Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000019.1

Orthogroup ID

OG0005662

Physical Location & Seq

Genomic Coordinates Forward (+)

57785 .. 58789

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000019.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atgtccggagcaccgccgccaccgccaccgccaccgccacctccattattaacctccaccatctcgccacctcaaaacaaccgctcattgaccgtgaaaaccttaagtccgagcattctcatcatcctcctcatcgtcgtcgtcaccgtggtggcttcattttccctctgccgaatcctccgctgcatcaacaaccgcttcctccgccacgccactacctcctccggcgacgactcatccgctcgcgcctccagccggcgagtctctcctgccgaatccgccgccgccgatcccgtcgccgctctcccggtcttcagcttctccgccatcaagaaccgccgagcctcctccaccgccgtcgtcgcagccgactgcgccgtctgcctctcgaagttcgagcacgacgatcagctccggctgctccctctctgctgtcacgccttccacgtatcgtgcatcgacacctggctccactcgcagcagacctgccctctctgccggtcgccgatttccgcgtccgactccgagctcatgactctcgtcgagaatgcaggctcctccgcccgaggcggcggcgatagcttccggctcgagattggcaacgtcagccgccgccaaacaaccacgacgtccaactccagcgcgcgccgctcctactccatcggatcgttcgactacctcgtggacgacgactcggaggtccaattatccaatgccagaaacggctcgtctgataggaaagaagaggtgattgtcgttctcggcgagcccccgccgccgccgctgccgtcggaggccagtctagctgctgacgtggcctcgggaaggagctggctcaaagaattcgtggatagactctccagctcttctcgacgaagctctggcagattctttacaggcagtagccgtcggagtgagataggcggcacgggagagtggatatcggagtccggccaagtcggcgtcgagctctccgagtatttccggtggttatcggaggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

334

Amino Acids

35.79

Weight (kDa)

6.95

Isoelectric Point (pI)

