Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000338.1

Orthogroup ID

OG0005662

Physical Location & Seq

Genomic Coordinates Reverse (-)

68456 .. 69100

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000338.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgaccgataagccactggagccgccatcgaagcccgtcacgctccaagactgggagtccttatttgacgatttccagcacggtggcgcacgccgccatcgctggacctctgcacacccaatcatcatcgaccaagccctctcttgtctcaacaagcgagaattccctctcaagctccagctcatcatcttccttgaagaattctccgacctgctcttcacatccgacccggactccctcttccaggagacgaccccccccccccccgcccaagtatctccgaccgaatcagctgcagccgccgatccggtcgcctcgctcccggtcttcgccttcttcgccataaagcaccgccgagcctcctctactgctgtcgtcgccgcctactgcatcgtctgcctcttgaagtttgagcatgacgaccagctccggctactccctctctgctgtcacgccttccacgtatcgtgcatcgacacgtggctccactcccagcagacctgcccgctctgccggtggcctatttccacgttctactccgagctcatgaagatcaggaagaagagagagaagaccttggtggtggtctggaagagaagggggggagaggggggagggtgttttaggaagtggcaaaagagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

24.48

Weight (kDa)

8.58

Isoelectric Point (pI)

62.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60220
fragaria_vesca	FvH4_7g08860
malus_domestica	MD02G1223200.v1.1 MD07G1091500.v1.1
prunus_persica	Prupe.2G116700_v2.0.a1
pyrus_communis	pycom07g07480 pycom15g32160
rosa_chinensis	RchiOBHm_Chr1g0344271 RchiOBHm_Chr7g0197351
rosa_laevigata	RLG00000003768 RLG00000015102 RLG00000019331 RLG00000025671 RLG00000028912
rosa_multiflora	Rmu_sc0000019.1_g000012 Rmu_sc0000338.1_g000018 Rmu_sc0003703.1_g000004 Rmu_sc0005991.1_g000007 Rmu_sc0016684.1_g000002 Rmu_sc0016685.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309960
rosa_rugosa	Rorug01G0172700
rosa_samantha	Rh1AG188600 Rh1BG155100 Rh1CG174400 Rh2CG262100 Rh3BG248600
rosa_wichuraiana	Rw1G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	219, 509
AccBSI	CCGCTC	1 cut(s)	508
AciI	CCGC	7 cut(s)	23, 94, 267, 300, 352, 381, 506
AclWI	GGATC	1 cut(s)	299
AcsI	RAATTY	2 cut(s)	161, 200
AcvI	CACGTG	1 cut(s)	480
AfiI	CCNNNNNNNGG	2 cut(s)	52, 244
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	2 cut(s)	197, 406
AhdI	GACNNNNNGTC	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	5 cut(s)	175, 181, 293, 427, 544
AluI	AGCT	5 cut(s)	175, 181, 293, 427, 544
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	2 cut(s)	152, 242
AlwI	GGATC	1 cut(s)	299
AoxI	GGCC	1 cut(s)	518
ApeKI	GCWGC	2 cut(s)	293, 296
ApoI	RAATTY	2 cut(s)	161, 200
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	105
AsuC2I	CCSGG	2 cut(s)	230, 323
AvaII	GGWCC	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	546
BbrPI	CACGTG	1 cut(s)	480
BbsI	GAAGAC	2 cut(s)	319, 578
Bbv12I	GWGCWC	1 cut(s)	546
BbvI	GCAGC	2 cut(s)	280, 308
BccI	CCATC	2 cut(s)	34, 105
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BciT130I	CCWGG	1 cut(s)	245
BcnI	CCSGG	2 cut(s)	230, 323
BcoDI	GTCTC	2 cut(s)	152, 242
BfmI	CTRYAG	1 cut(s)	294
BfuAI	ACCTGC	2 cut(s)	219, 509
BisI	GCNGC	6 cut(s)	23, 94, 294, 297, 300, 381
BlsI	GCNGC	6 cut(s)	24, 95, 295, 298, 301, 382
Bme1390I	CCNGG	3 cut(s)	230, 245, 323
Bme18I	GGWCC	1 cut(s)	105
BmeRI	GACNNNNNGTC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	2 cut(s)	21, 485
BmrFI	CCNGG	3 cut(s)	230, 245, 323
BmrI	ACTGGG	1 cut(s)	61
BmsI	GCATC	2 cut(s)	399, 480
