Rh1DG241400

BON1-associated protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002449
Physical Location & Seq
Reverse (-)
45716288 .. 45717264
977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG241400.1

Sequence Viewer

Length: 540 bp
ATGGCAACTCGATATATAGAACTGACCGTTATCGCAGCCGAAAACCTCCAATCCAATCGCAAACCCTTGAAGAAAAACTCCTTCGTCACCGTCCGGACCGACGCCGCCTCCAAATCGTACCGGACAGCGGAGACGGACTCCGAAGGTGGAGGGCCAAGATGGAATGAGAAGTTAGTGATCGAGGTTCCTGCGCAAGCCAAGAATCTGATCATGGAAGTGCAATGCCAGAACGGGGCGAGGACGATCGGAGCGGCAACTATTCCTTTGACGGACTTCATCGGCGGTTGGGTGCCCGAGAGCTACATGCATTTTCTGAGTTACAGGCTGAGGGATGAGAGAGGTGTCAGGAATGGGATTATGAATATCTCGGTGAGGATGAAGGTGGACGAAGGTGCGACGTCGATGTATGCGAGGAAGTTGTCGAGTGGTTGCGCTACGACGTCGTCGCAGACTAGGTTGAGGTATCCGGCGGTGGATAACAGTGGCGTCGTAACTGGGGTTCCGGTGAATTGGAATAGCTATTCTCGAGTTCAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

179

Amino Acids

19.86

Weight (kDa)