74.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60220
fragaria_vesca	FvH4_7g08860
malus_domestica	MD02G1223200.v1.1 MD07G1091500.v1.1
prunus_persica	Prupe.2G116700_v2.0.a1
pyrus_communis	pycom07g07480 pycom15g32160
rosa_chinensis	RchiOBHm_Chr1g0344271 RchiOBHm_Chr7g0197351
rosa_laevigata	RLG00000003768 RLG00000015102 RLG00000019331 RLG00000025671 RLG00000028912
rosa_multiflora	Rmu_sc0000019.1_g000012 Rmu_sc0000338.1_g000018 Rmu_sc0003703.1_g000004 Rmu_sc0005991.1_g000007 Rmu_sc0016684.1_g000002 Rmu_sc0016685.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309960
rosa_rugosa	Rorug01G0172700
rosa_samantha	Rh1AG188600 Rh1BG155100 Rh1CG174400 Rh2CG262100 Rh3BG248600
rosa_wichuraiana	Rw1G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	377, 698
AatII	GACGTC	1 cut(s)	632
Acc36I	ACCTGC	1 cut(s)	494
AccBSI	CCGCTC	4 cut(s)	84, 242, 302, 651
AccII	CGCG	4 cut(s)	246, 515, 644, 646
AccIII	TCCGGA	1 cut(s)	5
AclWI	GGATC	2 cut(s)	284, 673
AcoI	YGGCCR	1 cut(s)	952
AcsI	RAATTY	1 cut(s)	842
AcuI	CTGAAG	1 cut(s)	298
AcyI	GRCGYC	2 cut(s)	629, 963
AfiI	CCNNNNNNNGG	2 cut(s)	255, 825
AflII	CTTAAG	1 cut(s)	103
AjiI	CACGTC	1 cut(s)	814
AjnI	CCWGG	1 cut(s)	464
AleI	CACNNNNGTG	1 cut(s)	149
AluBI	AGCT	9 cut(s)	318, 412, 529, 582, 806, 831, 864, 879, 970
AluI	AGCT	9 cut(s)	318, 412, 529, 582, 806, 831, 864, 879, 970
Alw21I	GWGCWC	4 cut(s)	13, 402, 531, 972
Alw26I	GTCTC	1 cut(s)	268
AlwI	GGATC	2 cut(s)	284, 673
Ama87I	CYCGRG	3 cut(s)	564, 590, 820
Aor13HI	TCCGGA	1 cut(s)	5
AoxI	GGCC	3 cut(s)	795, 816, 952
ApeKI	GCWGC	6 cut(s)	183, 365, 418, 478, 784, 806
ApoI	RAATTY	1 cut(s)	842
AspLEI	GCGC	5 cut(s)	248, 377, 644, 646, 648
AspS9I	GGNCC	1 cut(s)	700
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	2 cut(s)	136, 760
AvaI	CYCGRG	3 cut(s)	564, 590, 820
AvaII	GGWCC	1 cut(s)	700
BanII	GRGCYC	3 cut(s)	531, 771, 972
BauI	CACGAG	1 cut(s)	680
BbsI	GAAGAC	1 cut(s)	304
Bbv12I	GWGCWC	4 cut(s)	13, 402, 531, 972
BbvI	GCAGC	6 cut(s)	170, 377, 405, 490, 771, 793
BccI	CCATC	3 cut(s)	68, 335, 668
BceAI	ACGGC	5 cut(s)	341, 362, 739, 772, 891
BciT130I	CCWGG	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	268
BfaI	CTAG	1 cut(s)	803
BfrI	CTTAAG	1 cut(s)	103
BfuAI	ACCTGC	1 cut(s)	494
BglI	GCCNNNNNGGC	1 cut(s)	960
Bme1390I	CCNGG	2 cut(s)	308, 466
Bme18I	GGWCC	1 cut(s)	700
BmeT110I	CYCGRG	3 cut(s)	564, 590, 820
BmgBI	CACGTC	1 cut(s)	814
BmgT120I	GGNCC	1 cut(s)	700
BmiI	GGNNCC	2 cut(s)	470, 556
BmrFI	CCNGG	2 cut(s)	308, 466
BmsI	GCATC	2 cut(s)	195, 465
BoxI	GACNNNNGTC	1 cut(s)	539
BpiI	GAAGAC	1 cut(s)	304
BpmI	CTGGAG	3 cut(s)	235, 622, 844
