Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016685.1

Orthogroup ID

OG0005662

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 654

Gene Structure 653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016685.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 653 bp

gtcgtcgtcaccgtggtggcttcattttccctctgccgaatcctccgctgcatcaacaaccgcttcctccgccacgccactccctcctcaggcgacgacgcacccgctcgcgcctccagccggcgagtcactcctgccgaatccgccgccgccgatcccgtcgccgcgctcccggtcttcaccttctccgccatcaagaaccgccgagcctcctccaccgccgtcgtggcagccgactgcgccgtctgcctgtcgaagttcgagcacgacgatcagctccggctgctccctctctgctgtcacgccttccacgtatcgtgcatcgacacgtggctccactcccagcagacctgcccgctctgccggtcgccgatttccgcgtccgactccgagctcatgactctcgtcgagaatgcaggctcctccgcccgaggcggcggcgatagcttccggctcgagattggcaacgtcagccgccgccaaacaaccacgacgtccaactccagcgcgcgccgctcctactccatcggatcgttcgactacctcgtggacgacgactcggaggtccaattatccaatgccagaaacggctcgtctgataggaaagaagaggtgattgtcgttctcggcgagcccccgccgccgccgctgcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

218

Amino Acids

23.38

Weight (kDa)

6.56

Isoelectric Point (pI)

