Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002449

Physical Location & Seq

Genomic Coordinates Forward (+)

33322386 .. 33323255

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0231500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAATCCAATTTCTGGCTTACCAGATTGCATCAGAGGCCTTGGAGGGATTGATCTCCTTAAGTTGCAAAAGTGTACTAGTCTCAAATCTCTTGTCAGACTACCAAAAGTAGAAGTACTGGATATGTGGCATTGTGACTCGTTGGAAAAAATAACATTTCAGTCATTATCATGCATATCAAAGAAAATAGACATGTATCTGAGTAGGCGCTCCAAACTAGCTGAGATTGAGCACTGGTTCAAGTTGGAACCTATTGTAAAGGTTTTGTGCAACTTGAAACCTCTGGAAGCCATTAAGATGGTGTCTGAATATGGTATATTCAACACATTTCTTCTTGGAAATGAGGTTCCGGGGCAGTTCAGCCATAGAAGCAGTGGTGCCTCCTCAATATCTTTTACAGTGCCTTTACTTCCTAACCTCGGGATTCGAGGCTTCAACTTCTTCTCTATCTATGCGAAGTCCAAAGGTCTTCGTTCTGGTCTTTTACCTAATCATCATCCTGTAATGATAAGATTCACTAATAAGAGCAAGTCTCTGAAGTGGATCTATGGGCCGTCATTCTATGGCATTCCAAGTGAGGAAAAAGACATGATATGGTTGAGCCACTGGAAGTTGGGGAATCGATTGGAAGGTGGTGATGAAGTCACTGTTTCAGTGTTTACACCAGAAACAACATTTTCATGTAAAAGAATGGGGCATTCAGATTGTGGAAGAACAAGAAGACCAGATGATCAGTACCCAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

248

Amino Acids

28.14

Weight (kDa)