BpuMI	CCSGG	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	448
BsaHI	GRCGYC	2 cut(s)	629, 963
BsaJI	CCNNGG	3 cut(s)	147, 565, 819
BsaWI	WCCGGW	2 cut(s)	5, 984
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 825
Bse118I	RCCGGY	2 cut(s)	255, 498
Bse1I	ACTGG	1 cut(s)	798
BseAI	TCCGGA	1 cut(s)	5
BseBI	CCWGG	1 cut(s)	466
BseDI	CCNNGG	3 cut(s)	147, 565, 819
BseGI	GGATG	2 cut(s)	123, 236
BseLI	CCNNNNNNNGG	2 cut(s)	255, 825
BseNI	ACTGG	1 cut(s)	798
BsePI	GCGCGC	2 cut(s)	642, 644
BseRI	GAGGAG	4 cut(s)	119, 211, 337, 547
BseXI	GCAGC	6 cut(s)	170, 377, 405, 490, 771, 793
Bsh1236I	CGCG	4 cut(s)	246, 515, 644, 646
Bsh1285I	CGRYCG	1 cut(s)	503
BshFI	GGCC	3 cut(s)	797, 818, 954
BsiEI	CGRYCG	1 cut(s)	503
BsiHKAI	GWGCWC	4 cut(s)	13, 402, 531, 972
BsiHKCI	CYCGRG	3 cut(s)	564, 590, 820
BsiSI	CCGG	9 cut(s)	6, 225, 256, 308, 415, 499, 586, 951, 985
BslI	CCNNNNNNNGG	2 cut(s)	255, 825
BsmAI	GTCTC	1 cut(s)	268
BsmI	GAATGC	2 cut(s)	114, 553
BsnI	GGCC	3 cut(s)	797, 818, 954
BsoBI	CYCGRG	3 cut(s)	564, 590, 820
Bsp1286I	GDGCHC	5 cut(s)	13, 402, 531, 771, 972
Bsp13I	TCCGGA	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	289, 406, 665
BspANI	GGCC	3 cut(s)	797, 818, 954
BspEI	TCCGGA	1 cut(s)	5
BspFNI	CGCG	4 cut(s)	246, 515, 644, 646
BspHI	TCATGA	1 cut(s)	531
BspLI	GGNNCC	2 cut(s)	470, 556
BspMI	ACCTGC	1 cut(s)	494
BspPI	GGATC	2 cut(s)	284, 673
BspQI	GCTCTTC	1 cut(s)	871
BspTI	CTTAAG	1 cut(s)	103
BsrBI	CCGCTC	4 cut(s)	84, 242, 302, 651
BsrFI	RCCGGY	2 cut(s)	255, 498
BsrI	ACTGG	1 cut(s)	798
BssAI	RCCGGY	2 cut(s)	255, 498
BssECI	CCNNGG	3 cut(s)	147, 565, 819
BssHII	GCGCGC	2 cut(s)	642, 644
BssMI	GATC	3 cut(s)	289, 406, 665
BssNI	GRCGYC	2 cut(s)	629, 963
BssSI	CACGAG	1 cut(s)	680
Bst2BI	CACGAG	1 cut(s)	680
Bst2UI	CCWGG	1 cut(s)	466
Bst4CI	ACNGT	2 cut(s)	94, 148
Bst6I	CTCTTC	2 cut(s)	738, 871
BstACI	GRCGYC	2 cut(s)	629, 963
BstAFI	CTTAAG	1 cut(s)	103
BstBAI	YACGTR	1 cut(s)	448
BstC8I	GCNNGC	7 cut(s)	244, 257, 553, 644, 646, 767, 833
BstDSI	CCRYGG	1 cut(s)	147
BstENI	CCTNNNNNAGG	1 cut(s)	823
BstF5I	GGATG	2 cut(s)	123, 236
BstFNI	CGCG	4 cut(s)	246, 515, 644, 646
BstHHI	GCGC	5 cut(s)	248, 377, 644, 646, 648
BstKTI	GATC	3 cut(s)	292, 409, 668
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	3 cut(s)	289, 406, 665
BstMCI	CGRYCG	1 cut(s)	503
BstNI	CCWGG	1 cut(s)	466
BstPAI	GACNNNNGTC	1 cut(s)	539
BstSCI	CCNGG	2 cut(s)	306, 464
BstUI	CGCG	4 cut(s)	246, 515, 644, 646
BstV1I	GCAGC	6 cut(s)	170, 377, 405, 490, 771, 793
BstV2I	GAAGAC	1 cut(s)	304
BsuRI	GGCC	3 cut(s)	797, 818, 954
BtgI	CCRYGG	1 cut(s)	147
BtrI	CACGTC	1 cut(s)	814
BtsCI	GGATG	2 cut(s)	123, 236
BveI	ACCTGC	1 cut(s)	494
