Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005662

Physical Location & Seq

Genomic Coordinates Forward (+)

34632726 .. 34634321

Gene Structure 1596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G015540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTCTGGAGCACCGCCGCCACCGCCACCGCCATTATTAACCTCCACCACCTCGCCACCTCAAAACAACCGCTCATTGACCGTGAAAACCTTAAGTCCGAGCATTCTCATCATCCTCCTCATCGTCGTCGTCACCGTGGTGGCTTCATTTTCCCTCTGCCGAATCCTCCGCTGCATCAACAACCGCTTCCTCCGCCACGCCACTCCCTCCTCCGGCGACGACGCACCCGCTCGCGCCTCCAGCCGGCGAGTCTCTCCTGCCGAATCGGCCGCCGCCGATCCCGTCGCCGCGCTCCCGGTCTTCACCTTCTCCGCCATCAAGAACCGCCGAGCCTCCTCCACCGCCGTCGTCGCAGCCGACTGCGCCGTCTGCCTCTCGAAGTTCGAGCACGACGATCAGCTCCGGCTGCTCCCTCTCTGCTGTCACGCCTTCCACGTCTCGTGCATCGACACGTGGCTCCACTCCCAGCAGACCTGCCCGCTCTGCCGGTCGCCGATTTCCGCGTCCGACTCCGAGCTCATGACTCTCGTCGAGAATGCAGGCTCCTCCGCCCGAGGCGGCGGCGATAGCTTCCGGCTCGAGATTGGCAACGTCAGCCGCCGCCAAACAACCACGACGTCCAACTCCAGCGCGCGCCGCTCCTACTCCATCGGATCGTTTGACTACCTCGTGGACGACGACTCGGAGGTCCAATTGTCCAATGCCAGAAACGGCTCGTCTGATAGGAAAGAAGAGGTGATTGTCGTTCTCGGCGAGCCCCCGCCGCCGCCGCTGCCGTCGGAGGCCAGTCTAGCTGCTGACGTGGCCTCGGGAAGGAGCTGGCTCAAGGAATTCGTGGATAGACTCTCCAGCTCTTCTCGACGAAGCTCTGGCAGATTCTTTACAGGCAGTAGCCGTCGGAGTGAGATAGGCGGCACGGGAGAGTGGATATCGGAGTCCGGCCAAGTCGGCGTCGAGCTCTCCGAGTATTTCCGGTGGTTATCGGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

330

Amino Acids

35.4

Weight (kDa)

6.95

Isoelectric Point (pI)

