Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005662

Physical Location & Seq

Genomic Coordinates Reverse (-)

31063698 .. 31064132

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g32160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCATTTGAAAGATAATAGTTTACCCTATTTAAAAATTAAAAAAATAAATAAAACCTTAAAACCCATCTCCTCCAACCCACCTTCTCCCTCTCCTCCACTCTCTTCACCTACCCTCCCATCATCATTGTCATCCTCACAGCCACACTCGTGGCCTCAATCTGCCTCTGTCTCATCCTCCGCCACCACAACCGTCAATGCATCCGTCGCCTTGTGCCCTCCCTCGTCGTCTCATCATCCGATTCTCGCCGTCAATCTGGTGACCTTGCCCACCCTCCCTCTCTTCACCTTCTCCTCCATCACTCGCCGATCATCCACCACCATATCCGCCGACAGCGTTGTTTGCCTGTCGAAATTCGAGCCGAGTGATAAGCTCCGTCTCCTCTCGCTCTGCTGCCACGCCTTCCACACCATCTGCATCGACACGTGGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

145

Amino Acids

15.43

Weight (kDa)

9.33

Isoelectric Point (pI)

72.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	113 - 144	6.1e-06	Ring finger domain
zf-RING_11	PF17123	114 - 140	4.6e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60220
fragaria_vesca	FvH4_7g08860
malus_domestica	MD02G1223200.v1.1 MD07G1091500.v1.1
prunus_persica	Prupe.2G116700_v2.0.a1
pyrus_communis	pycom07g07480 pycom15g32160
rosa_chinensis	RchiOBHm_Chr1g0344271 RchiOBHm_Chr7g0197351
rosa_laevigata	RLG00000003768 RLG00000015102 RLG00000019331 RLG00000025671 RLG00000028912
rosa_multiflora	Rmu_sc0000019.1_g000012 Rmu_sc0000338.1_g000018 Rmu_sc0003703.1_g000004 Rmu_sc0005991.1_g000007 Rmu_sc0016684.1_g000002 Rmu_sc0016685.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309960
rosa_rugosa	Rorug01G0172700
rosa_samantha	Rh1AG188600 Rh1BG155100 Rh1CG174400 Rh2CG262100 Rh3BG248600
rosa_wichuraiana	Rw1G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	180, 327
AcsI	RAATTY	1 cut(s)	353
AcvI	CACGTG	1 cut(s)	426
AflIII	ACRYGT	1 cut(s)	423
AgsI	TTSAA	1 cut(s)	10
AleI	CACNNNNGTG	1 cut(s)	148
AluBI	AGCT	1 cut(s)	373
AluI	AGCT	1 cut(s)	373
Alw26I	GTCTC	3 cut(s)	175, 234, 383
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	1 cut(s)	393
ApoI	RAATTY	1 cut(s)	353
AsuHPI	GGTGA	3 cut(s)	99, 271, 277
BaeGI	GKGCMC	1 cut(s)	218
BauI	CACGAG	1 cut(s)	148
BbrPI	CACGTG	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	380
BccI	CCATC	4 cut(s)	74, 127, 305, 419
BceAI	ACGGC	1 cut(s)	233
BcoDI	GTCTC	3 cut(s)	175, 234, 383
BfaI	CTAG	1 cut(s)	433
BisI	GCNGC	1 cut(s)	394
BlsI	GCNGC	1 cut(s)	395
BmsI	GCATC	2 cut(s)	209, 426
BsaAI	YACGTR	1 cut(s)	426
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
BseGI	GGATG	5 cut(s)	131, 173, 200, 235, 311
BseRI	GAGGAG	4 cut(s)	61, 84, 283, 371
BseSI	GKGCMC	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	380
BshFI	GGCC	1 cut(s)	154
BsmAI	GTCTC	3 cut(s)	175, 234, 383
BsmBI	CGTCTC	2 cut(s)	234, 383
BsnI	GGCC	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp143I	GATC	1 cut(s)	308
BspACI	CCGC	2 cut(s)	180, 327
BspANI	GGCC	1 cut(s)	154
BssMI	GATC	1 cut(s)	308
BssSI	CACGAG	1 cut(s)	148
Bst2BI	CACGAG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	2 cut(s)	109, 287
BstBAI	YACGTR	1 cut(s)	426
BstEII	GGTNACC	1 cut(s)	259
