FvH4_7g13410

BON1-associated protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002449
Physical Location & Seq
Reverse (-)
12032042 .. 12033271
1230 bp
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UTR
Exon/CDS
Intron
FvH4_7g13410.t1

Sequence Viewer

Length: 414 bp
ATGGCAGCAATCTCGTCTCGATTGGTGGAAATCACCGTTCTCTCCGCCGAGAATCTCCAATACAACCGCAAACCCTTGAAGAAAAACTCCTTCGTCACCGTCCGGACCAACCTCGCCGTCACCAAGCGTTATCGAACGGGCCAGACAGACTGCGAAGGCGGAGTGCCAAAGTGGAATGAGAAGATAGTGATGGAGTTTCCTGCTCAGGCTAGGAATTTGATCGTGGAAGTGCAATGCCAGAATGGGGCGAGGACCATCGGAGCGGCGAGCATTCCGGTGTCGGACTTCATCGGCGGGTGGGTGCCTGAGAACTACTTACACTTTCTGAGTTACAGGCTGAGAGACGAGAGAGGTCTGAGGAATGGGATTGTGAATATTTCGGTGAGGATGAAGGTGGAGGAAGGTGACGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

138

Amino Acids

15.44

Weight (kDa)

9.26

Isoelectric Point (pI)

