Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005662

Physical Location & Seq

Genomic Coordinates Forward (+)

6795974 .. 6796945

Gene Structure 972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g07480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTCGGAAACAACAGCAGCATCACCAGCGCCGTCACCGCCATTACTACCTCACCGAAAACCCTCCTCCTCCTTCAAAACCCTAAGCCCGAACCTCCTCATCATCATCGTCATCCTCGCAGCCACACTCGTGGCCTCAATCTGCCTCATCCTCCGCCACCTCAACCGCCGGTGCATCCGTCGCCTTGCTCCCTCACCCTCCGACTCATTCTCCGACTCCCGCCGCATATCCACTTGCCGAATCAATCCCGATACCTCTCCTTCCCTCCCTCTCTACACCTTCTCCTCCATCGCCCGCCGATCTTCCTCTACCATCTCCACCGACTGCGCCGTGTGTCTGTCGAAATTCGAGCCCAGCGACGAGGTCCACCTCCTCCCGCTCTGCTGCCATACCTTCCACTCCGTCTGCATCGACCCGTGGCTACAGTCGCAGCAGACTTGTCCGCTATGTCGCTCCTCGATCGCCGCTTCCGACGCCGAGCTCATGATGCTCGTCTCCTCCAATGCCGAACCAGCCACAGCGAACGGTAGCGGACGCTTCCGTCTCGAAATCGGGAACGTGAGCCTCCGCAACAACAATCAGACGACAACGACGAATTCCTCCCATCGACACTCCTACTCCGTTGGCTCCTTCGATTACATTGCAGACGAGGAGACGTCGGAAGTGCGGCTGAGCAACGCTGAACGAGAGAAAGATGAGGTCGTCTTGGCAGTGGCAGAGCCGGAACCGCCAATTCCGCCGTTGATCGTAGCCGCGGAGGTCGGCTCGGGAAGGTCAAGCTGGCTCAAAGACTACATTGATCAACTGTCCAGCACCCTCTCGTCCCGAGATATGTCATTTCGGAGCTCTGGAAGATTCTACACTGGAAGTAGCTGCCGGAGCGAGGTGTCTATCGCCGGCGATTCGAGCTTGGAAACAGAGCGCGTCGGAGAAGAGATATCCGAGATGTTTCGGTGGCTTGCAGGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

324

Amino Acids

35.22

Weight (kDa)

5.85

Isoelectric Point (pI)

