Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005662

Physical Location & Seq

Genomic Coordinates Reverse (-)

50383072 .. 50385395

Gene Structure 2324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019331

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGTGGTATGGGTTTGTGTTTTGGGAGTACGATCGGTGGTGGAGATAGTGTTCCCTCAGATTTGGATTGTTGGGATTCGGGGAGGCTTACCGTTCTACGTTGGGTTGGCTTGGGACTGGGATAGCCGGTGCTTGAGGCCTAGTGCTACGCGGAGTTTCTTTGTGCGAGATGGGGTTAACCTTGGCTCTGATGGCGGCAACGGCGGCGTAGGGGGTGGTGATATGTGTTGGGGTGTCTCTTCTACTTTCGGCAGCAGAGGCGGTGGCTGGCCGATGAAGGTGGCGGGGAGGATGGTCACTGGGCTTCTAAGGTTTAGTCCAGTGGCTTTTGGTGGGTCTGGGCTCATTGGCGCTTGGGCCTTGAAGACTGAAAGTATGACCGATAAGCCATCGGAGCCGTCCCTATCGCCGCTGTCGAAGCCCGTCAAGCTCCAAGACTGGGAGTCCTTAATTGACGATTTCCAGCATGGCGGCGCACGCCGCCACCGCTGGACCTCCGCGCACCCAATCATCATCGACCAAGCCCTTTATTATCTCAACAAGCGAGAATTCCCTCTCAAGCTCCAGCTCATCGTCTTCCTTGAAGAATTCTCCAACCCACTCTTCACATCCGACCGGGGACTCCCTCTTTCGGCGACGACGCCCCCGCCCGAGTATCTCTGGCAGAATCCGCTGCCGCTGTCGATCCCGTTGCCTGGCTCCCGGTCTTCACCTTCTCTTCCATCAAGCACCGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

26.67

Weight (kDa)

8.86

Isoelectric Point (pI)

