Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002449

Physical Location & Seq

Genomic Coordinates Reverse (-)

22650159 .. 22651636

Gene Structure 1478 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G61190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGATATATTTTGGTAGATCAATCGACAATCATTATACAACAATGATGACAAAAACATTGGAGATTGATTTGAGATCAGCAGAAGGGCTTAAGCTAAACCGGAGACCCATCAAGAAAAAGACTTTCGCCGTCGTAAAAATCGACGAGAAATGTCGAAAATCTAATCTTGACGAATCGAGAAGAAGCAATCCTACATGGAACTATAAATCAGAGATGCCCATCAATGGTAATGAACAGTTTATCTTCATTGAGGTATTTTATCGAACAGGTTCTGGGCATGATAAAAAAATCGGAGAAGCTAAAATCCCAACGAATGATTTCATGGGAAGGTATTCACCTGAAGGTCACTTAAACTTCTTGAGCTATAGATTGAGAGATGAGTTTGGTGATAAGTGTGGGATCGTCAATCTTTCGATTTTGGTTAAATCGGATCCCACCAGAGATTACGGCGCGTGTTCGTCCCAAGCGGCGGTTACTGGTTTGTGGAGGCCGAGATTAGAGACGGCATCGATTGATGGATACGGTGGCCGGACTGTTACCGGAGTTCCGGTTTGGGGTCTGTATCAACGCCAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009408 GO:0009409 GO:0009611 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0019725 GO:0031347 GO:0031348 GO:0042221 GO:0042493 GO:0042592 GO:0043167 GO:0043168 GO:0046677 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0065007 GO:0065008 GO:0080134 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

192

Amino Acids

21.99

Weight (kDa)

