Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006445.1

Orthogroup ID

OG0002449

Physical Location & Seq

Genomic Coordinates Reverse (-)

22166 .. 22714

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006445.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgacgtctcgacatgtagaaatcactgttatctcagcagaaaatctgcaatcaaaccgaaaaccctttaagaaaaactccttcgttactgtgcggaccgacgctgccgtatccacctccaagttgtaccggacggcggagactgactgcgaaggcggcggtccaaggtggaacgagaagattgaggtcgaacttccggcgcaggctaggaatctgatattggaagtacaatgcaagaacggtgcaaggacgatcggagcggctagcattccggtgtcggacttcatcggcgggtgggtgcctgagaactacttgcattttctgagttataggttgagggatgagagaggtgtgaggaatgggattattaatatctcggtgaggatgaaggttccggaaggtttgatgtcgacgtacgcgaggaaggtgacgagtgggtttgctacgacgtcgtcgcagaccaaggtggggtatccggcggtggagaacagtggtgttgcaactggggttccgctgaattggaatagctatcctcgagttcaatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

182

Amino Acids

20.14

Weight (kDa)

9.58

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45760 AT3G61190 AT3G61190
fragaria_vesca	FvH4_7g13400 FvH4_7g13410
malus_domestica	MD01G1049300.v1.1 MD01G1049600.v1.1 MD07G1126300.v1.1 MD07G1126400.v1.1 MD07G1126500.v1.1 MD07G1126600.v1.1
prunus_persica	Prupe.2G157300_v2.0.a1 Prupe.2G157400_v2.0.a1
pyrus_communis	pycom01g07440 pycom01g07460 pycom07g12070 pycom07g12110 pycom07g12220
rosa_chinensis	RchiOBHm_Chr1g0352721 RchiOBHm_Chr1g0352731 RchiOBHm_Chr1g0352741
rosa_laevigata	RLG00000028315 RLG00000028316
rosa_multiflora	Rmu_sc0006445.1_g000002 Rmu_sc0006445.1_g000003 Rmu_sc0006445.1_g000006
rosa_roxburghii	Rroxscaffold_4G00302390 Rroxscaffold_4G00302410
rosa_rugosa	Rorug01G0231500 Rorug01G0231600
rosa_samantha	Rh1AG244500 Rh1AG244600 Rh1AG244800 Rh1BG215300 Rh1BG215400 Rh1BG215500 Rh1CG228300 Rh1CG228600 Rh1DG241300 Rh1DG241400 Rh1DG241500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	8, 452
AccB1I	GGYRCC	1 cut(s)	298
AccBSI	CCGCTC	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	410
AccII	CGCG	1 cut(s)	419
AccIII	TCCGGA	1 cut(s)	394
AciI	CCGC	8 cut(s)	94, 137, 156, 159, 260, 291, 479, 512
AcyI	GRCGYC	2 cut(s)	5, 449
AfaI	GTAC	3 cut(s)	128, 228, 416
AfiI	CCNNNNNNNGG	2 cut(s)	136, 468
AflIII	ACRYGT	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	542
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	1 cut(s)	528
AluI	AGCT	1 cut(s)	528
Alw26I	GTCTC	2 cut(s)	12, 134
Ama87I	CYCGRG	1 cut(s)	534
Aor13HI	TCCGGA	1 cut(s)	394
ApeKI	GCWGC	1 cut(s)	104
AseI	ATTAAT	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	2 cut(s)	96, 161
AsuHPI	GGTGA	2 cut(s)	391, 439
AsuNHI	GCTAGC	1 cut(s)	263
AvaI	CYCGRG	1 cut(s)	534
AvaII	GGWCC	2 cut(s)	96, 161
BanI	GGYRCC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	91
BceAI	ACGGC	2 cut(s)	92, 150
BciVI	GTATCC	2 cut(s)	121, 483
BcoDI	GTCTC	2 cut(s)	12, 134
BfaI	CTAG	2 cut(s)	207, 264
BfuI	GTATCC	2 cut(s)	121, 483
BisI	GCNGC	3 cut(s)	105, 157, 261
BlsI	GCNGC	3 cut(s)	106, 158, 262
Bme18I	GGWCC	2 cut(s)	96, 161
BmeT110I	CYCGRG	1 cut(s)	534
BmgT120I	GGNCC	2 cut(s)	96, 161
BmiI	GGNNCC	3 cut(s)	300, 393, 510
BmrI	ACTGGG	1 cut(s)	513
BmtI	GCTAGC	1 cut(s)	267
BmuI	ACTGGG	1 cut(s)	513
BsaHI	GRCGYC	2 cut(s)	5, 449
BsaJI	CCNNGG	2 cut(s)	164, 462