BstF5I	GGATG	5 cut(s)	131, 173, 200, 235, 311
BstKTI	GATC	1 cut(s)	311
BstMAI	GTCTC	3 cut(s)	175, 234, 383
BstMBI	GATC	1 cut(s)	308
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 342
BstPI	GGTNACC	1 cut(s)	259
BstSLI	GKGCMC	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	380
BstXI	CCANNNNNNTGG	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	154
BtsCI	GGATG	5 cut(s)	131, 173, 200, 235, 311
CviJI	RGCY	5 cut(s)	142, 154, 361, 373, 430
CviKI_1	RGCY	5 cut(s)	142, 154, 361, 373, 430
DpnI	GATC	1 cut(s)	310
DpnII	GATC	1 cut(s)	308
DraI	TTTAAA	1 cut(s)	33
Eam1104I	CTCTTC	2 cut(s)	109, 287
EarI	CTCTTC	2 cut(s)	109, 287
EciI	GGCGGA	2 cut(s)	169, 316
Eco72I	CACGTG	1 cut(s)	426
Eco91I	GGTNACC	1 cut(s)	259
EcoO65I	GGTNACC	1 cut(s)	259
EcoT22I	ATGCAT	2 cut(s)	6, 202
Esp3I	CGTCTC	2 cut(s)	234, 383
FaiI	YATR	1 cut(s)	323
Fnu4HI	GCNGC	1 cut(s)	394
FokI	GGATG	5 cut(s)	118, 160, 187, 222, 298
Fsp4HI	GCNGC	1 cut(s)	394
FspBI	CTAG	1 cut(s)	433
GluI	GCNGC	1 cut(s)	394
HaeIII	GGCC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	241
HphI	GGTGA	3 cut(s)	99, 271, 277
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	1 cut(s)	240
Hpy8I	GTNNAC	1 cut(s)	23
Hpy99I	CGWCG	2 cut(s)	209, 229
HpyAV	CCTTC	3 cut(s)	93, 298, 412
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	425
HpyCH4V	TGCA	3 cut(s)	4, 200, 417
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 342
HpySE526I	ACGT	1 cut(s)	425
Kzo9I	GATC	1 cut(s)	308
LmnI	GCTCC	1 cut(s)	378
LpnPI	CCDG	2 cut(s)	242, 359
Lsp1109I	GCAGC	1 cut(s)	380
LweI	GCATC	2 cut(s)	209, 426
MaeI	CTAG	1 cut(s)	433
MaeII	ACGT	1 cut(s)	425
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	1 cut(s)	310
MboI	GATC	1 cut(s)	308
MboII	GAAGA	2 cut(s)	96, 274
MhlI	GDGCHC	1 cut(s)	218
MluCI	AATT	2 cut(s)	36, 353
MmeI	TCCRAC	1 cut(s)	99
Mph1103I	ATGCAT	2 cut(s)	6, 202
MseI	TTAA	3 cut(s)	32, 39, 59
MslI	CAYNNNNRTG	1 cut(s)	148
MwoI	GCNNNNNNNGC	2 cut(s)	206, 342
NdeII	GATC	1 cut(s)	308
NmeAIII	GCCGAG	1 cut(s)	387
NmuCI	GTSAC	1 cut(s)	259
NsiI	ATGCAT	2 cut(s)	6, 202
OliI	CACNNNNGTG	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	395
PmaCI	CACGTG	1 cut(s)	426
PmlI	CACGTG	1 cut(s)	426
Ppu21I	YACGTR	1 cut(s)	426
PspCI	CACGTG	1 cut(s)	426
PspEI	GGTNACC	1 cut(s)	259
RseI	CAYNNNNRTG	1 cut(s)	148
SaqAI	TTAA	3 cut(s)	32, 39, 59
SatI	GCNGC	1 cut(s)	394
Sau3AI	GATC	1 cut(s)	308
SduI	GDGCHC	1 cut(s)	218
SetI	ASST	7 cut(s)	59, 85, 112, 266, 290, 375, 428
SfaNI	GCATC	2 cut(s)	209, 426
SmiMI	CAYNNNNRTG	1 cut(s)	148
Sse9I	AATT	2 cut(s)	36, 353
SsiI	CCGC	2 cut(s)	180, 327
SspMI	CTAG	1 cut(s)	433
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	428
TaqI	TCGA	3 cut(s)	350, 357, 420
TasI	AATT	2 cut(s)	36, 353
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	3 cut(s)	32, 39, 59
Tru9I	TTAA	3 cut(s)	32, 39, 59
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	393
Tsp45I	GTSAC	1 cut(s)	259
TspGWI	ACGGA	2 cut(s)	193, 365
XapI	RAATTY	1 cut(s)	353
XspI	CTAG	1 cut(s)	433
Zsp2I	ATGCAT	2 cut(s)	6, 202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.