9.42

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	19 - 111	4.2e-10	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45760 AT3G61190 AT3G61190
fragaria_vesca	FvH4_7g13400 FvH4_7g13410
malus_domestica	MD01G1049300.v1.1 MD01G1049600.v1.1 MD07G1126300.v1.1 MD07G1126400.v1.1 MD07G1126500.v1.1 MD07G1126600.v1.1
prunus_persica	Prupe.2G157300_v2.0.a1 Prupe.2G157400_v2.0.a1
pyrus_communis	pycom01g07440 pycom01g07460 pycom07g12070 pycom07g12110 pycom07g12220
rosa_chinensis	RchiOBHm_Chr1g0352721 RchiOBHm_Chr1g0352731 RchiOBHm_Chr1g0352741
rosa_laevigata	RLG00000028315 RLG00000028316
rosa_multiflora	Rmu_sc0006445.1_g000002 Rmu_sc0006445.1_g000003 Rmu_sc0006445.1_g000006
rosa_roxburghii	Rroxscaffold_4G00302390 Rroxscaffold_4G00302410
rosa_rugosa	Rorug01G0231500 Rorug01G0231600
rosa_samantha	Rh1AG244500 Rh1AG244600 Rh1AG244800 Rh1BG215300 Rh1BG215400 Rh1BG215500 Rh1CG228300 Rh1CG228600 Rh1DG241300 Rh1DG241400 Rh1DG241500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	452
AciI	CCGC	2 cut(s)	467, 470
AclWI	GGATC	3 cut(s)	407, 425, 438
AcoI	YGGCCR	1 cut(s)	526
AcuI	CTGAAG	1 cut(s)	360
AfiI	CCNNNNNNNGG	3 cut(s)	224, 469, 554
AflII	CTTAAG	1 cut(s)	89
AluBI	AGCT	3 cut(s)	94, 299, 363
AluI	AGCT	3 cut(s)	94, 299, 363
Alw26I	GTCTC	2 cut(s)	97, 494
AlwI	GGATC	3 cut(s)	407, 425, 438
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	2 cut(s)	488, 526
Asp700I	GAANNNNTTC	3 cut(s)	268, 317, 331
AspLEI	GCGC	1 cut(s)	452
AsuHPI	GGTGA	2 cut(s)	327, 398
BamHI	GGATCC	1 cut(s)	430
BarI	GAAGNNNNNNTAC	2 cut(s)	175, 207
BccI	CCATC	3 cut(s)	116, 227, 509
BceAI	ACGGC	3 cut(s)	113, 463, 519
BciVI	GTATCC	1 cut(s)	512
BcoDI	GTCTC	2 cut(s)	97, 494
BfmI	CTRYAG	1 cut(s)	364
BfrI	CTTAAG	1 cut(s)	89
BfuI	GTATCC	1 cut(s)	512
BisI	GCNGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	469
BmiI	GGNNCC	1 cut(s)	432
BmsI	GCATC	2 cut(s)	204, 515
BpuEI	CTTGAG	1 cut(s)	379
Bsa29I	ATCGAT	1 cut(s)	509
BsaBI	GATNNNNATC	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	97
BsaWI	WCCGGW	3 cut(s)	99, 539, 547
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 469, 554
Bse1I	ACTGG	1 cut(s)	481
Bse8I	GATNNNNATC	1 cut(s)	218
BseCI	ATCGAT	1 cut(s)	509
BseJI	GATNNNNATC	1 cut(s)	218
BseLI	CCNNNNNNNGG	3 cut(s)	224, 469, 554
BseNI	ACTGG	1 cut(s)	481
Bsh1236I	CGCG	1 cut(s)	452
BshFI	GGCC	2 cut(s)	490, 528
BshVI	ATCGAT	1 cut(s)	509
BsiSI	CCGG	4 cut(s)	100, 529, 540, 548
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	3 cut(s)	224, 469, 554
BsmAI	GTCTC	2 cut(s)	97, 494
BsmBI	CGTCTC	1 cut(s)	494
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	2 cut(s)	490, 528
Bso31I	GGTCTC	1 cut(s)	97
Bsp143I	GATC	4 cut(s)	17, 74, 399, 430
BspACI	CCGC	2 cut(s)	467, 470
BspANI	GGCC	2 cut(s)	490, 528
BspDI	ATCGAT	1 cut(s)	509
BspFNI	CGCG	1 cut(s)	452
BspLI	GGNNCC	1 cut(s)	432
BspPI	GGATC	3 cut(s)	407, 425, 438
BspTI	CTTAAG	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	481
BssMI	GATC	4 cut(s)	17, 74, 399, 430
Bst4CI	ACNGT	3 cut(s)	237, 524, 535
BstAFI	CTTAAG	1 cut(s)	89
BstFNI	CGCG	1 cut(s)	452
BstHHI	GCGC	1 cut(s)	452
BstKTI	GATC	4 cut(s)	20, 77, 402, 433