9.57

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 5 - 92 7.4e-09 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 401, 443
Acc16I TGCGCA 1 cut(s) 192
AccB1I GGYRCC 1 cut(s) 289
AccBSI CCGCTC 1 cut(s) 251
AccIII TCCGGA 1 cut(s) 93
AciI CCGC 5 cut(s) 105, 128, 251, 282, 470
AcyI GRCGYC 4 cut(s) 102, 398, 440, 486
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 2 cut(s) 127, 232
AgsI TTSAA 2 cut(s) 70, 533
AluBI AGCT 2 cut(s) 300, 519
AluI AGCT 2 cut(s) 300, 519
Alw26I GTCTC 1 cut(s) 125
Ama87I CYCGRG 2 cut(s) 293, 525
Aor13HI TCCGGA 1 cut(s) 93
AoxI GGCC 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 35
AspLEI GCGC 2 cut(s) 193, 434
AspS9I GGNCC 2 cut(s) 96, 152
AsuHPI GGTGA 3 cut(s) 79, 382, 517
AvaI CYCGRG 2 cut(s) 293, 525
AvaII GGWCC 1 cut(s) 96
BaeGI GKGCMC 1 cut(s) 294
BanI GGYRCC 1 cut(s) 289
BbvCI CCTCAGC 1 cut(s) 326
BbvI GCAGC 1 cut(s) 47
BccI CCATC 1 cut(s) 153
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BciVI GTATCC 1 cut(s) 474
BclI TGATCA 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 1 cut(s) 453
BfuI GTATCC 1 cut(s) 474
BisI GCNGC 3 cut(s) 36, 105, 252
BlsI GCNGC 3 cut(s) 37, 106, 253
Bme18I GGWCC 1 cut(s) 96
BmeT110I CYCGRG 2 cut(s) 293, 525
BmgT120I GGNCC 2 cut(s) 96, 152
BmiI GGNNCC 3 cut(s) 186, 291, 501
BmrI ACTGGG 1 cut(s) 504
BmuI ACTGGG 1 cut(s) 504
BplI GAGNNNNNCTC 2 cut(s) 122, 154
Bpu10I CCTNAGC 1 cut(s) 326
BsaHI GRCGYC 4 cut(s) 102, 398, 440, 486
BsaWI WCCGGW 3 cut(s) 93, 120, 502
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 232
Bse1I ACTGG 1 cut(s) 499
Bse3DI GCAATG 1 cut(s) 227
BseAI TCCGGA 1 cut(s) 93
BseGI GGATG 2 cut(s) 337, 381
BseLI CCNNNNNNNGG 2 cut(s) 127, 232
BseMI GCAATG 1 cut(s) 227
BseMII CTCAG 2 cut(s) 305, 317
BseNI ACTGG 1 cut(s) 499
BseSI GKGCMC 1 cut(s) 294
BseXI GCAGC 1 cut(s) 47
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 1 cut(s) 154
BshNI GGYRCC 1 cut(s) 289
BsiEI CGRYCG 1 cut(s) 246
BsiHKCI CYCGRG 2 cut(s) 293, 525
BsiSI CCGG 4 cut(s) 94, 121, 467, 503
BslI CCNNNNNNNGG 2 cut(s) 127, 232
BsmAI GTCTC 1 cut(s) 125
BsmBI CGTCTC 1 cut(s) 125
BsnI GGCC 1 cut(s) 154
BsoBI CYCGRG 2 cut(s) 293, 525
Bsp1286I GDGCHC 1 cut(s) 294
Bsp13I TCCGGA 1 cut(s) 93
Bsp143I GATC 3 cut(s) 177, 207, 243
BspACI CCGC 5 cut(s) 105, 128, 251, 282, 470
BspANI GGCC 1 cut(s) 154
BspCNI CTCAG 2 cut(s) 306, 318
BspEI TCCGGA 1 cut(s) 93
BspLI GGNNCC 3 cut(s) 186, 291, 501
BspT107I GGYRCC 1 cut(s) 289
BsrBI CCGCTC 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 227
BsrI ACTGG 1 cut(s) 499
BssMI GATC 3 cut(s) 177, 207, 243
BssNI GRCGYC 4 cut(s) 102, 398, 440, 486
Bst4CI ACNGT 3 cut(s) 28, 91, 482
BstACI GRCGYC 4 cut(s) 102, 398, 440, 486
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 314, 326
BstF5I GGATG 2 cut(s) 337, 381
BstHHI GCGC 2 cut(s) 193, 434
BstKTI GATC 3 cut(s) 180, 210, 246
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 3 cut(s) 177, 207, 243
BstMCI CGRYCG 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 307
BstSLI GKGCMC 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 47
BsuI GTATCC 1 cut(s) 474
BsuRI GGCC 1 cut(s) 154
BtsCI GGATG 2 cut(s) 337, 381
BtsIMutI CAGTG 1 cut(s) 487
Cac8I GCNNGC 1 cut(s) 195
CfoI GCGC 2 cut(s) 193, 434
Cfr13I GGNCC 2 cut(s) 96, 152
CpoI CGGWCCG 1 cut(s) 96
CseI GACGC 2 cut(s) 110, 475
Csp6I GTAC 1 cut(s) 118
CspI CGGWCCG 1 cut(s) 96
CviAII CATG 2 cut(s) 211, 304
CviJI RGCY 6 cut(s) 38, 154, 197, 300, 325, 519
CviKI_1 RGCY 6 cut(s) 38, 154, 197, 300, 325, 519
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 2 cut(s) 314, 326
DpnI GATC 3 cut(s) 179, 209, 245
DpnII GATC 3 cut(s) 177, 207, 243
Eco47I GGWCC 1 cut(s) 96
Eco88I CYCGRG 2 cut(s) 293, 525