73.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	108 - 151	5.1e-13	Ring finger domain
zf-RING_11	PF17123	108 - 137	3.8e-08	RING-like zinc finger
zf-rbx1	PF12678	110 - 151	4.3e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60220
fragaria_vesca	FvH4_7g08860
malus_domestica	MD02G1223200.v1.1 MD07G1091500.v1.1
prunus_persica	Prupe.2G116700_v2.0.a1
pyrus_communis	pycom07g07480 pycom15g32160
rosa_chinensis	RchiOBHm_Chr1g0344271 RchiOBHm_Chr7g0197351
rosa_laevigata	RLG00000003768 RLG00000015102 RLG00000019331 RLG00000025671 RLG00000028912
rosa_multiflora	Rmu_sc0000019.1_g000012 Rmu_sc0000338.1_g000018 Rmu_sc0003703.1_g000004 Rmu_sc0005991.1_g000007 Rmu_sc0016684.1_g000002 Rmu_sc0016685.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309960
rosa_rugosa	Rorug01G0172700
rosa_samantha	Rh1AG188600 Rh1BG155100 Rh1CG174400 Rh2CG262100 Rh3BG248600
rosa_wichuraiana	Rw1G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	540
AatII	GACGTC	1 cut(s)	659
AccBSI	CCGCTC	1 cut(s)	379
AccII	CGCG	2 cut(s)	755, 924
AcsI	RAATTY	2 cut(s)	344, 595
AcyI	GRCGYC	2 cut(s)	474, 656
AfiI	CCNNNNNNNGG	1 cut(s)	883
AgsI	TTSAA	1 cut(s)	76
AleI	CACNNNNGTG	1 cut(s)	128
AluBI	AGCT	5 cut(s)	481, 780, 846, 873, 909
AluI	AGCT	5 cut(s)	481, 780, 846, 873, 909
Alw21I	GWGCWC	2 cut(s)	483, 848
Alw26I	GTCTC	3 cut(s)	499, 548, 647
Ama87I	CYCGRG	2 cut(s)	766, 825
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	5 cut(s)	17, 119, 384, 430, 873
ApoI	RAATTY	2 cut(s)	344, 595
AspLEI	GCGC	3 cut(s)	31, 329, 924
AspS9I	GGNCC	1 cut(s)	364
AsuHPI	GGTGA	4 cut(s)	15, 27, 44, 186
AvaI	CYCGRG	2 cut(s)	766, 825
AvaII	GGWCC	1 cut(s)	364
BanII	GRGCYC	3 cut(s)	354, 483, 848
BauI	CACGAG	1 cut(s)	128
Bbv12I	GWGCWC	2 cut(s)	483, 848
BbvI	GCAGC	5 cut(s)	29, 131, 371, 442, 860
BccI	CCATC	3 cut(s)	296, 320, 612
BceAI	ACGGC	3 cut(s)	16, 314, 724
BcgI	CGANNNNNNTGC	2 cut(s)	623, 657
BclI	TGATCA	1 cut(s)	799
BcoDI	GTCTC	3 cut(s)	499, 548, 647
BfmI	CTRYAG	1 cut(s)	422
BfoI	RGCGCY	1 cut(s)	32
BisI	GCNGC	9 cut(s)	18, 120, 223, 385, 431, 465, 668, 753, 874
BlpI	GCTNAGC	1 cut(s)	671
BlsI	GCNGC	9 cut(s)	19, 121, 224, 386, 432, 466, 669, 754, 875
Bme18I	GGWCC	1 cut(s)	364
BmeT110I	CYCGRG	2 cut(s)	766, 825
BmgT120I	GGNCC	1 cut(s)	364
BmiI	GGNNCC	2 cut(s)	628, 726
BmsI	GCATC	4 cut(s)	29, 183, 417, 477
BplI	GAGNNNNNCTC	2 cut(s)	749, 781
Bpu10I	CCTNAGC	1 cut(s)	83
Bpu1102I	GCTNAGC	1 cut(s)	671
BsaHI	GRCGYC	2 cut(s)	474, 656
BsaJI	CCNNGG	2 cut(s)	416, 753