BstMAI	GTCTC	2 cut(s)	97, 494
BstMBI	GATC	4 cut(s)	17, 74, 399, 430
BstSFI	CTRYAG	1 cut(s)	364
BstUI	CGCG	1 cut(s)	452
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
Bsu15I	ATCGAT	1 cut(s)	509
BsuI	GTATCC	1 cut(s)	512
BsuRI	GGCC	2 cut(s)	490, 528
BsuTUI	ATCGAT	1 cut(s)	509
CaiI	CAGNNNCTG	1 cut(s)	272
CfoI	GCGC	1 cut(s)	452
ClaI	ATCGAT	1 cut(s)	509
CviAII	CATG	3 cut(s)	195, 278, 322
CviJI	RGCY	6 cut(s)	88, 94, 299, 363, 490, 528
CviKI_1	RGCY	6 cut(s)	88, 94, 299, 363, 490, 528
DpnI	GATC	4 cut(s)	19, 76, 401, 432
DpnII	GATC	4 cut(s)	17, 74, 399, 430
EaeI	YGGCCR	1 cut(s)	526
Eco31I	GGTCTC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	360
Esp3I	CGTCTC	1 cut(s)	494
FaeI	CATG	3 cut(s)	198, 281, 325
FaiI	YATR	7 cut(s)	7, 36, 196, 204, 279, 323, 366
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	3 cut(s)	194, 277, 321
Fnu4HI	GCNGC	1 cut(s)	468
Fsp4HI	GCNGC	1 cut(s)	468
GlaI	GCGC	1 cut(s)	451
GluI	GCNGC	1 cut(s)	468
HaeIII	GGCC	2 cut(s)	490, 528
HapII	CCGG	4 cut(s)	100, 529, 540, 548
HhaI	GCGC	1 cut(s)	452
Hin1II	CATG	3 cut(s)	198, 281, 325
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	4 cut(s)	100, 529, 540, 548
HphI	GGTGA	2 cut(s)	327, 398
Hpy188I	TCNGA	3 cut(s)	211, 293, 430
Hpy188III	TCNNGA	4 cut(s)	112, 167, 177, 358
Hpy99I	CGWCG	2 cut(s)	134, 146
HpyAV	CCTTC	3 cut(s)	77, 321, 335
HpyCH4III	ACNGT	3 cut(s)	237, 524, 535
Hsp92II	CATG	3 cut(s)	198, 281, 325
HspAI	GCGC	1 cut(s)	450
Kzo9I	GATC	4 cut(s)	17, 74, 399, 430
LpnPI	CCDG	9 cut(s)	113, 252, 258, 351, 451, 462, 542, 553, 561
LweI	GCATC	2 cut(s)	204, 515
MaeIII	GTNAC	3 cut(s)	344, 472, 535
MalI	GATC	4 cut(s)	19, 76, 401, 432
MboI	GATC	4 cut(s)	17, 74, 399, 430
MboII	GAAGA	2 cut(s)	192, 235
MflI	RGATCY	1 cut(s)	430
MluCI	AATT	1 cut(s)	572
MnlI	CCTC	2 cut(s)	244, 480
MroXI	GAANNNNTTC	3 cut(s)	268, 317, 331
MseI	TTAA	4 cut(s)	90, 350, 423, 577
MspCI	CTTAAG	1 cut(s)	89
MspI	CCGG	4 cut(s)	100, 529, 540, 548
MvnI	CGCG	1 cut(s)	452
NdeII	GATC	4 cut(s)	17, 74, 399, 430
NlaIII	CATG	3 cut(s)	198, 281, 325
NlaIV	GGNNCC	1 cut(s)	432
NmeAIII	GCCGAG	1 cut(s)	516
NmuCI	GTSAC	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PdmI	GAANNNNTTC	3 cut(s)	268, 317, 331
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	469
PspN4I	GGNNCC	1 cut(s)	432
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	430
SaqAI	TTAA	4 cut(s)	90, 350, 423, 577
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	4 cut(s)	17, 74, 399, 430
SetI	ASST	8 cut(s)	96, 255, 271, 301, 332, 340, 346, 365
SfaNI	GCATC	2 cut(s)	204, 515
SfcI	CTRYAG	1 cut(s)	364
SmlI	CTYRAG	2 cut(s)	89, 358
SmoI	CTYRAG	2 cut(s)	89, 358
Sse9I	AATT	1 cut(s)	572
SsiI	CCGC	2 cut(s)	467, 470
TaaI	ACNGT	3 cut(s)	237, 524, 535
TaqI	TCGA	7 cut(s)	24, 141, 154, 176, 262, 413, 509
TasI	AATT	1 cut(s)	572
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	4 cut(s)	90, 350, 423, 577
Tru9I	TTAA	4 cut(s)	90, 350, 423, 577
TseFI	GTSAC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	3 cut(s)	235, 246, 310
Vha464I	CTTAAG	1 cut(s)	89
XmnI	GAANNNNTTC	3 cut(s)	268, 317, 331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.