Cac8I	GCNNGC	7 cut(s)	244, 257, 553, 644, 646, 767, 833
CciI	TCATGA	1 cut(s)	531
CfoI	GCGC	5 cut(s)	248, 377, 644, 646, 648
Cfr10I	RCCGGY	2 cut(s)	255, 498
Cfr13I	GGNCC	1 cut(s)	700
CseI	GACGC	2 cut(s)	504, 952
CviAII	CATG	1 cut(s)	532
DpnI	GATC	3 cut(s)	291, 408, 667
DpnII	GATC	3 cut(s)	289, 406, 665
DrdI	GACNNNNNNGTC	2 cut(s)	377, 698
DseDI	GACNNNNNNGTC	2 cut(s)	377, 698
EaeI	YGGCCR	1 cut(s)	952
Eam1104I	CTCTTC	2 cut(s)	738, 871
EarI	CTCTTC	2 cut(s)	738, 871
EciI	GGCGGA	4 cut(s)	194, 268, 313, 550
Ecl136II	GAGCTC	2 cut(s)	529, 970
Eco24I	GRGCYC	3 cut(s)	531, 771, 972
Eco32I	GATATC	1 cut(s)	942
Eco47I	GGWCC	1 cut(s)	700
Eco53kI	GAGCTC	2 cut(s)	529, 970
Eco57I	CTGAAG	1 cut(s)	298
Eco88I	CYCGRG	3 cut(s)	564, 590, 820
EcoICRI	GAGCTC	2 cut(s)	529, 970
EcoNI	CCTNNNNNAGG	1 cut(s)	823
EcoRI	GAATTC	1 cut(s)	842
EcoRII	CCWGG	1 cut(s)	464
EcoRV	GATATC	1 cut(s)	942
EcoT38I	GRGCYC	3 cut(s)	531, 771, 972
FaeI	CATG	1 cut(s)	535
FaiI	YATR	2 cut(s)	533, 1003
FatI	CATG	1 cut(s)	531
FauI	CCCGC	1 cut(s)	780
FokI	GGATG	2 cut(s)	110, 223
FriOI	GRGCYC	3 cut(s)	531, 771, 972
FspBI	CTAG	1 cut(s)	803
GlaI	GCGC	5 cut(s)	247, 376, 643, 645, 647
GsuI	CTGGAG	3 cut(s)	235, 622, 844
HaeIII	GGCC	3 cut(s)	797, 818, 954
HapII	CCGG	9 cut(s)	6, 225, 256, 308, 415, 499, 586, 951, 985
HgaI	GACGC	2 cut(s)	504, 952
HhaI	GCGC	5 cut(s)	248, 377, 644, 646, 648
Hin1I	GRCGYC	2 cut(s)	629, 963
Hin1II	CATG	1 cut(s)	535
Hin6I	GCGC	5 cut(s)	246, 375, 642, 644, 646
HinP1I	GCGC	5 cut(s)	246, 375, 642, 644, 646
HpaII	CCGG	9 cut(s)	6, 225, 256, 308, 415, 499, 586, 951, 985
HphI	GGTGA	2 cut(s)	136, 760
Hpy166II	GTNNAC	1 cut(s)	685
Hpy188III	TCNNGA	8 cut(s)	6, 331, 388, 532, 544, 592, 822, 870
Hpy8I	GTNNAC	1 cut(s)	685
HpyAV	CCTTC	2 cut(s)	451, 819
HpyCH4III	ACNGT	2 cut(s)	94, 148
HpyCH4IV	ACGT	4 cut(s)	447, 603, 629, 813
HpyCH4V	TGCA	3 cut(s)	186, 456, 551
HpySE526I	ACGT	4 cut(s)	447, 603, 629, 813
Hsp92I	GRCGYC	2 cut(s)	629, 963
Hsp92II	CATG	1 cut(s)	535
HspAI	GCGC	5 cut(s)	246, 375, 642, 644, 646
Kpn2I	TCCGGA	1 cut(s)	5
KroI	GCCGGC	1 cut(s)	255
KroNI	GCCGGC	1 cut(s)	257
Kzo9I	GATC	3 cut(s)	289, 406, 665
LguI	GCTCTTC	1 cut(s)	871
LmnI	GCTCC	7 cut(s)	8, 417, 426, 474, 560, 656, 828
Lsp1109I	GCAGC	6 cut(s)	170, 377, 405, 490, 771, 793
LweI	GCATC	2 cut(s)	195, 465
MaeI	CTAG	1 cut(s)	803
MaeII	ACGT	4 cut(s)	447, 603, 629, 813
MaeIII	GTNAC	2 cut(s)	142, 434
MalI	GATC	3 cut(s)	291, 408, 667
MbiI	CCGCTC	4 cut(s)	84, 242, 302, 651
MboI	GATC	3 cut(s)	289, 406, 665
MboII	GAAGA	3 cut(s)	304, 755, 858
MhlI	GDGCHC	5 cut(s)	13, 402, 531, 771, 972
MluCI	AATT	2 cut(s)	704, 842
MlyI	GAGTC	7 cut(s)	227, 270, 515, 529, 686, 849, 956