BsaXI	ACNNNNNCTCC	6 cut(s)	194, 224, 266, 296, 602, 632
Bsc4I	CCNNNNNNNGG	1 cut(s)	883
Bse118I	RCCGGY	2 cut(s)	168, 896
Bse1I	ACTGG	1 cut(s)	868
Bse3DI	GCAATG	1 cut(s)	639
BseDI	CCNNGG	2 cut(s)	416, 753
BseGI	GGATG	3 cut(s)	111, 147, 174
BseLI	CCNNNNNNNGG	1 cut(s)	883
BseMI	GCAATG	1 cut(s)	639
BseMII	CTCAG	1 cut(s)	662
BseNI	ACTGG	1 cut(s)	868
BseRI	GAGGAG	8 cut(s)	55, 58, 86, 274, 362, 445, 487, 665
BseXI	GCAGC	5 cut(s)	29, 131, 371, 442, 860
BseYI	CCCAGC	1 cut(s)	353
Bsh1236I	CGCG	2 cut(s)	755, 924
Bsh1285I	CGRYCG	1 cut(s)	462
BshFI	GGCC	1 cut(s)	134
BsiEI	CGRYCG	1 cut(s)	462
BsiHKAI	GWGCWC	2 cut(s)	483, 848
BsiHKCI	CYCGRG	2 cut(s)	766, 825
BsiSI	CCGG	4 cut(s)	169, 722, 877, 897
BslFI	GGGAC	1 cut(s)	808
BslI	CCNNNNNNNGG	1 cut(s)	883
BsmAI	GTCTC	3 cut(s)	499, 548, 647
BsmBI	CGTCTC	3 cut(s)	499, 548, 647
BsmFI	GGGAC	1 cut(s)	808
BsnI	GGCC	1 cut(s)	134
BsoBI	CYCGRG	2 cut(s)	766, 825
Bsp1286I	GDGCHC	3 cut(s)	354, 483, 848
Bsp143I	GATC	4 cut(s)	299, 459, 744, 799
Bsp1720I	GCTNAGC	1 cut(s)	671
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	663
BspFNI	CGCG	2 cut(s)	755, 924
BspHI	TCATGA	1 cut(s)	483
BspLI	GGNNCC	2 cut(s)	628, 726
BsrBI	CCGCTC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	639
BsrFI	RCCGGY	2 cut(s)	168, 896
BsrI	ACTGG	1 cut(s)	868
BssAI	RCCGGY	2 cut(s)	168, 896
BssECI	CCNNGG	2 cut(s)	416, 753
BssMI	GATC	4 cut(s)	299, 459, 744, 799
BssNI	GRCGYC	2 cut(s)	474, 656
BssSI	CACGAG	1 cut(s)	128
Bst2BI	CACGAG	1 cut(s)	128
Bst4CI	ACNGT	3 cut(s)	426, 527, 807
Bst6I	CTCTTC	1 cut(s)	927
BstACI	GRCGYC	2 cut(s)	474, 656
BstC8I	GCNNGC	4 cut(s)	295, 782, 898, 960
BstDEI	CTNAG	2 cut(s)	83, 671
BstDSI	CCRYGG	2 cut(s)	416, 753
BstF5I	GGATG	3 cut(s)	111, 147, 174
BstFNI	CGCG	2 cut(s)	755, 924
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	3 cut(s)	31, 329, 924
BstKTI	GATC	4 cut(s)	302, 462, 747, 802
BstMAI	GTCTC	3 cut(s)	499, 548, 647
BstMBI	GATC	4 cut(s)	299, 459, 744, 799
BstMCI	CGRYCG	1 cut(s)	462
BstSFI	CTRYAG	1 cut(s)	422
BstUI	CGCG	2 cut(s)	755, 924
BstV1I	GCAGC	5 cut(s)	29, 131, 371, 442, 860
BstXI	CCANNNNNNTGG	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	134
BtgI	CCRYGG	2 cut(s)	416, 753
BtgZI	GCGATG	1 cut(s)	274
BtsCI	GGATG	3 cut(s)	111, 147, 174
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	2 cut(s)	717, 861
Cac8I	GCNNGC	4 cut(s)	295, 782, 898, 960
CciI	TCATGA	1 cut(s)	483
CfoI	GCGC	3 cut(s)	31, 329, 924
Cfr10I	RCCGGY	2 cut(s)	168, 896
