Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0005662

Physical Location & Seq

Genomic Coordinates Reverse (-)

23666279 .. 23666882

Gene Structure 604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG248600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGCCCCCGCCCGAGTCTCCAGCCGCGGAGTATCTCCGGCTGAATCCGCCACCACCATCGCCGCTGATCGAGATTGGCAACCTCAGCCGCCGCCAAACAACTACGAGGTCCAACTCCAGCCCGCGCCACTCCTACTCCATTGGATCGTTCGACTACCTCGTTGACGACGACTCCGAGGTCGGATTGTCCAATGCTAGAAACCGCTGGTCTGATCGGAAAGAAGAGGTGATTGTTGTTCTCGGCGAGCTCCCGCCGCCGCTGCCGTCGGAGGCCAGTCTAGGCGCTAACGTGGCCTTGGGAAGGAGCTGGCTTAAAGAATTCGTGCATAGACTCTCCAGCTCTTCTCTACGAAGCTCCGGCAGATTCTTTACCGGTAGTAGCCGTCAGAGCAAGATTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

133

Amino Acids

14.61

Weight (kDa)

9.29

Isoelectric Point (pI)

90.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60220
fragaria_vesca	FvH4_7g08860
malus_domestica	MD02G1223200.v1.1 MD07G1091500.v1.1
prunus_persica	Prupe.2G116700_v2.0.a1
pyrus_communis	pycom07g07480 pycom15g32160
rosa_chinensis	RchiOBHm_Chr1g0344271 RchiOBHm_Chr7g0197351
rosa_laevigata	RLG00000003768 RLG00000015102 RLG00000019331 RLG00000025671 RLG00000028912
rosa_multiflora	Rmu_sc0000019.1_g000012 Rmu_sc0000338.1_g000018 Rmu_sc0003703.1_g000004 Rmu_sc0005991.1_g000007 Rmu_sc0016684.1_g000002 Rmu_sc0016685.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309960
rosa_rugosa	Rorug01G0172700
rosa_samantha	Rh1AG188600 Rh1BG155100 Rh1CG174400 Rh2CG262100 Rh3BG248600
rosa_wichuraiana	Rw1G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	176
AccII	CGCG	2 cut(s)	26, 124
AclWI	GGATC	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	300
AgeI	ACCGGT	1 cut(s)	371
AluBI	AGCT	4 cut(s)	247, 306, 339, 354
AluI	AGCT	4 cut(s)	247, 306, 339, 354
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	1 cut(s)	151
Ama87I	CYCGRG	1 cut(s)	11
AoxI	GGCC	2 cut(s)	270, 291
ApeKI	GCWGC	1 cut(s)	259
ApoI	RAATTY	1 cut(s)	317
AsiGI	ACCGGT	1 cut(s)	371
AspLEI	GCGC	2 cut(s)	126, 284
AspS9I	GGNCC	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	238
AvaI	CYCGRG	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	249
BbvCI	CCTCAGC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	246
BccI	CCATC	1 cut(s)	64
BceAI	ACGGC	2 cut(s)	247, 366
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	2 cut(s)	195, 278
BfoI	RGCGCY	1 cut(s)	285
BisI	GCNGC	7 cut(s)	24, 62, 88, 91, 254, 257, 260
BlsI	GCNGC	7 cut(s)	25, 63, 89, 92, 255, 258, 261
Bme18I	GGWCC	1 cut(s)	108
BmeT110I	CYCGRG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	108
BpmI	CTGGAG	2 cut(s)	100, 319
Bpu10I	CCTNAGC	1 cut(s)	83
BsaJI	CCNNGG	3 cut(s)	24, 174, 294
BsaWI	WCCGGW	1 cut(s)	371
BsaXI	ACNNNNNCTCC	4 cut(s)	119, 149, 155, 185
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse118I	RCCGGY	1 cut(s)	371
Bse1I	ACTGG	1 cut(s)	273
BseDI	CCNNGG	3 cut(s)	24, 174, 294
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	97
BseNI	ACTGG	1 cut(s)	273
BseXI	GCAGC	1 cut(s)	246
Bsh1236I	CGCG	2 cut(s)	26, 124
BshFI	GGCC	2 cut(s)	272, 293
BshTI	ACCGGT	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	3 cut(s)	37, 357, 372
BslI	CCNNNNNNNGG	1 cut(s)	300
BsmAI	GTCTC	1 cut(s)	21
BsnI	GGCC	2 cut(s)	272, 293
BsoBI	CYCGRG	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	3 cut(s)	66, 143, 211
BspANI	GGCC	2 cut(s)	272, 293
BspCNI	CTCAG	1 cut(s)	96
BspFNI	CGCG	2 cut(s)	26, 124
BspPI	GGATC	1 cut(s)	151
BspQI	GCTCTTC	1 cut(s)	346
BsrFI	RCCGGY	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	273
BssAI	RCCGGY	1 cut(s)	371
BssECI	CCNNGG	3 cut(s)	24, 174, 294
BssMI	GATC	3 cut(s)	66, 143, 211
BssT1I	CCWWGG	1 cut(s)	294
Bst6I	CTCTTC	2 cut(s)	216, 346
BstC8I	GCNNGC	3 cut(s)	122, 245, 308
BstDEI	CTNAG	1 cut(s)	83
BstDSI	CCRYGG	1 cut(s)	24
BstENI	CCTNNNNNAGG	1 cut(s)	298
BstFNI	CGCG	2 cut(s)	26, 124
BstH2I	RGCGCY	1 cut(s)	285
BstHHI	GCGC	2 cut(s)	126, 284
BstKTI	GATC	3 cut(s)	69, 146, 214
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	3 cut(s)	66, 143, 211
