Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005662

Physical Location & Seq

Genomic Coordinates Forward (+)

17482937 .. 17484970

Gene Structure 2034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G116700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTCGCAGAGCTCACCGCCATCACCGCCAGCACCGCCATTGATACCCTCTGAACCTCAGCACCATTCTTTCTCCTTCAAAACCCTAAGCCCAAGCCTCCTCATAATCCTCCTCATCCTCGCCGTCACGGTCGTCGCCTCAATCTCGCTCTGCTTCCTCCTCCGCCACCTCAACGGCCGCTGTCTCCGCCGCCTCACCCCGTCCTCAGCCGGGTCAGCACCAGCCGAGTCGCGTCGAATCTCGACTCGCCGAGTCAGCCCCGACAACGCAGCCTCCCTCCCTCTCTTCACCTACTCCACCATCACCCGCCGGTCTTCCTCTACCGTCTCCGCCGACTGCGCCGTCTGCTTGTCGAAGTTCGAGCCGAGTGACGAGCTTCGACTCCTCCCTCTCTGCTGCCACGCCTTCCACGCCATGTGCATCGACACGTGGCTTCAATCGCACCAGACGTGTCCTCTGTGCCGCTCCCCGATCGCCGCCTCCGACGCCGAGCTCATGGCGCTCGTCTCCAATGCCGGCGCTGCGACGATGAACAGCGGAAGCTTCCGTCTGGAGATCGGAAACGTAAGTCGCCGCAACCGAACGACGTCGGATGAGAGCTCCATTCCGGCCGATGCTAATCGCCGGTCCTACTCAATTGGTTCATTCGAGTATGTCGTCGAGGACGAGTCTTCGGAGGTGCGGTTGAGCAATGCGCAGAAGGAAGATATCATTTTGGTCGTCGCCGAACCACCGGAGCCGCCATCGCAAGCGTTAGAGCCGAGCCTAGCCGCCGAGGTAGGCTCGGGGAGGACTAGTTGGCTCAAAGACTACATCGACCGCCTATCGAGCTCTCTATCTTCTCGTGACATATCATTTCGCAGCTCGGGGAGATTTTTCACCGGAAGCAGCCGCCGGAGTGAGGCTTCCATAATCGGAGATTGGAGCTTGGAGTCTGGCCGGGTCGGGGAGGAGATATCGGAGATGTTCCGTTGGCTATCAGGGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

330

Amino Acids

35.73

Weight (kDa)

6.33

Isoelectric Point (pI)

