGCGGA	3 cut(s)	176, 283, 520
Ecl136II	GAGCTC	1 cut(s)	499
Eco24I	GRGCYC	2 cut(s)	501, 744
Eco32I	GATATC	1 cut(s)	912
Eco47I	GGWCC	1 cut(s)	673
Eco53kI	GAGCTC	1 cut(s)	499
Eco72I	CACGTG	1 cut(s)	435
Eco88I	CYCGRG	2 cut(s)	563, 790
EcoICRI	GAGCTC	1 cut(s)	499
EcoNI	CCTNNNNNAGG	1 cut(s)	793
EcoRI	GAATTC	1 cut(s)	812
EcoRV	GATATC	1 cut(s)	912
EcoT38I	GRGCYC	2 cut(s)	501, 744
FaeI	CATG	1 cut(s)	505
FaiI	YATR	2 cut(s)	503, 973
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	1 cut(s)	501
FauI	CCCGC	4 cut(s)	229, 233, 542, 753
FblI	GTMKAC	1 cut(s)	657
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	2 cut(s)	501, 744
FspBI	CTAG	2 cut(s)	242, 773
GlaI	GCGC	6 cut(s)	229, 273, 346, 616, 618, 620
GsaI	CCCAGC	1 cut(s)	451
GsuI	CTGGAG	3 cut(s)	217, 595, 814
HaeIII	GGCC	3 cut(s)	767, 788, 924
HgaI	GACGC	2 cut(s)	474, 922
HhaI	GCGC	6 cut(s)	230, 274, 347, 617, 619, 621
Hin1I	GRCGYC	2 cut(s)	602, 933
Hin1II	CATG	1 cut(s)	505
Hin6I	GCGC	6 cut(s)	228, 272, 345, 615, 617, 619
HinP1I	GCGC	6 cut(s)	228, 272, 345, 615, 617, 619
HincII	GTYRAC	1 cut(s)	658
HindII	GTYRAC	1 cut(s)	658
HinfI	GANTC	9 cut(s)	156, 215, 257, 491, 505, 665, 825, 858, 917
HphI	GGTGA	2 cut(s)	118, 733
Hpy166II	GTNNAC	1 cut(s)	658
Hpy188III	TCNNGA	7 cut(s)	6, 301, 358, 502, 514, 565, 792
Hpy8I	GTNNAC	1 cut(s)	658
HpyAV	CCTTC	3 cut(s)	298, 421, 789
HpyCH4III	ACNGT	2 cut(s)	76, 130
HpyCH4IV	ACGT	6 cut(s)	192, 417, 434, 576, 602, 783
HpyCH4V	TGCA	3 cut(s)	168, 426, 521
HpySE526I	ACGT	6 cut(s)	192, 417, 434, 576, 602, 783
Hsp92I	GRCGYC	2 cut(s)	602, 933
Hsp92II	CATG	1 cut(s)	505
HspAI	GCGC	6 cut(s)	228, 272, 345, 615, 617, 619
Kpn2I	TCCGGA	1 cut(s)	5
KroI	GCCGGC	1 cut(s)	237
KroNI	GCCGGC	1 cut(s)	239
KspI	CCGCGG	1 cut(s)	538
Kzo9I	GATC	3 cut(s)	376, 638, 706
LguI	GCTCTTC	1 cut(s)	841
LmnI	GCTCC	9 cut(s)	8, 279, 387, 396, 444, 530, 629, 798, 854
Lsp1109I	GCAGC	4 cut(s)	152, 275, 741, 763
LweI	GCATC	2 cut(s)	177, 435
MaeI	CTAG	2 cut(s)	242, 773
MaeII	ACGT	6 cut(s)	192, 417, 434, 576, 602, 783
MaeIII	GTNAC	3 cut(s)	124, 193, 404
MalI	GATC	3 cut(s)	378, 640, 708
MbiI	CCGCTC	2 cut(s)	66, 624
MboI	GATC	3 cut(s)	376, 638, 706
MboII	GAAGA	3 cut(s)	274, 728, 828
MfeI	CAATTG	1 cut(s)	677
MhlI	GDGCHC	4 cut(s)	13, 372, 501, 744
MluCI	AATT	2 cut(s)	677, 812
MlyI	GAGTC	6 cut(s)	209, 485, 499, 659, 819, 926
MmeI	TCCRAC	4 cut(s)	513, 630, 741, 860
MroI	TCCGGA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	237
MseI	TTAA	2 cut(s)	32, 86
MslI	CAYNNNNRTG	1 cut(s)	131
MspA1I	CMGCKG	3 cut(s)	165, 537, 754