BmuI	ACTGGG	1 cut(s)	61
BpiI	GAAGAC	2 cut(s)	319, 578
BpmI	CTGGAG	2 cut(s)	38, 161
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	2 cut(s)	230, 323
BsaAI	YACGTR	2 cut(s)	463, 480
BsaJI	CCNNGG	1 cut(s)	576
BsaWI	WCCGGW	1 cut(s)	307
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 244
Bse118I	RCCGGY	1 cut(s)	513
Bse1I	ACTGG	2 cut(s)	21, 56
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	576
BseGI	GGATG	1 cut(s)	221
BseLI	CCNNNNNNNGG	2 cut(s)	52, 244
BseNI	ACTGG	2 cut(s)	21, 56
BseRI	GAGGAG	1 cut(s)	352
BseXI	GCAGC	2 cut(s)	280, 308
BseYI	CCCAGC	1 cut(s)	492
BsgI	GTGCAG	1 cut(s)	96
Bsh1285I	CGRYCG	2 cut(s)	285, 312
BshFI	GGCC	1 cut(s)	520
BsiEI	CGRYCG	2 cut(s)	285, 312
BsiHKAI	GWGCWC	1 cut(s)	546
BsiSI	CCGG	5 cut(s)	230, 308, 323, 430, 514
BslI	CCNNNNNNNGG	2 cut(s)	52, 244
BsmAI	GTCTC	2 cut(s)	152, 242
BsmBI	CGTCTC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	520
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp143I	GATC	2 cut(s)	304, 552
BspACI	CCGC	7 cut(s)	23, 94, 267, 300, 352, 381, 506
BspANI	GGCC	1 cut(s)	520
BspHI	TCATGA	1 cut(s)	546
BspLI	GGNNCC	2 cut(s)	21, 485
BspMAI	CTGCAG	1 cut(s)	298
BspMI	ACCTGC	2 cut(s)	219, 509
BspPI	GGATC	1 cut(s)	299
BspQI	GCTCTTC	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	508
BsrFI	RCCGGY	1 cut(s)	513
BsrI	ACTGG	2 cut(s)	21, 56
BssAI	RCCGGY	1 cut(s)	513
BssECI	CCNNGG	1 cut(s)	576
BssMI	GATC	2 cut(s)	304, 552
BssT1I	CCWWGG	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	83
Bst6I	CTCTTC	4 cut(s)	221, 245, 557, 587
BstAPI	GCANNNNNTGC	1 cut(s)	396
BstBAI	YACGTR	2 cut(s)	463, 480
BstC8I	GCNNGC	2 cut(s)	91, 506
BstENI	CCTNNNNNAGG	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	2 cut(s)	307, 555
BstMAI	GTCTC	2 cut(s)	152, 242
BstMBI	GATC	2 cut(s)	304, 552
BstMCI	CGRYCG	2 cut(s)	285, 312
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	3 cut(s)	228, 243, 321
BstSFI	CTRYAG	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	280, 308
BstV2I	GAAGAC	2 cut(s)	319, 578
BstXI	CCANNNNNNTGG	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	520
BtgZI	GCGATG	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	221
BtsIMutI	CAGTG	1 cut(s)	14
BveI	ACCTGC	2 cut(s)	219, 509
Cac8I	GCNNGC	2 cut(s)	91, 506
CciI	TCATGA	1 cut(s)	546
CfoI	GCGC	1 cut(s)	89
Cfr10I	RCCGGY	1 cut(s)	513
Cfr13I	GGNCC	1 cut(s)	105
CviAII	CATG	2 cut(s)	416, 547
DpnI	GATC	2 cut(s)	306, 554
DpnII	GATC	2 cut(s)	304, 552
DriI	GACNNNNNGTC	1 cut(s)	55
Eam1104I	CTCTTC	4 cut(s)	221, 245, 557, 587
Eam1105I	GACNNNNNGTC	1 cut(s)	55
EarI	CTCTTC	4 cut(s)	221, 245, 557, 587
Ecl136II	GAGCTC	1 cut(s)	544
Eco130I	CCWWGG	1 cut(s)	576
Eco24I	GRGCYC	1 cut(s)	546
Eco47I	GGWCC	1 cut(s)	105
Eco53kI	GAGCTC	1 cut(s)	544
Eco72I	CACGTG	1 cut(s)	480
EcoICRI	GAGCTC	1 cut(s)	544
EcoNI	CCTNNNNNAGG	1 cut(s)	242
EcoRI	GAATTC	2 cut(s)	161, 200
EcoRII	CCWGG	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	576
EcoT38I	GRGCYC	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	576
Esp3I	CGTCTC	1 cut(s)	242
FaeI	CATG	2 cut(s)	419, 550
FaiI	YATR	3 cut(s)	344, 417, 548
FatI	CATG	2 cut(s)	415, 546
FauI	CCCGC	2 cut(s)	274, 513
Fnu4HI	GCNGC	6 cut(s)	23, 94, 294, 297, 300, 381
FokI	GGATG	1 cut(s)	208
FriOI	GRGCYC	1 cut(s)	546