61.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60220
fragaria_vesca	FvH4_7g08860
malus_domestica	MD02G1223200.v1.1 MD07G1091500.v1.1
prunus_persica	Prupe.2G116700_v2.0.a1
pyrus_communis	pycom07g07480 pycom15g32160
rosa_chinensis	RchiOBHm_Chr1g0344271 RchiOBHm_Chr7g0197351
rosa_laevigata	RLG00000003768 RLG00000015102 RLG00000019331 RLG00000025671 RLG00000028912
rosa_multiflora	Rmu_sc0000019.1_g000012 Rmu_sc0000338.1_g000018 Rmu_sc0003703.1_g000004 Rmu_sc0005991.1_g000007 Rmu_sc0016684.1_g000002 Rmu_sc0016685.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309960
rosa_rugosa	Rorug01G0172700
rosa_samantha	Rh1AG188600 Rh1BG155100 Rh1CG174400 Rh2CG262100 Rh3BG248600
rosa_wichuraiana	Rw1G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	242, 563
AatII	GACGTC	1 cut(s)	497
Acc36I	ACCTGC	1 cut(s)	359
AccBSI	CCGCTC	3 cut(s)	107, 358, 516
AccII	CGCG	5 cut(s)	111, 167, 380, 509, 511
AclWI	GGATC	2 cut(s)	149, 538
AcvI	CACGTG	1 cut(s)	330
AcyI	GRCGYC	1 cut(s)	494
AfiI	CCNNNNNNNGG	2 cut(s)	89, 120
AflIII	ACRYGT	1 cut(s)	327
AleI	CACNNNNGTG	1 cut(s)	14
AluBI	AGCT	3 cut(s)	277, 394, 447
AluI	AGCT	3 cut(s)	277, 394, 447
Alw21I	GWGCWC	2 cut(s)	267, 396
AlwI	GGATC	2 cut(s)	149, 538
Ama87I	CYCGRG	2 cut(s)	429, 455
ApeKI	GCWGC	4 cut(s)	48, 230, 283, 649
AspLEI	GCGC	6 cut(s)	113, 169, 242, 509, 511, 513
AspS9I	GGNCC	1 cut(s)	565
AsuC2I	CCSGG	1 cut(s)	173
AsuHPI	GGTGA	2 cut(s)	172, 625
AvaI	CYCGRG	2 cut(s)	429, 455
AvaII	GGWCC	1 cut(s)	565
AxyI	CCTNAGG	1 cut(s)	88
BanII	GRGCYC	2 cut(s)	396, 636
BauI	CACGAG	1 cut(s)	545
BbrPI	CACGTG	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	169
Bbv12I	GWGCWC	2 cut(s)	267, 396
BbvI	GCAGC	4 cut(s)	35, 242, 270, 636
BccI	CCATC	2 cut(s)	200, 533
BceAI	ACGGC	3 cut(s)	206, 227, 604
BcnI	CCSGG	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	359
BglI	GCCNNNNNGGC	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	565
BmeT110I	CYCGRG	2 cut(s)	429, 455
BmgT120I	GGNCC	1 cut(s)	565
BmiI	GGNNCC	2 cut(s)	335, 421
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	2 cut(s)	60, 330
BoxI	GACNNNNGTC	1 cut(s)	404
BpiI	GAAGAC	1 cut(s)	169
BpmI	CTGGAG	2 cut(s)	100, 487
BpuMI	CCSGG	1 cut(s)	173
BsaAI	YACGTR	2 cut(s)	313, 330
BsaHI	GRCGYC	1 cut(s)	494
BsaJI	CCNNGG	2 cut(s)	12, 430
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 120
Bse118I	RCCGGY	2 cut(s)	120, 363
Bse21I	CCTNAGG	1 cut(s)	88
BseDI	CCNNGG	2 cut(s)	12, 430
BseLI	CCNNNNNNNGG	2 cut(s)	89, 120
BseMII	CTCAG	1 cut(s)	102
BsePI	GCGCGC	2 cut(s)	507, 509
BseRI	GAGGAG	3 cut(s)	76, 202, 412
BseXI	GCAGC	4 cut(s)	35, 242, 270, 636
BseYI	CCCAGC	1 cut(s)	342
Bsh1236I	CGCG	5 cut(s)	111, 167, 380, 509, 511
Bsh1285I	CGRYCG	1 cut(s)	368
BsiEI	CGRYCG	1 cut(s)	368
BsiHKAI	GWGCWC	2 cut(s)	267, 396
BsiHKCI	CYCGRG	2 cut(s)	429, 455
BsiSI	CCGG	5 cut(s)	121, 173, 280, 364, 451
BslI	CCNNNNNNNGG	2 cut(s)	89, 120
BsmI	GAATGC	1 cut(s)	418