57.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60220
fragaria_vesca	FvH4_7g08860
malus_domestica	MD02G1223200.v1.1 MD07G1091500.v1.1
prunus_persica	Prupe.2G116700_v2.0.a1
pyrus_communis	pycom07g07480 pycom15g32160
rosa_chinensis	RchiOBHm_Chr1g0344271 RchiOBHm_Chr7g0197351
rosa_laevigata	RLG00000003768 RLG00000015102 RLG00000019331 RLG00000025671 RLG00000028912
rosa_multiflora	Rmu_sc0000019.1_g000012 Rmu_sc0000338.1_g000018 Rmu_sc0003703.1_g000004 Rmu_sc0005991.1_g000007 Rmu_sc0016684.1_g000002 Rmu_sc0016685.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309960
rosa_rugosa	Rorug01G0172700
rosa_samantha	Rh1AG188600 Rh1BG155100 Rh1CG174400 Rh2CG262100 Rh3BG248600
rosa_wichuraiana	Rw1G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	151, 500
AclWI	GGATC	1 cut(s)	679
AcoI	YGGCCR	1 cut(s)	269
AcsI	RAATTY	2 cut(s)	548, 587
AcyI	GRCGYC	1 cut(s)	641
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	3 cut(s)	439, 631, 695
AgsI	TTSAA	2 cut(s)	364, 584
AhdI	GACNNNNNGTC	1 cut(s)	442
AjnI	CCWGG	1 cut(s)	694
AjuI	GAANNNNNNNTTGG	2 cut(s)	587, 619
AloI	GAACNNNNNNTCC	2 cut(s)	35, 67
AluBI	AGCT	3 cut(s)	430, 562, 568
AluI	AGCT	3 cut(s)	430, 562, 568
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	1 cut(s)	679
Ama87I	CYCGRG	1 cut(s)	650
AoxI	GGCC	3 cut(s)	137, 269, 357
ApeKI	GCWGC	2 cut(s)	252, 673
ApoI	RAATTY	2 cut(s)	548, 587
AspLEI	GCGC	3 cut(s)	353, 476, 502
AspS9I	GGNCC	2 cut(s)	357, 492
AsuC2I	CCSGG	2 cut(s)	617, 703
AsuHPI	GGTGA	2 cut(s)	230, 702
AvaI	CYCGRG	1 cut(s)	650
AvaII	GGWCC	1 cut(s)	492
BanII	GRGCYC	1 cut(s)	345
BbsI	GAAGAC	3 cut(s)	371, 568, 699
BbvI	GCAGC	2 cut(s)	264, 660
BccI	CCATC	5 cut(s)	164, 185, 286, 397, 730
BceAI	ACGGC	2 cut(s)	217, 382
BcgI	CGANNNNNNTGC	2 cut(s)	673, 707
BciT130I	CCWGG	1 cut(s)	696
BcnI	CCSGG	2 cut(s)	617, 703
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	2 cut(s)	141, 736
BfoI	RGCGCY	1 cut(s)	354
BisI	GCNGC	8 cut(s)	196, 205, 253, 410, 472, 481, 674, 677
BlsI	GCNGC	8 cut(s)	197, 206, 254, 411, 473, 482, 675, 678
Bme1390I	CCNGG	3 cut(s)	617, 696, 703
Bme18I	GGWCC	1 cut(s)	492
BmeRI	GACNNNNNGTC	1 cut(s)	442
BmeT110I	CYCGRG	1 cut(s)	650
BmgT120I	GGNCC	2 cut(s)	357, 492
BmiI	GGNNCC	2 cut(s)	396, 700
BmrFI	CCNGG	3 cut(s)	617, 696, 703
BmrI	ACTGGG	3 cut(s)	127, 309, 448
BmuI	ACTGGG	3 cut(s)	127, 309, 448
BpiI	GAAGAC	3 cut(s)	371, 568, 699
BpmI	CTGGAG	1 cut(s)	548
BpuEI	CTTGAG	2 cut(s)	154, 542
BpuMI	CCSGG	2 cut(s)	617, 703
BsaHI	GRCGYC	1 cut(s)	641
BsaJI	CCNNGG	2 cut(s)	181, 616
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	3 cut(s)	439, 631, 695
Bse118I	RCCGGY	1 cut(s)	126
Bse1I	ACTGG	4 cut(s)	122, 304, 320, 443
BseBI	CCWGG	1 cut(s)	696
BseDI	CCNNGG	2 cut(s)	181, 616
BseGI	GGATG	2 cut(s)	297, 608
BseLI	CCNNNNNNNGG	3 cut(s)	439, 631, 695
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	4 cut(s)	122, 304, 320, 443
BseXI	GCAGC	2 cut(s)	264, 660
Bsh1236I	CGCG	2 cut(s)	151, 500
Bsh1285I	CGRYCG	2 cut(s)	35, 616
BshFI	GGCC	3 cut(s)	139, 271, 359
BsiEI	CGRYCG	2 cut(s)	35, 616