BsaWI	WCCGGW	3 cut(s)	129, 271, 394
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 468
Bse1I	ACTGG	1 cut(s)	508
BseAI	TCCGGA	1 cut(s)	394
BseDI	CCNNGG	2 cut(s)	164, 462
BseGI	GGATG	2 cut(s)	346, 390
BseLI	CCNNNNNNNGG	2 cut(s)	136, 468
BseMII	CTCAG	3 cut(s)	48, 294, 314
BseNI	ACTGG	1 cut(s)	508
BseXI	GCAGC	1 cut(s)	91
Bsh1236I	CGCG	1 cut(s)	419
Bsh1285I	CGRYCG	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	298
BsiEI	CGRYCG	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	534
BsiSI	CCGG	5 cut(s)	130, 197, 272, 395, 476
BsiWI	CGTACG	1 cut(s)	414
BslI	CCNNNNNNNGG	2 cut(s)	136, 468
BsmAI	GTCTC	2 cut(s)	12, 134
BsmBI	CGTCTC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	267
BsoBI	CYCGRG	1 cut(s)	534
Bsp13I	TCCGGA	1 cut(s)	394
Bsp143I	GATC	1 cut(s)	252
BspACI	CCGC	8 cut(s)	94, 137, 156, 159, 260, 291, 479, 512
BspCNI	CTCAG	3 cut(s)	47, 295, 315
BspEI	TCCGGA	1 cut(s)	394
BspFNI	CGCG	1 cut(s)	419
BspLI	GGNNCC	3 cut(s)	300, 393, 510
BspOI	GCTAGC	1 cut(s)	267
BspT107I	GGYRCC	1 cut(s)	298
BsrBI	CCGCTC	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	508
BssECI	CCNNGG	2 cut(s)	164, 462
BssMI	GATC	1 cut(s)	252
BssNI	GRCGYC	2 cut(s)	5, 449
BssT1I	CCWWGG	2 cut(s)	164, 462
Bst4CI	ACNGT	4 cut(s)	28, 91, 242, 491
BstACI	GRCGYC	2 cut(s)	5, 449
BstC8I	GCNNGC	2 cut(s)	204, 265
BstDEI	CTNAG	3 cut(s)	34, 303, 323
BstF5I	GGATG	2 cut(s)	346, 390
BstFNI	CGCG	1 cut(s)	419
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	1 cut(s)	255
BstMAI	GTCTC	2 cut(s)	12, 134
BstMBI	GATC	1 cut(s)	252
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNSI	RCATGY	1 cut(s)	17
BstUI	CGCG	1 cut(s)	419
BstV1I	GCAGC	1 cut(s)	91
BsuI	GTATCC	2 cut(s)	121, 483
BtsCI	GGATG	2 cut(s)	346, 390
BtsIMutI	CAGTG	2 cut(s)	24, 496
Cac8I	GCNNGC	2 cut(s)	204, 265
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	2 cut(s)	96, 161
CpoI	CGGWCCG	1 cut(s)	96
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	3 cut(s)	127, 227, 415
CspI	CGGWCCG	1 cut(s)	96
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	3 cut(s)	206, 263, 528
CviKI_1	RGCY	3 cut(s)	206, 263, 528
CviQI	GTAC	3 cut(s)	127, 227, 415
DdeI	CTNAG	3 cut(s)	34, 303, 323
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
EciI	GGCGGA	1 cut(s)	152
Eco130I	CCWWGG	2 cut(s)	164, 462
Eco47I	GGWCC	2 cut(s)	96, 161
Eco88I	CYCGRG	1 cut(s)	534
EcoT14I	CCWWGG	2 cut(s)	164, 462
ErhI	CCWWGG	2 cut(s)	164, 462
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	1 cut(s)	17
FaiI	YATR	2 cut(s)	15, 330
FatI	CATG	1 cut(s)	13
FauI	CCCGC	1 cut(s)	284
FblI	GTMKAC	1 cut(s)	410
Fnu4HI	GCNGC	3 cut(s)	105, 157, 261
FokI	GGATG	2 cut(s)	353, 397
Fsp4HI	GCNGC	3 cut(s)	105, 157, 261
FspBI	CTAG	2 cut(s)	207, 264
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	3 cut(s)	105, 157, 261
HapII	CCGG	5 cut(s)	130, 197, 272, 395, 476
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	1 cut(s)	202
Hin1I	GRCGYC	2 cut(s)	5, 449
Hin1II	CATG	1 cut(s)	17
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HinfI	GANTC	1 cut(s)	211
HpaII	CCGG	5 cut(s)	130, 197, 272, 395, 476
HphI	GGTGA	2 cut(s)	391, 439
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188I	TCNGA	4 cut(s)	216, 257, 280, 324