73.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	120 - 163	8.6e-13	Ring finger domain
zf-RING_11	PF17123	120 - 149	8.5e-09	RING-like zinc finger
zf-rbx1	PF12678	130 - 163	3.3e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60220
fragaria_vesca	FvH4_7g08860
malus_domestica	MD02G1223200.v1.1 MD07G1091500.v1.1
prunus_persica	Prupe.2G116700_v2.0.a1
pyrus_communis	pycom07g07480 pycom15g32160
rosa_chinensis	RchiOBHm_Chr1g0344271 RchiOBHm_Chr7g0197351
rosa_laevigata	RLG00000003768 RLG00000015102 RLG00000019331 RLG00000025671 RLG00000028912
rosa_multiflora	Rmu_sc0000019.1_g000012 Rmu_sc0000338.1_g000018 Rmu_sc0003703.1_g000004 Rmu_sc0005991.1_g000007 Rmu_sc0016684.1_g000002 Rmu_sc0016685.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309960
rosa_rugosa	Rorug01G0172700
rosa_samantha	Rh1AG188600 Rh1BG155100 Rh1CG174400 Rh2CG262100 Rh3BG248600
rosa_wichuraiana	Rw1G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	365, 686
AatII	GACGTC	1 cut(s)	620
Acc36I	ACCTGC	1 cut(s)	482
AccBSI	CCGCTC	4 cut(s)	72, 230, 481, 639
AccII	CGCG	5 cut(s)	234, 290, 503, 632, 634
AclWI	GGATC	2 cut(s)	272, 661
AcoI	YGGCCR	2 cut(s)	267, 940
AcsI	RAATTY	1 cut(s)	830
AcvI	CACGTG	1 cut(s)	453
AcyI	GRCGYC	2 cut(s)	617, 951
AfiI	CCNNNNNNNGG	3 cut(s)	212, 243, 813
AflII	CTTAAG	1 cut(s)	91
AflIII	ACRYGT	1 cut(s)	450
AjiI	CACGTC	2 cut(s)	436, 802
AleI	CACNNNNGTG	1 cut(s)	137
AluBI	AGCT	8 cut(s)	400, 517, 570, 794, 819, 852, 867, 958
AluI	AGCT	8 cut(s)	400, 517, 570, 794, 819, 852, 867, 958
Alw21I	GWGCWC	4 cut(s)	13, 390, 519, 960
Alw26I	GTCTC	2 cut(s)	256, 442
AlwI	GGATC	2 cut(s)	272, 661
Ama87I	CYCGRG	3 cut(s)	552, 578, 808
AoxI	GGCC	4 cut(s)	267, 783, 804, 940
ApeKI	GCWGC	5 cut(s)	171, 353, 406, 772, 794
ApoI	RAATTY	1 cut(s)	830
AspLEI	GCGC	6 cut(s)	236, 292, 365, 632, 634, 636
AspS9I	GGNCC	1 cut(s)	688
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	3 cut(s)	124, 295, 748
AvaI	CYCGRG	3 cut(s)	552, 578, 808
AvaII	GGWCC	1 cut(s)	688
BanII	GRGCYC	3 cut(s)	519, 759, 960
BauI	CACGAG	2 cut(s)	439, 668
BbrPI	CACGTG	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	292
Bbv12I	GWGCWC	4 cut(s)	13, 390, 519, 960
BbvI	GCAGC	5 cut(s)	158, 365, 393, 759, 781
BccI	CCATC	2 cut(s)	323, 656
BceAI	ACGGC	5 cut(s)	329, 350, 727, 760, 879
BcnI	CCSGG	1 cut(s)	296
BcoDI	GTCTC	2 cut(s)	256, 442
BfaI	CTAG	1 cut(s)	791
BfrI	CTTAAG	1 cut(s)	91
BfuAI	ACCTGC	1 cut(s)	482
BglI	GCCNNNNNGGC	2 cut(s)	266, 948
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	1 cut(s)	688
BmeT110I	CYCGRG	3 cut(s)	552, 578, 808
BmgBI	CACGTC	2 cut(s)	436, 802
BmgT120I	GGNCC	1 cut(s)	688
BmiI	GGNNCC	2 cut(s)	458, 544
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	2 cut(s)	183, 453