BsiHKCI	CYCGRG	1 cut(s)	650
BsiSI	CCGG	3 cut(s)	127, 616, 703
BslFI	GGGAC	3 cut(s)	128, 385, 633
BslI	CCNNNNNNNGG	3 cut(s)	439, 631, 695
BsmAI	GTCTC	1 cut(s)	241
BsmFI	GGGAC	3 cut(s)	128, 385, 633
BsnI	GGCC	3 cut(s)	139, 271, 359
BsoBI	CYCGRG	1 cut(s)	650
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	32, 684
BspANI	GGCC	3 cut(s)	139, 271, 359
BspCNI	CTCAG	1 cut(s)	70
BspFNI	CGCG	2 cut(s)	151, 500
BspLI	GGNNCC	2 cut(s)	396, 700
BspPI	GGATC	1 cut(s)	679
BsrFI	RCCGGY	1 cut(s)	126
BsrI	ACTGG	4 cut(s)	122, 304, 320, 443
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	181, 616
BssMI	GATC	2 cut(s)	32, 684
BssNI	GRCGYC	1 cut(s)	641
BssT1I	CCWWGG	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	696
Bst4CI	ACNGT	1 cut(s)	93
Bst6I	CTCTTC	3 cut(s)	244, 608, 723
BstACI	GRCGYC	1 cut(s)	641
BstC8I	GCNNGC	2 cut(s)	269, 478
BstDEI	CTNAG	2 cut(s)	57, 308
BstF5I	GGATG	2 cut(s)	297, 608
BstFNI	CGCG	2 cut(s)	151, 500
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	3 cut(s)	353, 476, 502
BstKTI	GATC	2 cut(s)	35, 687
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	2 cut(s)	32, 684
BstMCI	CGRYCG	2 cut(s)	35, 616
BstNI	CCWGG	1 cut(s)	696
BstSCI	CCNGG	3 cut(s)	615, 694, 701
BstUI	CGCG	2 cut(s)	151, 500
BstV1I	GCAGC	2 cut(s)	264, 660
BstV2I	GAAGAC	3 cut(s)	371, 568, 699
BsuRI	GGCC	3 cut(s)	139, 271, 359
BtsCI	GGATG	2 cut(s)	297, 608
BtsIMutI	CAGTG	2 cut(s)	297, 327
Cac8I	GCNNGC	2 cut(s)	269, 478
CfoI	GCGC	3 cut(s)	353, 476, 502
Cfr10I	RCCGGY	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	357, 492
CseI	GACGC	1 cut(s)	649
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	1 cut(s)	467
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	2 cut(s)	57, 308
DpnI	GATC	2 cut(s)	34, 686
DpnII	GATC	2 cut(s)	32, 684
DriI	GACNNNNNGTC	1 cut(s)	442
EaeI	YGGCCR	1 cut(s)	269
Eam1104I	CTCTTC	3 cut(s)	244, 608, 723
Eam1105I	GACNNNNNGTC	1 cut(s)	442
EarI	CTCTTC	3 cut(s)	244, 608, 723
Eco130I	CCWWGG	1 cut(s)	181
Eco147I	AGGCCT	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	650
EcoRI	GAATTC	2 cut(s)	548, 587
EcoRII	CCWGG	1 cut(s)	694
EcoT14I	CCWWGG	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	1 cut(s)	470
FaiI	YATR	4 cut(s)	10, 224, 377, 468
FaqI	GGGAC	3 cut(s)	128, 385, 633
FatI	CATG	1 cut(s)	466
FauI	CCCGC	2 cut(s)	277, 654
Fnu4HI	GCNGC	8 cut(s)	196, 205, 253, 410, 472, 481, 674, 677
FokI	GGATG	2 cut(s)	304, 595
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	8 cut(s)	196, 205, 253, 410, 472, 481, 674, 677
FspBI	CTAG	2 cut(s)	141, 736
GlaI	GCGC	3 cut(s)	352, 475, 501
GluI	GCNGC	8 cut(s)	196, 205, 253, 410, 472, 481, 674, 677
GsuI	CTGGAG	1 cut(s)	548
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	3 cut(s)	139, 271, 359
HapII	CCGG	3 cut(s)	127, 616, 703
HgaI	GACGC	1 cut(s)	649
HhaI	GCGC	3 cut(s)	353, 476, 502
Hin1I	GRCGYC	1 cut(s)	641
Hin1II	CATG	1 cut(s)	470
Hin6I	GCGC	3 cut(s)	351, 474, 500
HinP1I	GCGC	3 cut(s)	351, 474, 500
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	4 cut(s)	76, 443, 621, 667
