Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002449

Physical Location & Seq

Genomic Coordinates Reverse (-)

33541898 .. 33543800

Gene Structure 1903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG215300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGAAAGAAACTCTTCAGGTGGACGAAGGTGCGACGTCGATGTATGCGAGGAAGTTGTCGAGTGGTTGCGCTACGACGTCGTCGCAGACTAGGTTGGGCTATCCGGCAGTGGATAACAGTGGCGTTGTAACTGGGGTTCCGTGTAGAGTTGGGTTGCGGTTCATTCAACATTACAACGAGCTTACATTACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

64

Amino Acids

6.95

Weight (kDa)

7.83

Isoelectric Point (pI)

34.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45760 AT3G61190 AT3G61190
fragaria_vesca	FvH4_7g13400 FvH4_7g13410
malus_domestica	MD01G1049300.v1.1 MD01G1049600.v1.1 MD07G1126300.v1.1 MD07G1126400.v1.1 MD07G1126500.v1.1 MD07G1126600.v1.1
prunus_persica	Prupe.2G157300_v2.0.a1 Prupe.2G157400_v2.0.a1
pyrus_communis	pycom01g07440 pycom01g07460 pycom07g12070 pycom07g12110 pycom07g12220
rosa_chinensis	RchiOBHm_Chr1g0352721 RchiOBHm_Chr1g0352731 RchiOBHm_Chr1g0352741
rosa_laevigata	RLG00000028315 RLG00000028316
rosa_multiflora	Rmu_sc0006445.1_g000002 Rmu_sc0006445.1_g000003 Rmu_sc0006445.1_g000006
rosa_roxburghii	Rroxscaffold_4G00302390 Rroxscaffold_4G00302410
rosa_rugosa	Rorug01G0231500 Rorug01G0231600
rosa_samantha	Rh1AG244500 Rh1AG244600 Rh1AG244800 Rh1BG215300 Rh1BG215400 Rh1BG215500 Rh1CG228300 Rh1CG228600 Rh1DG241300 Rh1DG241400 Rh1DG241500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	38, 80
AciI	CCGC	1 cut(s)	157
AcyI	GRCGYC	2 cut(s)	35, 77
AgsI	TTSAA	1 cut(s)	167
AluBI	AGCT	1 cut(s)	181
AluI	AGCT	1 cut(s)	181
Asp700I	GAANNNNTTC	1 cut(s)	12
AspLEI	GCGC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	90
BmiI	GGNNCC	1 cut(s)	138
BmrI	ACTGGG	1 cut(s)	141
BmuI	ACTGGG	1 cut(s)	141
BsaHI	GRCGYC	2 cut(s)	35, 77
Bse1I	ACTGG	1 cut(s)	136
BseNI	ACTGG	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	104
BspACI	CCGC	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	136
BssNI	GRCGYC	2 cut(s)	35, 77
Bst4CI	ACNGT	1 cut(s)	119
Bst6I	CTCTTC	1 cut(s)	18
BstACI	GRCGYC	2 cut(s)	35, 77
BstHHI	GCGC	1 cut(s)	71
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	114, 124
CfoI	GCGC	1 cut(s)	71
CviJI	RGCY	2 cut(s)	99, 181
CviKI_1	RGCY	2 cut(s)	99, 181
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
FaiI	YATR	1 cut(s)	45
FalI	AAGNNNNNCTT	1 cut(s)	29
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	1 cut(s)	70
HapII	CCGG	1 cut(s)	104
HhaI	GCGC	1 cut(s)	71
Hin1I	GRCGYC	2 cut(s)	35, 77
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HpaII	CCGG	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	22
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	5 cut(s)	37, 40, 79, 82, 85
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4IV	ACGT	2 cut(s)	35, 77
HpySE526I	ACGT	2 cut(s)	35, 77
Hsp92I	GRCGYC	2 cut(s)	35, 77
HspAI	GCGC	1 cut(s)	69
LpnPI	CCDG	3 cut(s)	2, 117, 117
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	2 cut(s)	35, 77
MaeIII	GTNAC	1 cut(s)	127
MboII	GAAGA	1 cut(s)	5
MnlI	CCTC	1 cut(s)	42
MroXI	GAANNNNTTC	1 cut(s)	12
MseI	TTAA	1 cut(s)	193
MspI	CCGG	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PdmI	GAANNNNTTC	1 cut(s)	12
PflFI	GACNNNGTC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	138
PsrI	GAACNNNNNNTAC	2 cut(s)	120, 152
PsyI	GACNNNGTC	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	193
SetI	ASST	6 cut(s)	21, 31, 38, 80, 95, 183
SgeI	CNNG	8 cut(s)	29, 60, 72, 102, 116, 144, 153, 190
SsiI	CCGC	1 cut(s)	157
SspMI	CTAG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	119
TaiI	ACGT	2 cut(s)	38, 80
TaqI	TCGA	2 cut(s)	38, 59
Tru1I	TTAA	1 cut(s)	193
Tru9I	TTAA	1 cut(s)	193
TscAI	CASTG	2 cut(s)	114, 124
TspDTI	ATGAA	2 cut(s)	17, 151
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	2 cut(s)	114, 124
Tth111I	GACNNNGTC	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	12
XspI	CTAG	1 cut(s)	90
ZraI	GACGTC	2 cut(s)	36, 78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.