Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005662

Physical Location & Seq

Genomic Coordinates Forward (+)

28137727 .. 28143322

Gene Structure 5596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG262100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCCCTGATCGAGATTGGCAACCTCAGCCGCCGCCAAACAACTACGACGTCCAACTCCAGCCTGCGTCGCTCCTACTCCAATGGATCGTTCGACTTCCTCGTTGACGACGACTCCGAGGTCGGATTGTCCAATGCCAGAAACCGCTGGTCTGATCGGAAAGAAGAGGTGATTGTTGTTCTCGGCGAGCTCCCACCGCCGCTGCCGTCGGAGGCCAGTCTAGGCGCTAACGTGGCCTCGGGAAGGAGCTGGCTTAAAGAATTCGTGCATAGACTCTCCAGCTCTTCTCTACGAAGCTCCGACAGATTCTTTACCGGATCTCGAATTCACTATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

112

Amino Acids

12.45

Weight (kDa)

8.23

Isoelectric Point (pI)

78.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60220
fragaria_vesca	FvH4_7g08860
malus_domestica	MD02G1223200.v1.1 MD07G1091500.v1.1
prunus_persica	Prupe.2G116700_v2.0.a1
pyrus_communis	pycom07g07480 pycom15g32160
rosa_chinensis	RchiOBHm_Chr1g0344271 RchiOBHm_Chr7g0197351
rosa_laevigata	RLG00000003768 RLG00000015102 RLG00000019331 RLG00000025671 RLG00000028912
rosa_multiflora	Rmu_sc0000019.1_g000012 Rmu_sc0000338.1_g000018 Rmu_sc0003703.1_g000004 Rmu_sc0005991.1_g000007 Rmu_sc0016684.1_g000002 Rmu_sc0016685.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309960
rosa_rugosa	Rorug01G0172700
rosa_samantha	Rh1AG188600 Rh1BG155100 Rh1CG174400 Rh2CG262100 Rh3BG248600
rosa_wichuraiana	Rw1G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AatII	GACGTC	1 cut(s)	53
AciI	CCGC	5 cut(s)	31, 34, 145, 197, 200
AclWI	GGATC	2 cut(s)	94, 325
AcsI	RAATTY	2 cut(s)	260, 324
AcyI	GRCGYC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	243
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	4 cut(s)	190, 249, 282, 297
AluI	AGCT	4 cut(s)	190, 249, 282, 297
Alw21I	GWGCWC	1 cut(s)	192
AlwI	GGATC	2 cut(s)	94, 325
Ama87I	CYCGRG	1 cut(s)	238
AoxI	GGCC	3 cut(s)	3, 213, 234
ApeKI	GCWGC	1 cut(s)	202
ApoI	RAATTY	2 cut(s)	260, 324
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	189
BceAI	ACGGC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	221
BfoI	RGCGCY	1 cut(s)	228
BisI	GCNGC	4 cut(s)	31, 34, 200, 203
BlsI	GCNGC	4 cut(s)	32, 35, 201, 204
BmeT110I	CYCGRG	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	4
BpmI	CTGGAG	2 cut(s)	43, 262
Bpu10I	CCTNAGC	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	117, 237
BsaWI	WCCGGW	1 cut(s)	314
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	117, 237
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	189
BshFI	GGCC	3 cut(s)	5, 215, 236
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	243
BsnI	GGCC	3 cut(s)	5, 215, 236
BsoBI	CYCGRG	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	4 cut(s)	9, 86, 154, 317
BspACI	CCGC	5 cut(s)	31, 34, 145, 197, 200
BspANI	GGCC	3 cut(s)	5, 215, 236
BspCNI	CTCAG	1 cut(s)	39
BspPI	GGATC	2 cut(s)	94, 325
BspQI	GCTCTTC	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	2 cut(s)	117, 237
BssMI	GATC	4 cut(s)	9, 86, 154, 317
BssNI	GRCGYC	1 cut(s)	50
Bst6I	CTCTTC	2 cut(s)	159, 289
BstACI	GRCGYC	1 cut(s)	50
BstC8I	GCNNGC	3 cut(s)	65, 188, 251
BstDEI	CTNAG	1 cut(s)	26
BstENI	CCTNNNNNAGG	1 cut(s)	241
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	4 cut(s)	12, 89, 157, 320
BstMBI	GATC	4 cut(s)	9, 86, 154, 317
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 69, 196, 233
BstV1I	GCAGC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
BsuRI	GGCC	3 cut(s)	5, 215, 236
Cac8I	GCNNGC	3 cut(s)	65, 188, 251