Fsp4HI	GCNGC	6 cut(s)	23, 94, 294, 297, 300, 381
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	6 cut(s)	23, 94, 294, 297, 300, 381
GsaI	CCCAGC	1 cut(s)	496
GsuI	CTGGAG	2 cut(s)	38, 161
HaeIII	GGCC	1 cut(s)	520
HapII	CCGG	5 cut(s)	230, 308, 323, 430, 514
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	2 cut(s)	419, 550
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HinfI	GANTC	3 cut(s)	56, 233, 287
HpaII	CCGG	5 cut(s)	230, 308, 323, 430, 514
Hpy188I	TCNGA	4 cut(s)	208, 226, 282, 541
Hpy188III	TCNNGA	4 cut(s)	403, 547, 556, 589
Hpy99I	CGWCG	1 cut(s)	380
HpyAV	CCTTC	3 cut(s)	343, 466, 591
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4IV	ACGT	3 cut(s)	462, 479, 530
HpyCH4V	TGCA	4 cut(s)	113, 296, 390, 471
HpySE526I	ACGT	3 cut(s)	462, 479, 530
Hsp92II	CATG	2 cut(s)	419, 550
HspAI	GCGC	1 cut(s)	87
Kzo9I	GATC	2 cut(s)	304, 552
LguI	GCTCTTC	1 cut(s)	221
LmnI	GCTCC	6 cut(s)	19, 48, 180, 324, 432, 489
Lsp1109I	GCAGC	2 cut(s)	280, 308
LweI	GCATC	2 cut(s)	399, 480
MaeII	ACGT	3 cut(s)	462, 479, 530
MaeIII	GTNAC	2 cut(s)	37, 449
MalI	GATC	2 cut(s)	306, 554
MbiI	CCGCTC	1 cut(s)	508
MboI	GATC	2 cut(s)	304, 552
MhlI	GDGCHC	1 cut(s)	546
MluCI	AATT	2 cut(s)	161, 200
MlyI	GAGTC	2 cut(s)	65, 227
MmeI	TCCRAC	3 cut(s)	231, 249, 305
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	5 cut(s)	230, 308, 323, 430, 514
MspR9I	CCNGG	3 cut(s)	230, 245, 323
MvaI	CCWGG	1 cut(s)	245
NciI	CCSGG	2 cut(s)	230, 323
NdeII	GATC	2 cut(s)	304, 552
NlaIII	CATG	2 cut(s)	419, 550
NlaIV	GGNNCC	2 cut(s)	21, 485
NmeAIII	GCCGAG	1 cut(s)	380
NmuCI	GTSAC	2 cut(s)	37, 449
PagI	TCATGA	1 cut(s)	546
PciSI	GCTCTTC	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PfeI	GAWTC	1 cut(s)	287
PfoI	TCCNGGA	1 cut(s)	243
PkrI	GCNGC	6 cut(s)	24, 95, 295, 298, 301, 382
PleI	GAGTC	2 cut(s)	64, 227
PmaCI	CACGTG	1 cut(s)	480
PmlI	CACGTG	1 cut(s)	480
PpsI	GAGTC	2 cut(s)	64, 227
Ppu21I	YACGTR	2 cut(s)	463, 480
Psp124BI	GAGCTC	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	243
PspCI	CACGTG	1 cut(s)	480
PspFI	CCCAGC	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	21, 485
PspPI	GGNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	298
PvuII	CAGCTG	1 cut(s)	293
SacI	GAGCTC	1 cut(s)	546
SapI	GCTCTTC	1 cut(s)	221
SatI	GCNGC	6 cut(s)	23, 94, 294, 297, 300, 381
Sau3AI	GATC	2 cut(s)	304, 552
Sau96I	GGNCC	1 cut(s)	105
SchI	GAGTC	2 cut(s)	65, 227
ScrFI	CCNGG	3 cut(s)	230, 245, 323
SduI	GDGCHC	1 cut(s)	546
SfaNI	GCATC	2 cut(s)	399, 480
SfcI	CTRYAG	1 cut(s)	294
SinI	GGWCC	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	2 cut(s)	161, 200
SsiI	CCGC	7 cut(s)	23, 94, 267, 300, 352, 381, 506
SstI	GAGCTC	1 cut(s)	546
StyD4I	CCNGG	3 cut(s)	228, 243, 321
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	1 cut(s)	83
TaiI	ACGT	3 cut(s)	465, 482, 533
TaqI	TCGA	3 cut(s)	29, 129, 474
TaqII	GACCGA	2 cut(s)	20, 299
TasI	AATT	2 cut(s)	161, 200
TauI	GCSGC	4 cut(s)	25, 96, 302, 383
TfiI	GAWTC	1 cut(s)	287
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	2 cut(s)	37, 449
TseI	GCWGC	2 cut(s)	293, 296
Tsp45I	GTSAC	2 cut(s)	37, 449
TspDTI	ATGAA	1 cut(s)	563
TspRI	CASTG	1 cut(s)	21
VpaK11BI	GGWCC	1 cut(s)	105
XagI	CCTNNNNNAGG	1 cut(s)	242
XapI	RAATTY	2 cut(s)	161, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.