MspCI	CTTAAG	1 cut(s)	85
MspR9I	CCNGG	2 cut(s)	208, 278
MunI	CAATTG	1 cut(s)	677
Mva1269I	GAATGC	2 cut(s)	96, 523
MvnI	CGCG	6 cut(s)	228, 272, 485, 537, 617, 619
NaeI	GCCGGC	1 cut(s)	239
NciI	CCSGG	2 cut(s)	208, 278
NdeII	GATC	3 cut(s)	376, 638, 706
NgoMIV	GCCGGC	1 cut(s)	237
NlaIII	CATG	1 cut(s)	505
NlaIV	GGNNCC	2 cut(s)	440, 526
NmeAIII	GCCGAG	2 cut(s)	335, 714
NmuCI	GTSAC	3 cut(s)	124, 193, 404
OliI	CACNNNNGTG	1 cut(s)	131
PaeR7I	CTCGAG	1 cut(s)	563
PagI	TCATGA	1 cut(s)	501
PauI	GCGCGC	2 cut(s)	615, 617
PciSI	GCTCTTC	1 cut(s)	841
PcsI	WCGNNNNNNNCGW	9 cut(s)	126, 336, 372, 414, 642, 651, 660, 735, 942
PctI	GAATGC	2 cut(s)	96, 523
PdiI	GCCGGC	1 cut(s)	239
PfeI	GAWTC	3 cut(s)	156, 257, 858
PleI	GAGTC	6 cut(s)	209, 485, 499, 659, 819, 925
PmaCI	CACGTG	1 cut(s)	435
PmlI	CACGTG	1 cut(s)	435
PpsI	GAGTC	6 cut(s)	209, 485, 499, 659, 819, 925
Ppu21I	YACGTR	2 cut(s)	418, 435
PshAI	GACNNNNGTC	1 cut(s)	509
Psp124BI	GAGCTC	1 cut(s)	501
PspCI	CACGTG	1 cut(s)	435
PspFI	CCCAGC	1 cut(s)	447
PspN4I	GGNNCC	2 cut(s)	440, 526
PspPI	GGNCC	1 cut(s)	673
PteI	GCGCGC	2 cut(s)	615, 617
RseI	CAYNNNNRTG	1 cut(s)	131
SacI	GAGCTC	1 cut(s)	501
SacII	CCGCGG	1 cut(s)	538
SalI	GTCGAC	1 cut(s)	656
SapI	GCTCTTC	1 cut(s)	841
SaqAI	TTAA	2 cut(s)	32, 86
Sau3AI	GATC	3 cut(s)	376, 638, 706
Sau96I	GGNCC	1 cut(s)	673
SchI	GAGTC	6 cut(s)	209, 485, 499, 659, 819, 926
ScrFI	CCNGG	2 cut(s)	208, 278
SduI	GDGCHC	4 cut(s)	13, 372, 501, 744
SfaNI	GCATC	2 cut(s)	177, 435
Sfr274I	CTCGAG	1 cut(s)	563
Sfr303I	CCGCGG	1 cut(s)	538
SgrBI	CCGCGG	1 cut(s)	538
SgrDI	CGTCGACG	1 cut(s)	656
SinI	GGWCC	1 cut(s)	673
SlaI	CTCGAG	1 cut(s)	563
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	3 cut(s)	85, 563, 806
SmoI	CTYRAG	3 cut(s)	85, 563, 806
Sse9I	AATT	2 cut(s)	677, 812
SspMI	CTAG	2 cut(s)	242, 773
SstI	GAGCTC	1 cut(s)	501
StyD4I	CCNGG	2 cut(s)	206, 276
TaaI	ACNGT	2 cut(s)	76, 130
TaiI	ACGT	6 cut(s)	195, 420, 437, 579, 605, 786
TaqI	TCGA	8 cut(s)	359, 366, 429, 513, 564, 645, 657, 936
TasI	AATT	2 cut(s)	677, 812
TfiI	GAWTC	3 cut(s)	156, 257, 858
Tru1I	TTAA	2 cut(s)	32, 86
Tru9I	TTAA	2 cut(s)	32, 86
TseFI	GTSAC	3 cut(s)	124, 193, 404
TseI	GCWGC	4 cut(s)	165, 263, 754, 776
Tsp45I	GTSAC	3 cut(s)	124, 193, 404
TspDTI	ATGAA	1 cut(s)	129
Vha464I	CTTAAG	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	673
XagI	CCTNNNNNAGG	1 cut(s)	793
XapI	RAATTY	1 cut(s)	812
XhoI	CTCGAG	1 cut(s)	563
XmiI	GTMKAC	1 cut(s)	657
XspI	CTAG	2 cut(s)	242, 773
ZraI	GACGTC	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.