MmeI	TCCRAC	4 cut(s)	543, 657, 771, 890
MroI	TCCGGA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	255
MseI	TTAA	2 cut(s)	50, 104
MslI	CAYNNNNRTG	1 cut(s)	149
MspA1I	CMGCKG	2 cut(s)	183, 784
MspCI	CTTAAG	1 cut(s)	103
MspI	CCGG	9 cut(s)	6, 225, 256, 308, 415, 499, 586, 951, 985
MspR9I	CCNGG	2 cut(s)	308, 466
Mva1269I	GAATGC	2 cut(s)	114, 553
MvaI	CCWGG	1 cut(s)	466
MvnI	CGCG	4 cut(s)	246, 515, 644, 646
NaeI	GCCGGC	1 cut(s)	257
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	3 cut(s)	289, 406, 665
NgoMIV	GCCGGC	1 cut(s)	255
NlaIII	CATG	1 cut(s)	535
NlaIV	GGNNCC	2 cut(s)	470, 556
NmeAIII	GCCGAG	2 cut(s)	365, 741
NmuCI	GTSAC	2 cut(s)	142, 434
OliI	CACNNNNGTG	1 cut(s)	149
PaeR7I	CTCGAG	1 cut(s)	590
PagI	TCATGA	1 cut(s)	531
PauI	GCGCGC	2 cut(s)	642, 644
PciSI	GCTCTTC	1 cut(s)	871
PcsI	WCGNNNNNNNCGW	9 cut(s)	144, 366, 402, 444, 669, 678, 687, 762, 972
PctI	GAATGC	2 cut(s)	114, 553
PdiI	GCCGGC	1 cut(s)	257
PfeI	GAWTC	3 cut(s)	174, 275, 888
PleI	GAGTC	7 cut(s)	227, 269, 515, 529, 686, 849, 955
PpsI	GAGTC	7 cut(s)	227, 269, 515, 529, 686, 849, 955
Ppu21I	YACGTR	1 cut(s)	448
PshAI	GACNNNNGTC	1 cut(s)	539
Psp124BI	GAGCTC	2 cut(s)	531, 972
Psp6I	CCWGG	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	464
PspN4I	GGNNCC	2 cut(s)	470, 556
PspPI	GGNCC	1 cut(s)	700
PteI	GCGCGC	2 cut(s)	642, 644
RseI	CAYNNNNRTG	1 cut(s)	149
SacI	GAGCTC	2 cut(s)	531, 972
SapI	GCTCTTC	1 cut(s)	871
SaqAI	TTAA	2 cut(s)	50, 104
Sau3AI	GATC	3 cut(s)	289, 406, 665
Sau96I	GGNCC	1 cut(s)	700
SchI	GAGTC	7 cut(s)	227, 270, 515, 529, 686, 849, 956
ScrFI	CCNGG	2 cut(s)	308, 466
SduI	GDGCHC	5 cut(s)	13, 402, 531, 771, 972
SfaNI	GCATC	2 cut(s)	195, 465
Sfr274I	CTCGAG	1 cut(s)	590
SinI	GGWCC	1 cut(s)	700
SlaI	CTCGAG	1 cut(s)	590
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	2 cut(s)	103, 590
SmoI	CTYRAG	2 cut(s)	103, 590
Sse9I	AATT	2 cut(s)	704, 842
SspMI	CTAG	1 cut(s)	803
SstI	GAGCTC	2 cut(s)	531, 972
StyD4I	CCNGG	2 cut(s)	306, 464
TaaI	ACNGT	2 cut(s)	94, 148
TaiI	ACGT	4 cut(s)	450, 606, 632, 816
TaqI	TCGA	8 cut(s)	389, 396, 459, 543, 591, 672, 871, 966
TasI	AATT	2 cut(s)	704, 842
TfiI	GAWTC	3 cut(s)	174, 275, 888
Tru1I	TTAA	2 cut(s)	50, 104
Tru9I	TTAA	2 cut(s)	50, 104
TseFI	GTSAC	2 cut(s)	142, 434
TseI	GCWGC	6 cut(s)	183, 365, 418, 478, 784, 806
Tsp45I	GTSAC	2 cut(s)	142, 434
TspDTI	ATGAA	1 cut(s)	147
Vha464I	CTTAAG	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	700
XagI	CCTNNNNNAGG	1 cut(s)	823
XapI	RAATTY	1 cut(s)	842
XhoI	CTCGAG	1 cut(s)	590
XspI	CTAG	1 cut(s)	803
ZraI	GACGTC	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.