23.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 9 - 97 7.1e-08 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 301
AccBSI CCGCTC 1 cut(s) 263
AccIII TCCGGA 1 cut(s) 102
AciI CCGC 5 cut(s) 45, 67, 159, 263, 294
AcsI RAATTY 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 1 cut(s) 79
Alw26I GTCTC 2 cut(s) 21, 336
Aor13HI TCCGGA 1 cut(s) 102
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 214
AspS9I GGNCC 3 cut(s) 105, 139, 252
AsuHPI GGTGA 4 cut(s) 25, 88, 112, 394
AvaII GGWCC 2 cut(s) 105, 252
BanI GGYRCC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 184, 263
BceAI ACGGC 1 cut(s) 101
BcgI CGANNNNNNTGC 1 cut(s) 28
BcoDI GTCTC 2 cut(s) 21, 336
BfaI CTAG 1 cut(s) 210
BisI GCNGC 2 cut(s) 6, 264
BlsI GCNGC 2 cut(s) 7, 265
Bme18I GGWCC 2 cut(s) 105, 252
BmgT120I GGNCC 3 cut(s) 105, 139, 252
BmiI GGNNCC 1 cut(s) 303
Bpu10I CCTNAGC 1 cut(s) 204
BsaWI WCCGGW 2 cut(s) 102, 274
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse3DI GCAATG 1 cut(s) 239
BseAI TCCGGA 1 cut(s) 102
BseGI GGATG 1 cut(s) 393
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 239
BseMII CTCAG 5 cut(s) 218, 297, 317, 329, 347
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 141
BshNI GGYRCC 1 cut(s) 301
BsiSI CCGG 2 cut(s) 103, 275
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 2 cut(s) 21, 336
BsmBI CGTCTC 2 cut(s) 21, 336
BsmI GAATGC 1 cut(s) 270
BsnI GGCC 1 cut(s) 141
Bsp13I TCCGGA 1 cut(s) 102
Bsp143I GATC 1 cut(s) 219
BspACI CCGC 5 cut(s) 45, 67, 159, 263, 294
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 5 cut(s) 217, 298, 318, 330, 348
BspEI TCCGGA 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 303
BspT107I GGYRCC 1 cut(s) 301
BsrBI CCGCTC 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 239
BssMI GATC 1 cut(s) 219
Bst4CI ACNGT 2 cut(s) 37, 100
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 5 cut(s) 204, 306, 326, 338, 356
BstF5I GGATG 1 cut(s) 393
BstKTI GATC 1 cut(s) 222
BstMAI GTCTC 2 cut(s) 21, 336
BstMBI GATC 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 141
BtsCI GGATG 1 cut(s) 393
Cac8I GCNNGC 1 cut(s) 268
Cfr13I GGNCC 3 cut(s) 105, 139, 252
CviJI RGCY 3 cut(s) 141, 209, 337
CviKI_1 RGCY 3 cut(s) 141, 209, 337
DdeI CTNAG 5 cut(s) 204, 306, 326, 338, 356
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
EciI GGCGGA 2 cut(s) 34, 174
Eco47I GGWCC 2 cut(s) 105, 252
Esp3I CGTCTC 2 cut(s) 21, 336
FauI CCCGC 1 cut(s) 287
Fnu4HI GCNGC 2 cut(s) 6, 264
FokI GGATG 1 cut(s) 400
Fsp4HI GCNGC 2 cut(s) 6, 264
FspBI CTAG 1 cut(s) 210
GluI GCNGC 2 cut(s) 6, 264
HaeIII GGCC 1 cut(s) 141
HapII CCGG 2 cut(s) 103, 275
HinfI GANTC 1 cut(s) 52
HpaII CCGG 2 cut(s) 103, 275
HphI GGTGA 4 cut(s) 25, 88, 112, 394
Hpy188I TCNGA 4 cut(s) 260, 283, 327, 357
Hpy188III TCNNGA 2 cut(s) 18, 103
HpyAV CCTTC 4 cut(s) 100, 149, 385, 395
HpyCH4III ACNGT 2 cut(s) 37, 100
HpyCH4V TGCA 1 cut(s) 232
HpyF3I CTNAG 5 cut(s) 204, 306, 326, 338, 356
Kpn2I TCCGGA 1 cut(s) 102
Kzo9I GATC 1 cut(s) 219
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 8 cut(s) 116, 155, 191, 213, 251, 288, 318, 319
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 1 cut(s) 210
MaeIII GTNAC 4 cut(s) 94, 118, 329, 404
MalI GATC 1 cut(s) 221
MbiI CCGCTC 1 cut(s) 263
MboI GATC 1 cut(s) 219
MboII GAAGA 2 cut(s) 91, 193
MluCI AATT 1 cut(s) 214
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 6 cut(s) 122, 243, 344, 351, 378, 391
MroI TCCGGA 1 cut(s) 102
MslI CAYNNNNRTG 1 cut(s) 275
MspI CCGG 2 cut(s) 103, 275
Mva1269I GAATGC 1 cut(s) 270
NdeII GATC 1 cut(s) 219
NlaIV GGNNCC 1 cut(s) 303
NmeAIII GCCGAG 1 cut(s) 73
NmuCI GTSAC 3 cut(s) 94, 118, 404
PctI GAATGC 1 cut(s) 270
PfeI GAWTC 1 cut(s) 52
PkrI GCNGC 2 cut(s) 7, 265
PspN4I GGNNCC 1 cut(s) 303
PspPI GGNCC 3 cut(s) 105, 139, 252
RseI CAYNNNNRTG 1 cut(s) 275
SatI GCNGC 2 cut(s) 6, 264
Sau3AI GATC 1 cut(s) 219
Sau96I GGNCC 3 cut(s) 105, 139, 252
SetI ASST 4 cut(s) 114, 355, 396, 406
SinI GGWCC 2 cut(s) 105, 252
SmiMI CAYNNNNRTG 1 cut(s) 275
Sse9I AATT 1 cut(s) 214
SsiI CCGC 5 cut(s) 45, 67, 159, 263, 294
SspI AATATT 1 cut(s) 376
SspMI CTAG 1 cut(s) 210
TaaI ACNGT 2 cut(s) 37, 100
TaqI TCGA 2 cut(s) 19, 133
TasI AATT 1 cut(s) 214
TauI GCSGC 1 cut(s) 266
TfiI GAWTC 1 cut(s) 52
TseFI GTSAC 3 cut(s) 94, 118, 404
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 3 cut(s) 94, 118, 404
TspDTI ATGAA 2 cut(s) 277, 404
VpaK11BI GGWCC 2 cut(s) 105, 252
XapI RAATTY 1 cut(s) 214
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.