Hpy188III	TCNNGA	2 cut(s)	9, 395
Hpy8I	GTNNAC	1 cut(s)	411
Hpy99I	CGWCG	5 cut(s)	104, 415, 451, 454, 457
HpyAV	CCTTC	5 cut(s)	91, 146, 382, 392, 418
HpyCH4III	ACNGT	4 cut(s)	28, 91, 242, 491
HpyCH4IV	ACGT	3 cut(s)	5, 413, 449
HpyCH4V	TGCA	5 cut(s)	49, 234, 245, 316, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	3 cut(s)	34, 303, 323
HpySE526I	ACGT	3 cut(s)	5, 413, 449
Hsp92I	GRCGYC	2 cut(s)	5, 449
Hsp92II	CATG	1 cut(s)	17
HspAI	GCGC	1 cut(s)	200
Kpn2I	TCCGGA	1 cut(s)	394
Kzo9I	GATC	1 cut(s)	252
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	8 cut(s)	143, 188, 210, 285, 315, 408, 489, 489
Lsp1109I	GCAGC	1 cut(s)	91
MaeI	CTAG	2 cut(s)	207, 264
MaeII	ACGT	3 cut(s)	5, 413, 449
MaeIII	GTNAC	2 cut(s)	85, 427
MalI	GATC	1 cut(s)	254
MbiI	CCGCTC	1 cut(s)	260
MboI	GATC	1 cut(s)	252
MboII	GAAGA	1 cut(s)	190
MluCI	AATT	1 cut(s)	517
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	8 cut(s)	127, 178, 330, 341, 348, 375, 414, 543
MroI	TCCGGA	1 cut(s)	394
MseI	TTAA	2 cut(s)	69, 369
MslI	CAYNNNNRTG	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	514
MspI	CCGG	5 cut(s)	130, 197, 272, 395, 476
Mva1269I	GAATGC	1 cut(s)	267
MvnI	CGCG	1 cut(s)	419
MwoI	GCNNNNNNNGC	1 cut(s)	156
NdeII	GATC	1 cut(s)	252
NheI	GCTAGC	1 cut(s)	263
NlaIII	CATG	1 cut(s)	17
NlaIV	GGNNCC	3 cut(s)	300, 393, 510
NmuCI	GTSAC	1 cut(s)	427
NspI	RCATGY	1 cut(s)	17
PaeR7I	CTCGAG	1 cut(s)	534
PciI	ACATGT	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PctI	GAATGC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	211
Pfl23II	CGTACG	1 cut(s)	414
PflFI	GACNNNGTC	1 cut(s)	451
PkrI	GCNGC	3 cut(s)	106, 158, 262
Ple19I	CGATCG	1 cut(s)	255
PscI	ACATGT	1 cut(s)	13
PshBI	ATTAAT	1 cut(s)	369
PspLI	CGTACG	1 cut(s)	414
PspN4I	GGNNCC	3 cut(s)	300, 393, 510
PspPI	GGNCC	2 cut(s)	96, 161
PspXI	VCTCGAGB	1 cut(s)	534
PsyI	GACNNNGTC	1 cut(s)	451
PvuI	CGATCG	1 cut(s)	255
RsaI	GTAC	3 cut(s)	128, 228, 416
RsaNI	GTAC	3 cut(s)	127, 227, 415
RseI	CAYNNNNRTG	1 cut(s)	272
Rsr2I	CGGWCCG	1 cut(s)	96
RsrII	CGGWCCG	1 cut(s)	96
SalI	GTCGAC	1 cut(s)	409
SaqAI	TTAA	2 cut(s)	69, 369
SatI	GCNGC	3 cut(s)	105, 157, 261
Sau3AI	GATC	1 cut(s)	252
Sau96I	GGNCC	2 cut(s)	96, 161
Sfr274I	CTCGAG	1 cut(s)	534
SinI	GGWCC	2 cut(s)	96, 161
SlaI	CTCGAG	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	534
SmoI	CTYRAG	1 cut(s)	534
Sse9I	AATT	1 cut(s)	517
SsiI	CCGC	8 cut(s)	94, 137, 156, 159, 260, 291, 479, 512
SspI	AATATT	1 cut(s)	545
SspMI	CTAG	2 cut(s)	207, 264
StyI	CCWWGG	2 cut(s)	164, 462
TaaI	ACNGT	4 cut(s)	28, 91, 242, 491
TaiI	ACGT	3 cut(s)	8, 416, 452
TaqI	TCGA	4 cut(s)	10, 189, 410, 535
TaqII	GACCGA	1 cut(s)	113
TasI	AATT	1 cut(s)	517
TatI	WGTACW	1 cut(s)	226
TauI	GCSGC	2 cut(s)	159, 263
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	2 cut(s)	69, 369
Tru9I	TTAA	2 cut(s)	69, 369
TscAI	CASTG	2 cut(s)	31, 496
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	2 cut(s)	274, 401
TspRI	CASTG	2 cut(s)	31, 496
Tth111I	GACNNNGTC	1 cut(s)	451
VpaK11BI	GGWCC	2 cut(s)	96, 161
VspI	ATTAAT	1 cut(s)	369
XceI	RCATGY	1 cut(s)	17
XhoI	CTCGAG	1 cut(s)	534
XmiI	GTMKAC	1 cut(s)	410
XspI	CTAG	2 cut(s)	207, 264
ZraI	GACGTC	2 cut(s)	6, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.