Cfr13I	GGNCC	1 cut(s)	364
Cfr42I	CCGCGG	1 cut(s)	756
CseI	GACGC	3 cut(s)	482, 543, 913
CviAII	CATG	1 cut(s)	484
DdeI	CTNAG	2 cut(s)	83, 671
DpnI	GATC	4 cut(s)	301, 461, 746, 801
DpnII	GATC	4 cut(s)	299, 459, 744, 799
DrdI	GACNNNNNNGTC	1 cut(s)	540
DseDI	GACNNNNNNGTC	1 cut(s)	540
Eam1104I	CTCTTC	1 cut(s)	927
EarI	CTCTTC	1 cut(s)	927
EciI	GGCGGA	2 cut(s)	143, 726
Ecl136II	GAGCTC	2 cut(s)	481, 846
Eco24I	GRGCYC	3 cut(s)	354, 483, 848
Eco32I	GATATC	1 cut(s)	939
Eco47I	GGWCC	1 cut(s)	364
Eco53kI	GAGCTC	2 cut(s)	481, 846
Eco88I	CYCGRG	2 cut(s)	766, 825
EcoICRI	GAGCTC	2 cut(s)	481, 846
EcoRI	GAATTC	1 cut(s)	595
EcoRV	GATATC	1 cut(s)	939
EcoT38I	GRGCYC	3 cut(s)	354, 483, 848
Esp3I	CGTCTC	3 cut(s)	499, 548, 647
FaeI	CATG	1 cut(s)	487
FaiI	YATR	6 cut(s)	227, 390, 448, 485, 833, 970
FaqI	GGGAC	1 cut(s)	808
FatI	CATG	1 cut(s)	483
FauI	CCCGC	3 cut(s)	227, 302, 384
FbaI	TGATCA	1 cut(s)	799
Fnu4HI	GCNGC	9 cut(s)	18, 120, 223, 385, 431, 465, 668, 753, 874
FokI	GGATG	3 cut(s)	98, 134, 161
FriOI	GRGCYC	3 cut(s)	354, 483, 848
Fsp4HI	GCNGC	9 cut(s)	18, 120, 223, 385, 431, 465, 668, 753, 874
GlaI	GCGC	3 cut(s)	30, 328, 923
GluI	GCNGC	9 cut(s)	18, 120, 223, 385, 431, 465, 668, 753, 874
GsaI	CCCAGC	1 cut(s)	357
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	4 cut(s)	169, 722, 877, 897
HgaI	GACGC	3 cut(s)	482, 543, 913
HhaI	GCGC	3 cut(s)	31, 329, 924
Hin1I	GRCGYC	2 cut(s)	474, 656
Hin1II	CATG	1 cut(s)	487
Hin6I	GCGC	3 cut(s)	29, 327, 922
HinP1I	GCGC	3 cut(s)	29, 327, 922
HinfI	GANTC	5 cut(s)	203, 215, 240, 855, 902
HpaII	CCGG	4 cut(s)	169, 722, 877, 897
HphI	GGTGA	4 cut(s)	15, 27, 44, 186
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	9 cut(s)	7, 202, 214, 472, 582, 661, 843, 929, 943
Hpy188III	TCNNGA	7 cut(s)	248, 484, 545, 553, 768, 825, 849
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	6 cut(s)	183, 362, 476, 595, 661, 929
HpyAV	CCTTC	6 cut(s)	82, 270, 289, 403, 640, 765
HpyCH4III	ACNGT	3 cut(s)	426, 527, 807
HpyCH4IV	ACGT	2 cut(s)	558, 656
HpyCH4V	TGCA	4 cut(s)	174, 408, 644, 962
HpyF3I	CTNAG	2 cut(s)	83, 671
HpySE526I	ACGT	2 cut(s)	558, 656
Hsp92I	GRCGYC	2 cut(s)	474, 656
Hsp92II	CATG	1 cut(s)	487
HspAI	GCGC	3 cut(s)	29, 327, 922
KroI	GCCGGC	1 cut(s)	896
KroNI	GCCGGC	1 cut(s)	898
Ksp22I	TGATCA	1 cut(s)	799
KspI	CCGCGG	1 cut(s)	756
Kzo9I	GATC	4 cut(s)	299, 459, 744, 799
LmnI	GCTCC	5 cut(s)	193, 458, 632, 843, 879
Lsp1109I	GCAGC	5 cut(s)	29, 131, 371, 442, 860