79.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60220
fragaria_vesca	FvH4_7g08860
malus_domestica	MD02G1223200.v1.1 MD07G1091500.v1.1
prunus_persica	Prupe.2G116700_v2.0.a1
pyrus_communis	pycom07g07480 pycom15g32160
rosa_chinensis	RchiOBHm_Chr1g0344271 RchiOBHm_Chr7g0197351
rosa_laevigata	RLG00000003768 RLG00000015102 RLG00000019331 RLG00000025671 RLG00000028912
rosa_multiflora	Rmu_sc0000019.1_g000012 Rmu_sc0000338.1_g000018 Rmu_sc0003703.1_g000004 Rmu_sc0005991.1_g000007 Rmu_sc0016684.1_g000002 Rmu_sc0016685.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309960
rosa_rugosa	Rorug01G0172700
rosa_samantha	Rh1AG188600 Rh1BG155100 Rh1CG174400 Rh2CG262100 Rh3BG248600
rosa_wichuraiana	Rw1G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
AatII	GACGTC	1 cut(s)	590
Acc16I	TGCGCA	1 cut(s)	696
AccBSI	CCGCTC	1 cut(s)	465
AccII	CGCG	1 cut(s)	232
AcoI	YGGCCR	3 cut(s)	175, 609, 937
AcvI	CACGTG	1 cut(s)	429
AcyI	GRCGYC	2 cut(s)	486, 587
AfiI	CCNNNNNNNGG	3 cut(s)	210, 901, 946
AflIII	ACRYGT	2 cut(s)	426, 449
AgsI	TTSAA	2 cut(s)	79, 437
AhlI	ACTAGT	1 cut(s)	794
AjiI	CACGTC	1 cut(s)	450
AluBI	AGCT	8 cut(s)	12, 376, 493, 543, 600, 831, 864, 927
AluI	AGCT	8 cut(s)	12, 376, 493, 543, 600, 831, 864, 927
Alw21I	GWGCWC	4 cut(s)	14, 495, 602, 833
Alw26I	GTCTC	3 cut(s)	188, 331, 511
Ama87I	CYCGRG	2 cut(s)	784, 865
AoxI	GGCC	3 cut(s)	175, 609, 937
ApeKI	GCWGC	5 cut(s)	269, 396, 521, 861, 888
AspLEI	GCGC	4 cut(s)	341, 502, 521, 697
AspS9I	GGNCC	1 cut(s)	627
AsuC2I	CCSGG	2 cut(s)	211, 941
AsuHPI	GGTGA	6 cut(s)	6, 15, 187, 280, 295, 871
AvaI	CYCGRG	2 cut(s)	784, 865
AvaII	GGWCC	1 cut(s)	627
BanII	GRGCYC	4 cut(s)	14, 495, 602, 833
BauI	CACGAG	1 cut(s)	843
BbrPI	CACGTG	1 cut(s)	429
BbsI	GAAGAC	2 cut(s)	306, 663
Bbv12I	GWGCWC	4 cut(s)	14, 495, 602, 833
BbvCI	CCTCAGC	2 cut(s)	57, 205
BbvI	GCAGC	5 cut(s)	281, 383, 508, 873, 900
BccI	CCATC	3 cut(s)	28, 308, 751
BceAI	ACGGC	3 cut(s)	107, 190, 326
BcnI	CCSGG	2 cut(s)	211, 941
BcoDI	GTCTC	3 cut(s)	188, 331, 511
BcuI	ACTAGT	1 cut(s)	794
BfaI	CTAG	2 cut(s)	767, 795
BfoI	RGCGCY	2 cut(s)	503, 522
Bme1390I	CCNGG	2 cut(s)	211, 941
Bme18I	GGWCC	1 cut(s)	627
BmeT110I	CYCGRG	2 cut(s)	784, 865
BmgBI	CACGTC	1 cut(s)	450
BmgT120I	GGNCC	1 cut(s)	627
BmiI	GGNNCC	1 cut(s)	738
BmrFI	CCNGG	2 cut(s)	211, 941
BmsI	GCATC	2 cut(s)	429, 604
BpiI	GAAGAC	2 cut(s)	306, 663
BplI	GAGNNNNNCTC	2 cut(s)	767, 799