CfoI	GCGC	1 cut(s)	227
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	56
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	4 cut(s)	11, 88, 156, 319
DpnII	GATC	4 cut(s)	9, 86, 154, 317
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
Eam1104I	CTCTTC	2 cut(s)	159, 289
EarI	CTCTTC	2 cut(s)	159, 289
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	192
Eco53kI	GAGCTC	1 cut(s)	190
Eco88I	CYCGRG	1 cut(s)	238
EcoICRI	GAGCTC	1 cut(s)	190
EcoNI	CCTNNNNNAGG	1 cut(s)	241
EcoRI	GAATTC	2 cut(s)	260, 324
EcoT22I	ATGCAT	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	192
FaiI	YATR	3 cut(s)	270, 333, 337
Fnu4HI	GCNGC	4 cut(s)	31, 34, 200, 203
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	4 cut(s)	31, 34, 200, 203
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	4 cut(s)	31, 34, 200, 203
GsuI	CTGGAG	2 cut(s)	43, 262
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	3 cut(s)	5, 215, 236
HapII	CCGG	1 cut(s)	315
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	1 cut(s)	50
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	3 cut(s)	113, 273, 306
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	6 cut(s)	118, 125, 154, 159, 211, 301
Hpy188III	TCNNGA	3 cut(s)	13, 240, 321
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	4 cut(s)	52, 72, 113, 211
HpyAV	CCTTC	1 cut(s)	237
HpyCH4IV	ACGT	2 cut(s)	50, 231
HpyCH4V	TGCA	2 cut(s)	268, 335
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 69, 196, 233
HpyF3I	CTNAG	1 cut(s)	26
HpySE526I	ACGT	2 cut(s)	50, 231
Hsp92I	GRCGYC	1 cut(s)	50
HspAI	GCGC	1 cut(s)	225
Kzo9I	GATC	4 cut(s)	9, 86, 154, 317
LguI	GCTCTTC	1 cut(s)	289
LmnI	GCTCC	4 cut(s)	77, 195, 246, 302
LpnPI	CCDG	9 cut(s)	20, 73, 77, 133, 151, 229, 235, 292, 328
Lsp1109I	GCAGC	1 cut(s)	189
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	2 cut(s)	50, 231
MalI	GATC	4 cut(s)	11, 88, 156, 319
MboI	GATC	4 cut(s)	9, 86, 154, 317
MboII	GAAGA	2 cut(s)	176, 276
MflI	RGATCY	1 cut(s)	317
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	2 cut(s)	260, 324
MlyI	GAGTC	2 cut(s)	107, 267
MmeI	TCCRAC	4 cut(s)	78, 103, 189, 324
MnlI	CCTC	6 cut(s)	35, 110, 112, 160, 205, 247
Mph1103I	ATGCAT	1 cut(s)	337
MseI	TTAA	1 cut(s)	255
MspA1I	CMGCKG	2 cut(s)	147, 202
MspI	CCGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	4 cut(s)	27, 69, 196, 233
NdeII	GATC	4 cut(s)	9, 86, 154, 317
NmeAIII	GCCGAG	1 cut(s)	162
NsiI	ATGCAT	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	3 cut(s)	99, 108, 114
PfeI	GAWTC	1 cut(s)	306
PkrI	GCNGC	4 cut(s)	32, 35, 201, 204
PleI	GAGTC	2 cut(s)	107, 267
PpsI	GAGTC	2 cut(s)	107, 267
Psp124BI	GAGCTC	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	317
SacI	GAGCTC	1 cut(s)	192
SapI	GCTCTTC	1 cut(s)	289
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	4 cut(s)	31, 34, 200, 203
Sau3AI	GATC	4 cut(s)	9, 86, 154, 317
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	107, 267
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	9 cut(s)	27, 53, 123, 171, 192, 234, 251, 284, 299
Sse9I	AATT	2 cut(s)	260, 324
SsiI	CCGC	5 cut(s)	31, 34, 145, 197, 200
SspMI	CTAG	1 cut(s)	221
SstI	GAGCTC	1 cut(s)	192
TaiI	ACGT	2 cut(s)	53, 234
TaqI	TCGA	3 cut(s)	12, 93, 322
TasI	AATT	2 cut(s)	260, 324
TauI	GCSGC	3 cut(s)	33, 36, 202
TfiI	GAWTC	1 cut(s)	306
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TseI	GCWGC	1 cut(s)	202
XagI	CCTNNNNNAGG	1 cut(s)	241
XapI	RAATTY	2 cut(s)	260, 324
XspI	CTAG	1 cut(s)	221
ZraI	GACGTC	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.