BoxI	GACNNNNGTC	1 cut(s)	527
BpiI	GAAGAC	1 cut(s)	292
BpmI	CTGGAG	4 cut(s)	27, 223, 610, 832
BpuEI	CTTGAG	1 cut(s)	809
BpuMI	CCSGG	1 cut(s)	296
BsaAI	YACGTR	1 cut(s)	453
BsaHI	GRCGYC	2 cut(s)	617, 951
BsaJI	CCNNGG	3 cut(s)	135, 553, 807
BsaWI	WCCGGW	1 cut(s)	972
Bsc4I	CCNNNNNNNGG	3 cut(s)	212, 243, 813
Bse118I	RCCGGY	2 cut(s)	243, 486
Bse1I	ACTGG	1 cut(s)	786
BseDI	CCNNGG	3 cut(s)	135, 553, 807
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	3 cut(s)	212, 243, 813
BseNI	ACTGG	1 cut(s)	786
BsePI	GCGCGC	2 cut(s)	630, 632
BseRI	GAGGAG	4 cut(s)	107, 199, 325, 535
BseX3I	CGGCCG	1 cut(s)	267
BseXI	GCAGC	5 cut(s)	158, 365, 393, 759, 781
BseYI	CCCAGC	1 cut(s)	465
Bsh1236I	CGCG	5 cut(s)	234, 290, 503, 632, 634
Bsh1285I	CGRYCG	2 cut(s)	270, 491
BshFI	GGCC	4 cut(s)	269, 785, 806, 942
BsiEI	CGRYCG	2 cut(s)	270, 491
BsiHKAI	GWGCWC	4 cut(s)	13, 390, 519, 960
BsiHKCI	CYCGRG	3 cut(s)	552, 578, 808
BsiSI	CCGG	8 cut(s)	213, 244, 296, 403, 487, 574, 939, 973
BslI	CCNNNNNNNGG	3 cut(s)	212, 243, 813
BsmAI	GTCTC	2 cut(s)	256, 442
BsmBI	CGTCTC	1 cut(s)	442
BsmI	GAATGC	2 cut(s)	102, 541
BsnI	GGCC	4 cut(s)	269, 785, 806, 942
BsoBI	CYCGRG	3 cut(s)	552, 578, 808
Bsp1286I	GDGCHC	5 cut(s)	13, 390, 519, 759, 960
Bsp143I	GATC	3 cut(s)	277, 394, 653
BspANI	GGCC	4 cut(s)	269, 785, 806, 942
BspFNI	CGCG	5 cut(s)	234, 290, 503, 632, 634
BspHI	TCATGA	1 cut(s)	519
BspLI	GGNNCC	2 cut(s)	458, 544
BspMI	ACCTGC	1 cut(s)	482
BspPI	GGATC	2 cut(s)	272, 661
BspQI	GCTCTTC	1 cut(s)	859
BspTI	CTTAAG	1 cut(s)	91
BsrBI	CCGCTC	4 cut(s)	72, 230, 481, 639
BsrFI	RCCGGY	2 cut(s)	243, 486
BsrI	ACTGG	1 cut(s)	786
BssAI	RCCGGY	2 cut(s)	243, 486
BssECI	CCNNGG	3 cut(s)	135, 553, 807
BssHII	GCGCGC	2 cut(s)	630, 632
BssMI	GATC	3 cut(s)	277, 394, 653
BssNI	GRCGYC	2 cut(s)	617, 951
BssSI	CACGAG	2 cut(s)	439, 668
Bst2BI	CACGAG	2 cut(s)	439, 668
Bst4CI	ACNGT	2 cut(s)	82, 136
Bst6I	CTCTTC	2 cut(s)	726, 859
BstACI	GRCGYC	2 cut(s)	617, 951
BstAFI	CTTAAG	1 cut(s)	91
BstBAI	YACGTR	1 cut(s)	453
BstC8I	GCNNGC	8 cut(s)	232, 245, 479, 541, 632, 634, 755, 821
BstDSI	CCRYGG	1 cut(s)	135
BstENI	CCTNNNNNAGG	1 cut(s)	811
BstF5I	GGATG	1 cut(s)	111
BstFNI	CGCG	5 cut(s)	234, 290, 503, 632, 634
BstHHI	GCGC	6 cut(s)	236, 292, 365, 632, 634, 636
BstKTI	GATC	3 cut(s)	280, 397, 656
BstMAI	GTCTC	2 cut(s)	256, 442
BstMBI	GATC	3 cut(s)	277, 394, 653
BstMCI	CGRYCG	2 cut(s)	270, 491
BstPAI	GACNNNNGTC	1 cut(s)	527
BstSCI	CCNGG	1 cut(s)	294
BstUI	CGCG	5 cut(s)	234, 290, 503, 632, 634
BstV1I	GCAGC	5 cut(s)	158, 365, 393, 759, 781
BstV2I	GAAGAC	1 cut(s)	292
BstZI	CGGCCG	1 cut(s)	267
BsuRI	GGCC	4 cut(s)	269, 785, 806, 942
BtgI	CCRYGG	1 cut(s)	135
BtrI	CACGTC	2 cut(s)	436, 802
BtsCI	GGATG	1 cut(s)	111
BveI	ACCTGC	1 cut(s)	482