BsoBI	CYCGRG	2 cut(s)	429, 455
Bsp1286I	GDGCHC	3 cut(s)	267, 396, 636
Bsp143I	GATC	3 cut(s)	154, 271, 530
BspCNI	CTCAG	1 cut(s)	101
BspFNI	CGCG	5 cut(s)	111, 167, 380, 509, 511
BspHI	TCATGA	1 cut(s)	396
BspLI	GGNNCC	2 cut(s)	335, 421
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	2 cut(s)	149, 538
BsrBI	CCGCTC	3 cut(s)	107, 358, 516
BsrFI	RCCGGY	2 cut(s)	120, 363
BssAI	RCCGGY	2 cut(s)	120, 363
BssECI	CCNNGG	2 cut(s)	12, 430
BssHII	GCGCGC	2 cut(s)	507, 509
BssMI	GATC	3 cut(s)	154, 271, 530
BssNI	GRCGYC	1 cut(s)	494
BssSI	CACGAG	1 cut(s)	545
Bst2BI	CACGAG	1 cut(s)	545
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	603
BstACI	GRCGYC	1 cut(s)	494
BstBAI	YACGTR	2 cut(s)	313, 330
BstC8I	GCNNGC	7 cut(s)	109, 122, 356, 418, 509, 511, 632
BstDEI	CTNAG	1 cut(s)	88
BstDSI	CCRYGG	1 cut(s)	12
BstFNI	CGCG	5 cut(s)	111, 167, 380, 509, 511
BstHHI	GCGC	6 cut(s)	113, 169, 242, 509, 511, 513
BstKTI	GATC	3 cut(s)	157, 274, 533
BstMBI	GATC	3 cut(s)	154, 271, 530
BstMCI	CGRYCG	1 cut(s)	368
BstPAI	GACNNNNGTC	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	171
BstUI	CGCG	5 cut(s)	111, 167, 380, 509, 511
BstV1I	GCAGC	4 cut(s)	35, 242, 270, 636
BstV2I	GAAGAC	1 cut(s)	169
Bsu36I	CCTNAGG	1 cut(s)	88
BtgI	CCRYGG	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	7 cut(s)	109, 122, 356, 418, 509, 511, 632
CciI	TCATGA	1 cut(s)	396
CfoI	GCGC	6 cut(s)	113, 169, 242, 509, 511, 513
Cfr10I	RCCGGY	2 cut(s)	120, 363
Cfr13I	GGNCC	1 cut(s)	565
CseI	GACGC	2 cut(s)	107, 369
CviAII	CATG	1 cut(s)	397
DdeI	CTNAG	1 cut(s)	88
DpnI	GATC	3 cut(s)	156, 273, 532
DpnII	GATC	3 cut(s)	154, 271, 530
DrdI	GACNNNNNNGTC	2 cut(s)	242, 563
DseDI	GACNNNNNNGTC	2 cut(s)	242, 563
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
EciI	GGCGGA	4 cut(s)	59, 133, 178, 415
Ecl136II	GAGCTC	1 cut(s)	394
Eco24I	GRGCYC	2 cut(s)	396, 636
Eco47I	GGWCC	1 cut(s)	565
Eco53kI	GAGCTC	1 cut(s)	394
Eco72I	CACGTG	1 cut(s)	330
Eco81I	CCTNAGG	1 cut(s)	88
Eco88I	CYCGRG	2 cut(s)	429, 455
EcoICRI	GAGCTC	1 cut(s)	394
EcoT38I	GRGCYC	2 cut(s)	396, 636
FaeI	CATG	1 cut(s)	400
FaiI	YATR	1 cut(s)	398
FatI	CATG	1 cut(s)	396
FauI	CCCGC	3 cut(s)	112, 363, 645
FriOI	GRGCYC	2 cut(s)	396, 636
GlaI	GCGC	6 cut(s)	112, 168, 241, 508, 510, 512
GsaI	CCCAGC	1 cut(s)	346
GsuI	CTGGAG	2 cut(s)	100, 487
HapII	CCGG	5 cut(s)	121, 173, 280, 364, 451
HgaI	GACGC	2 cut(s)	107, 369
HhaI	GCGC	6 cut(s)	113, 169, 242, 509, 511, 513
Hin1I	GRCGYC	1 cut(s)	494
Hin1II	CATG	1 cut(s)	400
Hin6I	GCGC	6 cut(s)	111, 167, 240, 507, 509, 511
HinP1I	GCGC	6 cut(s)	111, 167, 240, 507, 509, 511
HinfI	GANTC	6 cut(s)	39, 126, 140, 386, 400, 557
HpaII	CCGG	5 cut(s)	121, 173, 280, 364, 451
HphI	GGTGA	2 cut(s)	172, 625
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	5 cut(s)	385, 391, 530, 562, 598
Hpy188III	TCNNGA	4 cut(s)	196, 397, 409, 457
Hpy8I	GTNNAC	1 cut(s)	550
Hpy99I	CGWCG	9 cut(s)	8, 98, 101, 164, 227, 272, 410, 496, 557