HpaI	GTTAAC	1 cut(s)	178
HpaII	CCGG	3 cut(s)	127, 616, 703
HphI	GGTGA	2 cut(s)	230, 702
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	4 cut(s)	60, 190, 394, 613
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	2 cut(s)	640, 643
HpyAV	CCTTC	2 cut(s)	271, 723
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4IV	ACGT	1 cut(s)	99
HpyF3I	CTNAG	2 cut(s)	57, 308
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	1 cut(s)	641
Hsp92II	CATG	1 cut(s)	470
HspAI	GCGC	3 cut(s)	351, 474, 500
KspAI	GTTAAC	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	32, 684
LmnI	GCTCC	4 cut(s)	394, 435, 567, 704
Lsp1109I	GCAGC	2 cut(s)	264, 660
MaeI	CTAG	2 cut(s)	141, 736
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	2 cut(s)	34, 686
MboI	GATC	2 cut(s)	32, 684
MboII	GAAGA	7 cut(s)	231, 376, 568, 595, 596, 699, 710
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	3 cut(s)	450, 548, 587
MlyI	GAGTC	2 cut(s)	452, 615
MmeI	TCCRAC	2 cut(s)	618, 636
MnlI	CCTC	8 cut(s)	66, 77, 129, 251, 282, 505, 564, 636
MseI	TTAA	2 cut(s)	177, 449
MspA1I	CMGCKG	4 cut(s)	412, 489, 673, 679
MspI	CCGG	3 cut(s)	127, 616, 703
MspR9I	CCNGG	3 cut(s)	617, 696, 703
MvaI	CCWGG	1 cut(s)	696
MvnI	CGCG	2 cut(s)	151, 500
NciI	CCSGG	2 cut(s)	617, 703
NdeII	GATC	2 cut(s)	32, 684
NlaIII	CATG	1 cut(s)	470
NlaIV	GGNNCC	2 cut(s)	396, 700
NmuCI	GTSAC	1 cut(s)	295
PceI	AGGCCT	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	1 cut(s)	413
PfeI	GAWTC	2 cut(s)	76, 667
PkrI	GCNGC	8 cut(s)	197, 206, 254, 411, 473, 482, 675, 678
Ple19I	CGATCG	1 cut(s)	35
PleI	GAGTC	2 cut(s)	451, 615
PpsI	GAGTC	2 cut(s)	451, 615
Psp6I	CCWGG	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	694
PspN4I	GGNNCC	2 cut(s)	396, 700
PspPI	GGNCC	2 cut(s)	357, 492
PvuI	CGATCG	1 cut(s)	35
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
SaqAI	TTAA	2 cut(s)	177, 449
SatI	GCNGC	8 cut(s)	196, 205, 253, 410, 472, 481, 674, 677
Sau3AI	GATC	2 cut(s)	32, 684
Sau96I	GGNCC	2 cut(s)	357, 492
SchI	GAGTC	2 cut(s)	452, 615
ScrFI	CCNGG	3 cut(s)	617, 696, 703
SduI	GDGCHC	1 cut(s)	345
SetI	ASST	9 cut(s)	102, 183, 282, 314, 432, 497, 564, 570, 715
SinI	GGWCC	1 cut(s)	492
SmlI	CTYRAG	2 cut(s)	133, 557
SmoI	CTYRAG	2 cut(s)	133, 557
Sse9I	AATT	3 cut(s)	450, 548, 587
SseBI	AGGCCT	1 cut(s)	139
SspMI	CTAG	2 cut(s)	141, 736
StuI	AGGCCT	1 cut(s)	139
StyD4I	CCNGG	3 cut(s)	615, 694, 701
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	93
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	3 cut(s)	416, 516, 683
TaqII	GACCGA	1 cut(s)	395
TasI	AATT	3 cut(s)	450, 548, 587
TauI	GCSGC	6 cut(s)	198, 207, 412, 474, 483, 679
TfiI	GAWTC	2 cut(s)	76, 667
Tru1I	TTAA	2 cut(s)	177, 449
Tru9I	TTAA	2 cut(s)	177, 449
TscAI	CASTG	2 cut(s)	304, 327
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	2 cut(s)	252, 673
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	2 cut(s)	304, 327
VpaK11BI	GGWCC	1 cut(s)	492
XapI	RAATTY	2 cut(s)	548, 587
XspI	CTAG	2 cut(s)	141, 736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.