BstMWI	GCNNNNNNNGC	7 cut(s)	46, 84, 253, 259, 290, 387, 396
BstUI	CGCG	2 cut(s)	26, 124
BstV1I	GCAGC	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	272, 293
BtgI	CCRYGG	1 cut(s)	24
BtgZI	GCGATG	1 cut(s)	42
Cac8I	GCNNGC	3 cut(s)	122, 245, 308
CfoI	GCGC	2 cut(s)	126, 284
Cfr10I	RCCGGY	1 cut(s)	371
Cfr13I	GGNCC	1 cut(s)	108
Cfr42I	CCGCGG	1 cut(s)	27
CspAI	ACCGGT	1 cut(s)	371
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	3 cut(s)	68, 145, 213
DpnII	GATC	3 cut(s)	66, 143, 211
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
Eam1104I	CTCTTC	2 cut(s)	216, 346
EarI	CTCTTC	2 cut(s)	216, 346
EciI	GGCGGA	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	11
EcoICRI	GAGCTC	1 cut(s)	247
EcoNI	CCTNNNNNAGG	1 cut(s)	298
EcoRI	GAATTC	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	294
FaiI	YATR	1 cut(s)	327
FauI	CCCGC	3 cut(s)	15, 129, 258
Fnu4HI	GCNGC	7 cut(s)	24, 62, 88, 91, 254, 257, 260
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	7 cut(s)	24, 62, 88, 91, 254, 257, 260
FspBI	CTAG	2 cut(s)	195, 278
GlaI	GCGC	2 cut(s)	125, 283
GluI	GCNGC	7 cut(s)	24, 62, 88, 91, 254, 257, 260
GsuI	CTGGAG	2 cut(s)	100, 319
HaeII	RGCGCY	1 cut(s)	285
HaeIII	GGCC	2 cut(s)	272, 293
HapII	CCGG	3 cut(s)	37, 357, 372
HhaI	GCGC	2 cut(s)	126, 284
Hin6I	GCGC	2 cut(s)	124, 282
HinP1I	GCGC	2 cut(s)	124, 282
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	5 cut(s)	14, 43, 170, 330, 363
HpaII	CCGG	3 cut(s)	37, 357, 372
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	6 cut(s)	175, 182, 211, 216, 268, 387
Hpy188III	TCNNGA	1 cut(s)	70
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	2 cut(s)	170, 268
HpyAV	CCTTC	1 cut(s)	294
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	1 cut(s)	325
HpyF10VI	GCNNNNNNNGC	7 cut(s)	46, 84, 253, 259, 290, 387, 396
HpyF3I	CTNAG	1 cut(s)	83
HpySE526I	ACGT	1 cut(s)	288
HspAI	GCGC	2 cut(s)	124, 282
KspI	CCGCGG	1 cut(s)	27
Kzo9I	GATC	3 cut(s)	66, 143, 211
LguI	GCTCTTC	1 cut(s)	346
LmnI	GCTCC	3 cut(s)	252, 303, 359
LpnPI	CCDG	9 cut(s)	33, 50, 130, 190, 286, 292, 349, 370, 385
Lsp1109I	GCAGC	1 cut(s)	246
MaeI	CTAG	2 cut(s)	195, 278
MaeII	ACGT	1 cut(s)	288
MalI	GATC	3 cut(s)	68, 145, 213
MboI	GATC	3 cut(s)	66, 143, 211
MboII	GAAGA	2 cut(s)	233, 333
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	1 cut(s)	317
MlyI	GAGTC	3 cut(s)	23, 164, 324
MmeI	TCCRAC	3 cut(s)	135, 160, 246
MnlI	CCTC	6 cut(s)	92, 99, 167, 169, 217, 262
MseI	TTAA	1 cut(s)	312
MspA1I	CMGCKG	4 cut(s)	26, 64, 204, 259
MspI	CCGG	3 cut(s)	37, 357, 372
MvnI	CGCG	2 cut(s)	26, 124
MwoI	GCNNNNNNNGC	7 cut(s)	46, 84, 253, 259, 290, 387, 396
NdeII	GATC	3 cut(s)	66, 143, 211
NmeAIII	GCCGAG	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	346
PcsI	WCGNNNNNNNCGW	3 cut(s)	156, 165, 171
PfeI	GAWTC	2 cut(s)	43, 363
PinAI	ACCGGT	1 cut(s)	371
PkrI	GCNGC	7 cut(s)	25, 63, 89, 92, 255, 258, 261
PleI	GAGTC	3 cut(s)	22, 164, 324
PpsI	GAGTC	3 cut(s)	22, 164, 324
Psp124BI	GAGCTC	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	108
SacI	GAGCTC	1 cut(s)	249
SacII	CCGCGG	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	346
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	7 cut(s)	24, 62, 88, 91, 254, 257, 260
Sau3AI	GATC	3 cut(s)	66, 143, 211
Sau96I	GGNCC	1 cut(s)	108
SchI	GAGTC	3 cut(s)	23, 164, 324
SduI	GDGCHC	1 cut(s)	249
Sfr303I	CCGCGG	1 cut(s)	27
SgrBI	CCGCGG	1 cut(s)	27
SinI	GGWCC	1 cut(s)	108
Sse9I	AATT	1 cut(s)	317
SspMI	CTAG	2 cut(s)	195, 278
SstI	GAGCTC	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	294
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	2 cut(s)	69, 150
TasI	AATT	1 cut(s)	317
TauI	GCSGC	6 cut(s)	26, 64, 90, 93, 256, 259
TfiI	GAWTC	2 cut(s)	43, 363
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TseI	GCWGC	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	108
XagI	CCTNNNNNAGG	1 cut(s)	298
XapI	RAATTY	1 cut(s)	317
XspI	CTAG	2 cut(s)	195, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.