Cac8I	GCNNGC	8 cut(s)	232, 245, 479, 541, 632, 634, 755, 821
CciI	TCATGA	1 cut(s)	519
CfoI	GCGC	6 cut(s)	236, 292, 365, 632, 634, 636
Cfr10I	RCCGGY	2 cut(s)	243, 486
Cfr13I	GGNCC	1 cut(s)	688
CseI	GACGC	3 cut(s)	230, 492, 940
CviAII	CATG	1 cut(s)	520
DpnI	GATC	3 cut(s)	279, 396, 655
DpnII	GATC	3 cut(s)	277, 394, 653
DrdI	GACNNNNNNGTC	2 cut(s)	365, 686
DseDI	GACNNNNNNGTC	2 cut(s)	365, 686
EaeI	YGGCCR	2 cut(s)	267, 940
EagI	CGGCCG	1 cut(s)	267
Eam1104I	CTCTTC	2 cut(s)	726, 859
EarI	CTCTTC	2 cut(s)	726, 859
EciI	GGCGGA	3 cut(s)	182, 301, 538
Ecl136II	GAGCTC	2 cut(s)	517, 958
EclXI	CGGCCG	1 cut(s)	267
Eco24I	GRGCYC	3 cut(s)	519, 759, 960
Eco32I	GATATC	1 cut(s)	930
Eco47I	GGWCC	1 cut(s)	688
Eco52I	CGGCCG	1 cut(s)	267
Eco53kI	GAGCTC	2 cut(s)	517, 958
Eco72I	CACGTG	1 cut(s)	453
Eco88I	CYCGRG	3 cut(s)	552, 578, 808
EcoICRI	GAGCTC	2 cut(s)	517, 958
EcoNI	CCTNNNNNAGG	1 cut(s)	811
EcoRI	GAATTC	1 cut(s)	830
EcoRV	GATATC	1 cut(s)	930
EcoT38I	GRGCYC	3 cut(s)	519, 759, 960
Esp3I	CGTCTC	1 cut(s)	442
FaeI	CATG	1 cut(s)	523
FaiI	YATR	2 cut(s)	521, 991
FatI	CATG	1 cut(s)	519
FauI	CCCGC	3 cut(s)	235, 486, 768
FokI	GGATG	1 cut(s)	98
FriOI	GRGCYC	3 cut(s)	519, 759, 960
FspBI	CTAG	1 cut(s)	791
GlaI	GCGC	6 cut(s)	235, 291, 364, 631, 633, 635
GsaI	CCCAGC	1 cut(s)	469
GsuI	CTGGAG	4 cut(s)	27, 223, 610, 832
HaeIII	GGCC	4 cut(s)	269, 785, 806, 942
HapII	CCGG	8 cut(s)	213, 244, 296, 403, 487, 574, 939, 973
HgaI	GACGC	3 cut(s)	230, 492, 940
HhaI	GCGC	6 cut(s)	236, 292, 365, 632, 634, 636
Hin1I	GRCGYC	2 cut(s)	617, 951
Hin1II	CATG	1 cut(s)	523
Hin6I	GCGC	6 cut(s)	234, 290, 363, 630, 632, 634
HinP1I	GCGC	6 cut(s)	234, 290, 363, 630, 632, 634
HinfI	GANTC	9 cut(s)	162, 249, 263, 509, 523, 680, 843, 876, 935
HpaII	CCGG	8 cut(s)	213, 244, 296, 403, 487, 574, 939, 973
HphI	GGTGA	3 cut(s)	124, 295, 748
Hpy166II	GTNNAC	1 cut(s)	673
Hpy188III	TCNNGA	8 cut(s)	6, 319, 376, 520, 532, 580, 810, 858
Hpy8I	GTNNAC	1 cut(s)	673
HpyAV	CCTTC	3 cut(s)	316, 439, 807
HpyCH4III	ACNGT	2 cut(s)	82, 136
HpyCH4IV	ACGT	5 cut(s)	435, 452, 591, 617, 801
HpyCH4V	TGCA	3 cut(s)	174, 444, 539
HpySE526I	ACGT	5 cut(s)	435, 452, 591, 617, 801
Hsp92I	GRCGYC	2 cut(s)	617, 951
Hsp92II	CATG	1 cut(s)	523
HspAI	GCGC	6 cut(s)	234, 290, 363, 630, 632, 634
KroI	GCCGGC	1 cut(s)	243
KroNI	GCCGGC	1 cut(s)	245
Kzo9I	GATC	3 cut(s)	277, 394, 653
LguI	GCTCTTC	1 cut(s)	859
LmnI	GCTCC	8 cut(s)	8, 297, 405, 414, 462, 548, 644, 816
Lsp1109I	GCAGC	5 cut(s)	158, 365, 393, 759, 781
LweI	GCATC	2 cut(s)	183, 453
MaeI	CTAG	1 cut(s)	791
MaeII	ACGT	5 cut(s)	435, 452, 591, 617, 801
MaeIII	GTNAC	2 cut(s)	130, 422
MalI	GATC	3 cut(s)	279, 396, 655
MbiI	CCGCTC	4 cut(s)	72, 230, 481, 639
MboI	GATC	3 cut(s)	277, 394, 653
MboII	GAAGA	3 cut(s)	292, 743, 846