EcoT22I ATGCAT 1 cut(s) 309
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 2 cut(s) 214, 307
FaiI YATR 6 cut(s) 15, 17, 212, 305, 359, 408
FatI CATG 2 cut(s) 210, 303
FbaI TGATCA 1 cut(s) 207
Fnu4HI GCNGC 3 cut(s) 36, 105, 252
FokI GGATG 2 cut(s) 344, 388
Fsp4HI GCNGC 3 cut(s) 36, 105, 252
FspBI CTAG 1 cut(s) 453
FspI TGCGCA 1 cut(s) 192
GlaI GCGC 2 cut(s) 192, 433
GluI GCNGC 3 cut(s) 36, 105, 252
HaeIII GGCC 1 cut(s) 154
HapII CCGG 4 cut(s) 94, 121, 467, 503
HgaI GACGC 2 cut(s) 110, 475
HhaI GCGC 2 cut(s) 193, 434
Hin1I GRCGYC 4 cut(s) 102, 398, 440, 486
Hin1II CATG 2 cut(s) 214, 307
Hin6I GCGC 2 cut(s) 191, 432
HinP1I GCGC 2 cut(s) 191, 432
HinfI GANTC 2 cut(s) 137, 202
HpaII CCGG 4 cut(s) 94, 121, 467, 503
HphI GGTGA 3 cut(s) 79, 382, 517
Hpy166II GTNNAC 1 cut(s) 385
Hpy188I TCNGA 4 cut(s) 142, 207, 248, 315
Hpy188III TCNNGA 3 cut(s) 94, 346, 525
Hpy8I GTNNAC 1 cut(s) 385
Hpy99I CGWCG 7 cut(s) 104, 400, 403, 442, 445, 448, 491
HpyAV CCTTC 4 cut(s) 91, 137, 373, 383
HpyCH4III ACNGT 3 cut(s) 28, 91, 482
HpyCH4IV ACGT 2 cut(s) 398, 440
HpyCH4V TGCA 2 cut(s) 220, 307
HpyF3I CTNAG 2 cut(s) 314, 326
HpySE526I ACGT 2 cut(s) 398, 440
Hsp92I GRCGYC 4 cut(s) 102, 398, 440, 486
Hsp92II CATG 2 cut(s) 214, 307
HspAI GCGC 2 cut(s) 191, 432
Kpn2I TCCGGA 1 cut(s) 93
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 3 cut(s) 177, 207, 243
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 9 cut(s) 107, 134, 201, 239, 307, 331, 480, 480, 516
Lsp1109I GCAGC 1 cut(s) 47
MaeI CTAG 1 cut(s) 453
MaeII ACGT 2 cut(s) 398, 440
MaeIII GTNAC 3 cut(s) 85, 317, 490
MalI GATC 3 cut(s) 179, 209, 245
MbiI CCGCTC 1 cut(s) 251
MboI GATC 3 cut(s) 177, 207, 243
MboII GAAGA 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 1 cut(s) 508
MlyI GAGTC 1 cut(s) 131
Mph1103I ATGCAT 1 cut(s) 309
MroI TCCGGA 1 cut(s) 93
MslI CAYNNNNRTG 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 4 cut(s) 94, 121, 467, 503
NdeII GATC 3 cut(s) 177, 207, 243
NlaIII CATG 2 cut(s) 214, 307
NlaIV GGNNCC 3 cut(s) 186, 291, 501
NmuCI GTSAC 1 cut(s) 85
NsbI TGCGCA 1 cut(s) 192
NsiI ATGCAT 1 cut(s) 309
NspI RCATGY 1 cut(s) 307
PaeR7I CTCGAG 1 cut(s) 525
PcsI WCGNNNNNNNCGW 1 cut(s) 407
PfeI GAWTC 1 cut(s) 202
PflFI GACNNNGTC 1 cut(s) 442
PkrI GCNGC 3 cut(s) 37, 106, 253
Ple19I CGATCG 1 cut(s) 246
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PspN4I GGNNCC 3 cut(s) 186, 291, 501
PspPI GGNCC 2 cut(s) 96, 152
PsrI GAACNNNNNNTAC 2 cut(s) 483, 515
PsyI GACNNNGTC 1 cut(s) 442
PvuI CGATCG 1 cut(s) 246
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
RseI CAYNNNNRTG 1 cut(s) 215
Rsr2I CGGWCCG 1 cut(s) 96
RsrII CGGWCCG 1 cut(s) 96
SatI GCNGC 3 cut(s) 36, 105, 252
Sau3AI GATC 3 cut(s) 177, 207, 243
Sau96I GGNCC 2 cut(s) 96, 152
SchI GAGTC 1 cut(s) 131
SduI GDGCHC 1 cut(s) 294
Sfr274I CTCGAG 1 cut(s) 525
SinI GGWCC 1 cut(s) 96
SlaI CTCGAG 1 cut(s) 525
SmiMI CAYNNNNRTG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 525
SmoI CTYRAG 1 cut(s) 525
Sse9I AATT 1 cut(s) 508
SsiI CCGC 5 cut(s) 105, 128, 251, 282, 470
SspI AATATT 1 cut(s) 536
SspMI CTAG 1 cut(s) 453
TaaI ACNGT 3 cut(s) 28, 91, 482
TaiI ACGT 2 cut(s) 401, 443
TaqI TCGA 5 cut(s) 10, 180, 401, 422, 526
TaqII GACCGA 1 cut(s) 113
TasI AATT 1 cut(s) 508
TauI GCSGC 2 cut(s) 107, 254
TfiI GAWTC 1 cut(s) 202
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 3 cut(s) 265, 374, 392
TspGWI ACGGA 2 cut(s) 149, 284
TspRI CASTG 1 cut(s) 487
Tth111I GACNNNGTC 1 cut(s) 442
VpaK11BI GGWCC 1 cut(s) 96
XceI RCATGY 1 cut(s) 307
XhoI CTCGAG 1 cut(s) 525
XspI CTAG 1 cut(s) 453
ZraI GACGTC 2 cut(s) 399, 441
Zsp2I ATGCAT 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.