BpmI	CTGGAG	1 cut(s)	572
Bpu10I	CCTNAGC	3 cut(s)	57, 86, 205
BpuMI	CCSGG	2 cut(s)	211, 941
BsaAI	YACGTR	1 cut(s)	429
BsaBI	GATNNNNATC	1 cut(s)	618
BsaHI	GRCGYC	2 cut(s)	486, 587
BsaJI	CCNNGG	1 cut(s)	774
BsaWI	WCCGGW	2 cut(s)	733, 881
BsaXI	ACNNNNNCTCC	6 cut(s)	257, 287, 668, 698, 781, 811
Bsc4I	CCNNNNNNNGG	3 cut(s)	210, 901, 946
Bse118I	RCCGGY	3 cut(s)	309, 515, 624
Bse3DI	GCAATG	1 cut(s)	697
Bse8I	GATNNNNATC	1 cut(s)	618
BseDI	CCNNGG	1 cut(s)	774
BseGI	GGATG	2 cut(s)	114, 598
BseJI	GATNNNNATC	1 cut(s)	618
BseLI	CCNNNNNNNGG	3 cut(s)	210, 901, 946
BseMI	GCAATG	1 cut(s)	697
BseMII	CTCAG	2 cut(s)	71, 219
BseRI	GAGGAG	5 cut(s)	89, 101, 149, 374, 965
BseX3I	CGGCCG	2 cut(s)	175, 609
BseXI	GCAGC	5 cut(s)	281, 383, 508, 873, 900
Bsh1236I	CGCG	1 cut(s)	232
Bsh1285I	CGRYCG	5 cut(s)	132, 178, 474, 612, 820
BshFI	GGCC	3 cut(s)	177, 611, 939
BsiEI	CGRYCG	5 cut(s)	132, 178, 474, 612, 820
BsiHKAI	GWGCWC	4 cut(s)	14, 495, 602, 833
BsiHKCI	CYCGRG	2 cut(s)	784, 865
BsiSI	CCGG	9 cut(s)	210, 310, 516, 608, 625, 734, 882, 895, 940
BslI	CCNNNNNNNGG	3 cut(s)	210, 901, 946
BsmAI	GTCTC	3 cut(s)	188, 331, 511
BsmBI	CGTCTC	2 cut(s)	331, 511
BsnI	GGCC	3 cut(s)	177, 611, 939
BsoBI	CYCGRG	2 cut(s)	784, 865
Bsp1286I	GDGCHC	4 cut(s)	14, 495, 602, 833
Bsp143I	GATC	2 cut(s)	471, 555
BspANI	GGCC	3 cut(s)	177, 611, 939
BspCNI	CTCAG	2 cut(s)	70, 218
BspFNI	CGCG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	738
BsrBI	CCGCTC	1 cut(s)	465
BsrDI	GCAATG	1 cut(s)	697
BsrFI	RCCGGY	3 cut(s)	309, 515, 624
BssAI	RCCGGY	3 cut(s)	309, 515, 624
BssECI	CCNNGG	1 cut(s)	774
BssMI	GATC	2 cut(s)	471, 555
BssNI	GRCGYC	2 cut(s)	486, 587
BssSI	CACGAG	1 cut(s)	843
Bst2BI	CACGAG	1 cut(s)	843
Bst4CI	ACNGT	2 cut(s)	130, 325
Bst6I	CTCTTC	1 cut(s)	290
BstACI	GRCGYC	2 cut(s)	486, 587
BstBAI	YACGTR	1 cut(s)	429
BstC8I	GCNNGC	3 cut(s)	30, 517, 750
BstDEI	CTNAG	3 cut(s)	57, 86, 205
BstF5I	GGATG	2 cut(s)	114, 598
BstFNI	CGCG	1 cut(s)	232
BstH2I	RGCGCY	2 cut(s)	503, 522
BstHHI	GCGC	4 cut(s)	341, 502, 521, 697
BstKTI	GATC	2 cut(s)	474, 558
BstMAI	GTCTC	3 cut(s)	188, 331, 511
BstMBI	GATC	2 cut(s)	471, 555
BstMCI	CGRYCG	5 cut(s)	132, 178, 474, 612, 820
BstSCI	CCNGG	2 cut(s)	209, 939
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	5 cut(s)	281, 383, 508, 873, 900
BstV2I	GAAGAC	2 cut(s)	306, 663
BstZI	CGGCCG	2 cut(s)	175, 609
BsuRI	GGCC	3 cut(s)	177, 611, 939
BtgZI	GCGATG	1 cut(s)	729