MfeI	CAATTG	1 cut(s)	692
MhlI	GDGCHC	5 cut(s)	13, 390, 519, 759, 960
MluCI	AATT	2 cut(s)	692, 830
MlyI	GAGTC	6 cut(s)	258, 503, 517, 674, 837, 944
MmeI	TCCRAC	4 cut(s)	531, 645, 759, 878
MroNI	GCCGGC	1 cut(s)	243
MseI	TTAA	2 cut(s)	38, 92
MslI	CAYNNNNRTG	1 cut(s)	137
MspA1I	CMGCKG	2 cut(s)	171, 772
MspCI	CTTAAG	1 cut(s)	91
MspI	CCGG	8 cut(s)	213, 244, 296, 403, 487, 574, 939, 973
MspR9I	CCNGG	1 cut(s)	296
MunI	CAATTG	1 cut(s)	692
Mva1269I	GAATGC	2 cut(s)	102, 541
MvnI	CGCG	5 cut(s)	234, 290, 503, 632, 634
NaeI	GCCGGC	1 cut(s)	245
NciI	CCSGG	1 cut(s)	296
NdeII	GATC	3 cut(s)	277, 394, 653
NgoMIV	GCCGGC	1 cut(s)	243
NlaIII	CATG	1 cut(s)	523
NlaIV	GGNNCC	2 cut(s)	458, 544
NmeAIII	GCCGAG	2 cut(s)	353, 729
NmuCI	GTSAC	2 cut(s)	130, 422
OliI	CACNNNNGTG	1 cut(s)	137
PaeR7I	CTCGAG	1 cut(s)	578
PagI	TCATGA	1 cut(s)	519
PauI	GCGCGC	2 cut(s)	630, 632
PciSI	GCTCTTC	1 cut(s)	859
PcsI	WCGNNNNNNNCGW	7 cut(s)	132, 354, 390, 432, 675, 750, 960
PctI	GAATGC	2 cut(s)	102, 541
PdiI	GCCGGC	1 cut(s)	245
PfeI	GAWTC	3 cut(s)	162, 263, 876
PleI	GAGTC	6 cut(s)	257, 503, 517, 674, 837, 943
PmaCI	CACGTG	1 cut(s)	453
PmlI	CACGTG	1 cut(s)	453
PpsI	GAGTC	6 cut(s)	257, 503, 517, 674, 837, 943
Ppu21I	YACGTR	1 cut(s)	453
PshAI	GACNNNNGTC	1 cut(s)	527
Psp124BI	GAGCTC	2 cut(s)	519, 960
PspCI	CACGTG	1 cut(s)	453
PspFI	CCCAGC	1 cut(s)	465
PspN4I	GGNNCC	2 cut(s)	458, 544
PspPI	GGNCC	1 cut(s)	688
PteI	GCGCGC	2 cut(s)	630, 632
RseI	CAYNNNNRTG	1 cut(s)	137
SacI	GAGCTC	2 cut(s)	519, 960
SapI	GCTCTTC	1 cut(s)	859
SaqAI	TTAA	2 cut(s)	38, 92
Sau3AI	GATC	3 cut(s)	277, 394, 653
Sau96I	GGNCC	1 cut(s)	688
SchI	GAGTC	6 cut(s)	258, 503, 517, 674, 837, 944
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	5 cut(s)	13, 390, 519, 759, 960
SfaNI	GCATC	2 cut(s)	183, 453
Sfr274I	CTCGAG	1 cut(s)	578
SinI	GGWCC	1 cut(s)	688
SlaI	CTCGAG	1 cut(s)	578
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	3 cut(s)	91, 578, 824
SmoI	CTYRAG	3 cut(s)	91, 578, 824
Sse9I	AATT	2 cut(s)	692, 830
SspMI	CTAG	1 cut(s)	791
SstI	GAGCTC	2 cut(s)	519, 960
StyD4I	CCNGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	82, 136
TaiI	ACGT	5 cut(s)	438, 455, 594, 620, 804
TaqI	TCGA	7 cut(s)	377, 384, 447, 531, 579, 859, 954
TasI	AATT	2 cut(s)	692, 830
TfiI	GAWTC	3 cut(s)	162, 263, 876
Tru1I	TTAA	2 cut(s)	38, 92
Tru9I	TTAA	2 cut(s)	38, 92
TseFI	GTSAC	2 cut(s)	130, 422
TseI	GCWGC	5 cut(s)	171, 353, 406, 772, 794
Tsp45I	GTSAC	2 cut(s)	130, 422
TspDTI	ATGAA	1 cut(s)	135
Vha464I	CTTAAG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	688
XagI	CCTNNNNNAGG	1 cut(s)	811
XapI	RAATTY	1 cut(s)	830
XhoI	CTCGAG	1 cut(s)	578
XspI	CTAG	1 cut(s)	791
ZraI	GACGTC	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.