HpyAV	CCTTC	2 cut(s)	193, 316
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	4 cut(s)	312, 329, 468, 494
HpyCH4V	TGCA	3 cut(s)	51, 321, 416
HpyF3I	CTNAG	1 cut(s)	88
HpySE526I	ACGT	4 cut(s)	312, 329, 468, 494
Hsp92I	GRCGYC	1 cut(s)	494
Hsp92II	CATG	1 cut(s)	400
HspAI	GCGC	6 cut(s)	111, 167, 240, 507, 509, 511
KroI	GCCGGC	1 cut(s)	120
KroNI	GCCGGC	1 cut(s)	122
Kzo9I	GATC	3 cut(s)	154, 271, 530
LmnI	GCTCC	6 cut(s)	174, 282, 291, 339, 425, 521
Lsp1109I	GCAGC	4 cut(s)	35, 242, 270, 636
LweI	GCATC	2 cut(s)	60, 330
MaeII	ACGT	4 cut(s)	312, 329, 468, 494
MaeIII	GTNAC	3 cut(s)	7, 127, 299
MalI	GATC	3 cut(s)	156, 273, 532
MbiI	CCGCTC	3 cut(s)	107, 358, 516
MboI	GATC	3 cut(s)	154, 271, 530
MboII	GAAGA	2 cut(s)	169, 620
MhlI	GDGCHC	3 cut(s)	267, 396, 636
MluCI	AATT	1 cut(s)	569
MlyI	GAGTC	4 cut(s)	135, 380, 394, 551
MmeI	TCCRAC	2 cut(s)	408, 522
MroNI	GCCGGC	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	14
MspA1I	CMGCKG	2 cut(s)	48, 649
MspI	CCGG	5 cut(s)	121, 173, 280, 364, 451
MspR9I	CCNGG	1 cut(s)	173
Mva1269I	GAATGC	1 cut(s)	418
MvnI	CGCG	5 cut(s)	111, 167, 380, 509, 511
NaeI	GCCGGC	1 cut(s)	122
NciI	CCSGG	1 cut(s)	173
NdeII	GATC	3 cut(s)	154, 271, 530
NgoMIV	GCCGGC	1 cut(s)	120
NlaIII	CATG	1 cut(s)	400
NlaIV	GGNNCC	2 cut(s)	335, 421
NmeAIII	GCCGAG	2 cut(s)	230, 606
NmuCI	GTSAC	3 cut(s)	7, 127, 299
OliI	CACNNNNGTG	1 cut(s)	14
PaeR7I	CTCGAG	1 cut(s)	455
PagI	TCATGA	1 cut(s)	396
PauI	GCGCGC	2 cut(s)	507, 509
PcsI	WCGNNNNNNNCGW	8 cut(s)	9, 231, 267, 309, 534, 543, 552, 627
PctI	GAATGC	1 cut(s)	418
PdiI	GCCGGC	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	39, 140
PleI	GAGTC	4 cut(s)	134, 380, 394, 551
PmaCI	CACGTG	1 cut(s)	330
PmlI	CACGTG	1 cut(s)	330
PpsI	GAGTC	4 cut(s)	134, 380, 394, 551
Ppu21I	YACGTR	2 cut(s)	313, 330
PshAI	GACNNNNGTC	1 cut(s)	404
Psp124BI	GAGCTC	1 cut(s)	396
PspCI	CACGTG	1 cut(s)	330
PspFI	CCCAGC	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	335, 421
PspPI	GGNCC	1 cut(s)	565
PteI	GCGCGC	2 cut(s)	507, 509
RseI	CAYNNNNRTG	1 cut(s)	14
SacI	GAGCTC	1 cut(s)	396
Sau3AI	GATC	3 cut(s)	154, 271, 530
Sau96I	GGNCC	1 cut(s)	565
SchI	GAGTC	4 cut(s)	135, 380, 394, 551
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	3 cut(s)	267, 396, 636
SfaNI	GCATC	2 cut(s)	60, 330
Sfr274I	CTCGAG	1 cut(s)	455
SinI	GGWCC	1 cut(s)	565
SlaI	CTCGAG	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	1 cut(s)	569
SstI	GAGCTC	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	4 cut(s)	315, 332, 471, 497
TaqI	TCGA	6 cut(s)	254, 261, 324, 408, 456, 537
TasI	AATT	1 cut(s)	569
TfiI	GAWTC	2 cut(s)	39, 140
TseFI	GTSAC	3 cut(s)	7, 127, 299
TseI	GCWGC	4 cut(s)	48, 230, 283, 649
Tsp45I	GTSAC	3 cut(s)	7, 127, 299
TspDTI	ATGAA	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XhoI	CTCGAG	1 cut(s)	455
ZraI	GACGTC	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.