BtrI	CACGTC	1 cut(s)	450
BtsCI	GGATG	2 cut(s)	114, 598
Cac8I	GCNNGC	3 cut(s)	30, 517, 750
CfoI	GCGC	4 cut(s)	341, 502, 521, 697
Cfr10I	RCCGGY	3 cut(s)	309, 515, 624
Cfr13I	GGNCC	1 cut(s)	627
CseI	GACGC	2 cut(s)	221, 494
CviAII	CATG	2 cut(s)	415, 496
DdeI	CTNAG	3 cut(s)	57, 86, 205
DpnI	GATC	2 cut(s)	473, 557
DpnII	GATC	2 cut(s)	471, 555
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
EaeI	YGGCCR	3 cut(s)	175, 609, 937
EagI	CGGCCG	2 cut(s)	175, 609
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
EciI	GGCGGA	3 cut(s)	152, 176, 319
Ecl136II	GAGCTC	4 cut(s)	12, 493, 600, 831
EclXI	CGGCCG	2 cut(s)	175, 609
Eco24I	GRGCYC	4 cut(s)	14, 495, 602, 833
Eco32I	GATATC	2 cut(s)	709, 957
Eco47I	GGWCC	1 cut(s)	627
Eco52I	CGGCCG	2 cut(s)	175, 609
Eco53kI	GAGCTC	4 cut(s)	12, 493, 600, 831
Eco72I	CACGTG	1 cut(s)	429
Eco88I	CYCGRG	2 cut(s)	784, 865
EcoICRI	GAGCTC	4 cut(s)	12, 493, 600, 831
EcoRV	GATATC	2 cut(s)	709, 957
EcoT38I	GRGCYC	4 cut(s)	14, 495, 602, 833
Esp3I	CGTCTC	2 cut(s)	331, 511
FaeI	CATG	2 cut(s)	418, 499
FaiI	YATR	6 cut(s)	104, 416, 497, 654, 851, 911
FatI	CATG	2 cut(s)	414, 495
FauI	CCCGC	1 cut(s)	314
FokI	GGATG	2 cut(s)	101, 605
FriOI	GRGCYC	4 cut(s)	14, 495, 602, 833
FspBI	CTAG	2 cut(s)	767, 795
FspI	TGCGCA	1 cut(s)	696
GlaI	GCGC	4 cut(s)	340, 501, 520, 696
GsuI	CTGGAG	1 cut(s)	572
HaeII	RGCGCY	2 cut(s)	503, 522
HaeIII	GGCC	3 cut(s)	177, 611, 939
HapII	CCGG	9 cut(s)	210, 310, 516, 608, 625, 734, 882, 895, 940
HgaI	GACGC	2 cut(s)	221, 494
HhaI	GCGC	4 cut(s)	341, 502, 521, 697
Hin1I	GRCGYC	2 cut(s)	486, 587
Hin1II	CATG	2 cut(s)	418, 499
Hin6I	GCGC	4 cut(s)	339, 500, 519, 695
HinP1I	GCGC	4 cut(s)	339, 500, 519, 695
HindIII	AAGCTT	1 cut(s)	541
HinfI	GANTC	7 cut(s)	227, 237, 244, 252, 381, 668, 932
HpaII	CCGG	9 cut(s)	210, 310, 516, 608, 625, 734, 882, 895, 940
HphI	GGTGA	6 cut(s)	6, 15, 187, 280, 295, 871
Hpy188I	TCNGA	7 cut(s)	52, 484, 560, 592, 676, 917, 961
Hpy188III	TCNNGA	3 cut(s)	241, 551, 845
Hpy99I	CGWCG	8 cut(s)	137, 237, 488, 529, 589, 592, 662, 725
HpyAV	CCTTC	3 cut(s)	85, 415, 694
HpyCH4III	ACNGT	2 cut(s)	130, 325
HpyCH4IV	ACGT	4 cut(s)	428, 449, 564, 587
HpyCH4V	TGCA	1 cut(s)	420
HpyF3I	CTNAG	3 cut(s)	57, 86, 205
HpySE526I	ACGT	4 cut(s)	428, 449, 564, 587
Hsp92I	GRCGYC	2 cut(s)	486, 587
Hsp92II	CATG	2 cut(s)	418, 499
HspAI	GCGC	4 cut(s)	339, 500, 519, 695
KroI	GCCGGC	1 cut(s)	515
KroNI	GCCGGC	1 cut(s)	517