LweI	GCATC	4 cut(s)	29, 183, 417, 477
MaeII	ACGT	2 cut(s)	558, 656
MaeIII	GTNAC	1 cut(s)	33
MalI	GATC	4 cut(s)	301, 461, 746, 801
MbiI	CCGCTC	1 cut(s)	379
MboI	GATC	4 cut(s)	299, 459, 744, 799
MboII	GAAGA	3 cut(s)	294, 864, 944
MhlI	GDGCHC	3 cut(s)	354, 483, 848
MluCI	AATT	3 cut(s)	344, 595, 732
MlyI	GAGTC	2 cut(s)	197, 209
MmeI	TCCRAC	5 cut(s)	225, 237, 495, 639, 907
MreI	CGCCGGCG	1 cut(s)	896
MroNI	GCCGGC	1 cut(s)	896
MslI	CAYNNNNRTG	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	755
MspI	CCGG	4 cut(s)	169, 722, 877, 897
MvnI	CGCG	2 cut(s)	755, 924
NaeI	GCCGGC	1 cut(s)	898
NdeII	GATC	4 cut(s)	299, 459, 744, 799
NgoMIV	GCCGGC	1 cut(s)	896
NlaIII	CATG	1 cut(s)	487
NlaIV	GGNNCC	2 cut(s)	628, 726
NmeAIII	GCCGAG	1 cut(s)	502
NmuCI	GTSAC	1 cut(s)	33
OliI	CACNNNNGTG	1 cut(s)	128
PagI	TCATGA	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	3 cut(s)	354, 468, 590
PdiI	GCCGGC	1 cut(s)	898
PfeI	GAWTC	3 cut(s)	240, 855, 902
PflFI	GACNNNGTC	1 cut(s)	362
PkrI	GCNGC	9 cut(s)	19, 121, 224, 386, 432, 466, 669, 754, 875
Ple19I	CGATCG	1 cut(s)	462
PleI	GAGTC	2 cut(s)	197, 209
PpsI	GAGTC	2 cut(s)	197, 209
Psp124BI	GAGCTC	2 cut(s)	483, 848
PspFI	CCCAGC	1 cut(s)	353
PspN4I	GGNNCC	2 cut(s)	628, 726
PspPI	GGNCC	1 cut(s)	364
PsyI	GACNNNGTC	1 cut(s)	362
PvuI	CGATCG	1 cut(s)	462
RseI	CAYNNNNRTG	1 cut(s)	128
SacI	GAGCTC	2 cut(s)	483, 848
SacII	CCGCGG	1 cut(s)	756
SatI	GCNGC	9 cut(s)	18, 120, 223, 385, 431, 465, 668, 753, 874
Sau3AI	GATC	4 cut(s)	299, 459, 744, 799
Sau96I	GGNCC	1 cut(s)	364
SchI	GAGTC	2 cut(s)	197, 209
SduI	GDGCHC	3 cut(s)	354, 483, 848
SfaNI	GCATC	4 cut(s)	29, 183, 417, 477
SfcI	CTRYAG	1 cut(s)	422
Sfr303I	CCGCGG	1 cut(s)	756
SgrAI	CRCCGGYG	2 cut(s)	168, 896
SgrBI	CCGCGG	1 cut(s)	756
SinI	GGWCC	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	128
Sse9I	AATT	3 cut(s)	344, 595, 732
SstI	GAGCTC	2 cut(s)	483, 848
TaaI	ACNGT	3 cut(s)	426, 527, 807
TaiI	ACGT	2 cut(s)	561, 659
TaqI	TCGA	8 cut(s)	341, 348, 411, 458, 546, 607, 633, 905
TasI	AATT	3 cut(s)	344, 595, 732
TauI	GCSGC	4 cut(s)	225, 467, 670, 755
TfiI	GAWTC	3 cut(s)	240, 855, 902
TscAI	CASTG	2 cut(s)	717, 868
TseFI	GTSAC	1 cut(s)	33
TseI	GCWGC	5 cut(s)	17, 119, 384, 430, 873
Tsp45I	GTSAC	1 cut(s)	33
TspGWI	ACGGA	4 cut(s)	167, 391, 530, 610
TspRI	CASTG	2 cut(s)	717, 868
Tth111I	GACNNNGTC	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	364
XapI	RAATTY	2 cut(s)	344, 595
ZraI	GACGTC	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.