Kzo9I	GATC	2 cut(s)	471, 555
LmnI	GCTCC	4 cut(s)	470, 605, 736, 924
Lsp1109I	GCAGC	5 cut(s)	281, 383, 508, 873, 900
LweI	GCATC	2 cut(s)	429, 604
MaeI	CTAG	2 cut(s)	767, 795
MaeII	ACGT	4 cut(s)	428, 449, 564, 587
MaeIII	GTNAC	3 cut(s)	124, 368, 845
MalI	GATC	2 cut(s)	473, 557
MbiI	CCGCTC	1 cut(s)	465
MboI	GATC	2 cut(s)	471, 555
MboII	GAAGA	5 cut(s)	277, 306, 663, 716, 831
MfeI	CAATTG	1 cut(s)	636
MhlI	GDGCHC	4 cut(s)	14, 495, 602, 833
MluCI	AATT	1 cut(s)	636
MlyI	GAGTC	6 cut(s)	236, 238, 261, 375, 677, 941
MmeI	TCCRAC	2 cut(s)	507, 570
MroNI	GCCGGC	1 cut(s)	515
MspA1I	CMGCKG	2 cut(s)	180, 537
MspI	CCGG	9 cut(s)	210, 310, 516, 608, 625, 734, 882, 895, 940
MspR9I	CCNGG	2 cut(s)	211, 941
MunI	CAATTG	1 cut(s)	636
MvnI	CGCG	1 cut(s)	232
NaeI	GCCGGC	1 cut(s)	517
NciI	CCSGG	2 cut(s)	211, 941
NdeII	GATC	2 cut(s)	471, 555
NgoMIV	GCCGGC	1 cut(s)	515
NlaIII	CATG	2 cut(s)	418, 499
NlaIV	GGNNCC	1 cut(s)	738
NmeAIII	GCCGAG	6 cut(s)	250, 275, 390, 514, 786, 799
NmuCI	GTSAC	3 cut(s)	124, 368, 845
NsbI	TGCGCA	1 cut(s)	696
PcsI	WCGNNNNNNNCGW	5 cut(s)	446, 480, 577, 654, 663
PdiI	GCCGGC	1 cut(s)	517
PfeI	GAWTC	1 cut(s)	237
Ple19I	CGATCG	1 cut(s)	474
PleI	GAGTC	6 cut(s)	235, 238, 260, 375, 676, 940
PmaCI	CACGTG	1 cut(s)	429
PmlI	CACGTG	1 cut(s)	429
PpsI	GAGTC	6 cut(s)	235, 238, 260, 375, 676, 940
Ppu21I	YACGTR	1 cut(s)	429
Psp124BI	GAGCTC	4 cut(s)	14, 495, 602, 833
PspCI	CACGTG	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	738
PspPI	GGNCC	1 cut(s)	627
PvuI	CGATCG	1 cut(s)	474
SacI	GAGCTC	4 cut(s)	14, 495, 602, 833
Sau3AI	GATC	2 cut(s)	471, 555
Sau96I	GGNCC	1 cut(s)	627
SchI	GAGTC	6 cut(s)	236, 238, 261, 375, 677, 941
ScrFI	CCNGG	2 cut(s)	211, 941
SduI	GDGCHC	4 cut(s)	14, 495, 602, 833
SfaNI	GCATC	2 cut(s)	429, 604
SinI	GGWCC	1 cut(s)	627
SpeI	ACTAGT	1 cut(s)	794
Sse9I	AATT	1 cut(s)	636
SspMI	CTAG	2 cut(s)	767, 795
SstI	GAGCTC	4 cut(s)	14, 495, 602, 833
StyD4I	CCNGG	2 cut(s)	209, 939
TaaI	ACNGT	2 cut(s)	130, 325
TaiI	ACGT	4 cut(s)	431, 452, 567, 590
TasI	AATT	1 cut(s)	636
TauI	GCSGC	8 cut(s)	180, 192, 465, 479, 576, 742, 773, 894
TfiI	GAWTC	1 cut(s)	237
TseFI	GTSAC	3 cut(s)	124, 368, 845
TseI	GCWGC	5 cut(s)	269, 396, 521, 861, 888
Tsp45I	GTSAC	3 cut(s)	124, 368, 845
TspDTI	ATGAA	2 cut(s)	545, 633
TspGWI	ACGGA	2 cut(s)	536, 959
VpaK11BI	GGWCC	1 cut(s)	627
XspI	CTAG	2 cut(s)	767, 795
ZraI	GACGTC	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.