9.38

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45760 AT3G61190 AT3G61190
fragaria_vesca	FvH4_7g13400 FvH4_7g13410
malus_domestica	MD01G1049300.v1.1 MD01G1049600.v1.1 MD07G1126300.v1.1 MD07G1126400.v1.1 MD07G1126500.v1.1 MD07G1126600.v1.1
prunus_persica	Prupe.2G157300_v2.0.a1 Prupe.2G157400_v2.0.a1
pyrus_communis	pycom01g07440 pycom01g07460 pycom07g12070 pycom07g12110 pycom07g12220
rosa_chinensis	RchiOBHm_Chr1g0352721 RchiOBHm_Chr1g0352731 RchiOBHm_Chr1g0352741
rosa_laevigata	RLG00000028315 RLG00000028316
rosa_multiflora	Rmu_sc0006445.1_g000002 Rmu_sc0006445.1_g000003 Rmu_sc0006445.1_g000006
rosa_roxburghii	Rroxscaffold_4G00302390 Rroxscaffold_4G00302410
rosa_rugosa	Rorug01G0231500 Rorug01G0231600
rosa_samantha	Rh1AG244500 Rh1AG244600 Rh1AG244800 Rh1BG215300 Rh1BG215400 Rh1BG215500 Rh1CG228300 Rh1CG228600 Rh1DG241300 Rh1DG241400 Rh1DG241500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	377
AccB7I	CCANNNNNTGG	1 cut(s)	14
AclWI	GGATC	1 cut(s)	551
AcuI	CTGAAG	1 cut(s)	557
AfaI	GTAC	3 cut(s)	76, 117, 737
AfiI	CCNNNNNNNGG	2 cut(s)	14, 419
AflII	CTTAAG	1 cut(s)	59
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	4 cut(s)	241, 277, 322, 436
AhlI	ACTAGT	1 cut(s)	77
AloI	GAACNNNNNNTCC	2 cut(s)	330, 362
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	2 cut(s)	86, 537
AlwI	GGATC	1 cut(s)	551
Ama87I	CYCGRG	1 cut(s)	419
AoxI	GGCC	2 cut(s)	37, 551
ArsI	GACNNNNNNTTYG	2 cut(s)	78, 110
AspLEI	GCGC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	551
AsuC2I	CCSGG	1 cut(s)	351
AsuHPI	GGTGA	1 cut(s)	647
AvaI	CYCGRG	1 cut(s)	419
BanI	GGYRCC	1 cut(s)	377
BbsI	GAAGAC	2 cut(s)	461, 727
Bbv12I	GWGCWC	1 cut(s)	234
BccI	CCATC	1 cut(s)	292
BceAI	ACGGC	1 cut(s)	538
BclI	TGATCA	1 cut(s)	730
BcnI	CCSGG	1 cut(s)	351
BcoDI	GTCTC	2 cut(s)	86, 537
BcuI	ACTAGT	1 cut(s)	77
BfaI	CTAG	2 cut(s)	78, 218
BfoI	RGCGCY	1 cut(s)	211
BfrI	CTTAAG	1 cut(s)	59
BmcAI	AGTACT	1 cut(s)	117
Bme1390I	CCNGG	1 cut(s)	351
BmeT110I	CYCGRG	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	3 cut(s)	249, 348, 379
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	1 cut(s)	39
BpiI	GAAGAC	2 cut(s)	461, 727
BplI	GAGNNNNNCTC	2 cut(s)	517, 549
BpuMI	CCSGG	1 cut(s)	351
Bsa29I	ATCGAT	1 cut(s)	622
BsaJI	CCNNGG	3 cut(s)	40, 350, 418
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 419
Bse1I	ACTGG	3 cut(s)	123, 239, 611
BseCI	ATCGAT	1 cut(s)	622
BseDI	CCNNGG	3 cut(s)	40, 350, 418
BseGI	GGATG	1 cut(s)	496
BseLI	CCNNNNNNNGG	2 cut(s)	14, 419
BseMII	CTCAG	2 cut(s)	191, 213
BseNI	ACTGG	3 cut(s)	123, 239, 611
BseRI	GAGGAG	1 cut(s)	373
BshFI	GGCC	2 cut(s)	39, 553
BshNI	GGYRCC	1 cut(s)	377
BshVI	ATCGAT	1 cut(s)	622
BsiHKAI	GWGCWC	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	419
BsiSI	CCGG	1 cut(s)	350
BslI	CCNNNNNNNGG	2 cut(s)	14, 419
BsmAI	GTCTC	2 cut(s)	86, 537
BsmI	GAATGC	2 cut(s)	567, 697
BsnI	GGCC	2 cut(s)	39, 553
BsoBI	CYCGRG	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	3 cut(s)	52, 543, 730
BspANI	GGCC	2 cut(s)	39, 553
BspCNI	CTCAG	2 cut(s)	192, 214
BspDI	ATCGAT	1 cut(s)	622
BspLI	GGNNCC	3 cut(s)	249, 348, 379
BspPI	GGATC	1 cut(s)	551
BspT107I	GGYRCC	1 cut(s)	377
BspTI	CTTAAG	1 cut(s)	59
BsrI	ACTGG	3 cut(s)	123, 239, 611
BssECI	CCNNGG	3 cut(s)	40, 350, 418
BssMI	GATC	3 cut(s)	52, 543, 730
BssT1I	CCWWGG	1 cut(s)	40
Bst4CI	ACNGT	2 cut(s)	400, 649
BstAFI	CTTAAG	1 cut(s)	59
BstDEI	CTNAG	2 cut(s)	200, 222
BstF5I	GGATG	1 cut(s)	496
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	3 cut(s)	55, 546, 733
BstMAI	GTCTC	2 cut(s)	86, 537
BstMBI	GATC	3 cut(s)	52, 543, 730
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 369
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	349
BstV2I	GAAGAC	2 cut(s)	461, 727
BstX2I	RGATCY	1 cut(s)	543
BstXI	CCANNNNNNTGG	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	543
Bsu15I	ATCGAT	1 cut(s)	622
BsuRI	GGCC	2 cut(s)	39, 553
BsuTUI	ATCGAT	1 cut(s)	622
BtsCI	GGATG	1 cut(s)	496
BtsI	GCAGTG	1 cut(s)	379
BtsIMutI	CAGTG	6 cut(s)	232, 379, 405, 604, 645, 660
CfoI	GCGC	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	551
ClaI	ATCGAT	1 cut(s)	622
Csp6I	GTAC	3 cut(s)	75, 116, 736
CviAII	CATG	4 cut(s)	171, 193, 589, 681
CviJI	RGCY	8 cut(s)	18, 39, 221, 290, 363, 432, 553, 603
CviKI_1	RGCY	8 cut(s)	18, 39, 221, 290, 363, 432, 553, 603
CviQI	GTAC	3 cut(s)	75, 116, 736
DdeI	CTNAG	2 cut(s)	200, 222
DpnI	GATC	3 cut(s)	54, 545, 732
DpnII	GATC	3 cut(s)	52, 543, 730
Eco130I	CCWWGG	1 cut(s)	40
Eco147I	AGGCCT	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	557
Eco88I	CYCGRG	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	40
EcoT22I	ATGCAT	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	4 cut(s)	174, 196, 592, 684
FatI	CATG	4 cut(s)	170, 192, 588, 680
FbaI	TGATCA	1 cut(s)	730
FokI	GGATG	1 cut(s)	483
FspBI	CTAG	2 cut(s)	78, 218
GlaI	GCGC	1 cut(s)	209
HaeII	RGCGCY	1 cut(s)	211
HaeIII	GGCC	2 cut(s)	39, 553
HapII	CCGG	1 cut(s)	350
HhaI	GCGC	1 cut(s)	210
Hin1II	CATG	4 cut(s)	174, 196, 592, 684
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HinfI	GANTC	5 cut(s)	4, 137, 424, 513, 619
HpaII	CCGG	1 cut(s)	350
HphI	GGTGA	1 cut(s)	647
Hpy166II	GTNNAC	2 cut(s)	75, 660
Hpy188I	TCNGA	6 cut(s)	35, 98, 201, 307, 537, 703
Hpy188III	TCNNGA	2 cut(s)	284, 421
Hpy8I	GTNNAC	2 cut(s)	75, 660
HpyAV	CCTTC	1 cut(s)	623
HpyCH4III	ACNGT	2 cut(s)	400, 649
HpyCH4V	TGCA	4 cut(s)	30, 67, 174, 270
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 369
HpyF3I	CTNAG	2 cut(s)	200, 222
Hsp92II	CATG	4 cut(s)	174, 196, 592, 684
HspAI	GCGC	1 cut(s)	208
Ksp22I	TGATCA	1 cut(s)	730
Kzo9I	GATC	3 cut(s)	52, 543, 730
LmnI	GCTCC	1 cut(s)	215
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	2 cut(s)	78, 218
MaeIII	GTNAC	2 cut(s)	134, 643
MalI	GATC	3 cut(s)	54, 545, 732
MboI	GATC	3 cut(s)	52, 543, 730
MboII	GAAGA	5 cut(s)	323, 433, 461, 723, 732
MflI	RGATCY	1 cut(s)	543
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	2 cut(s)	123, 225
MnlI	CCTC	9 cut(s)	29, 38, 291, 337, 391, 394, 422, 428, 571
Mph1103I	ATGCAT	1 cut(s)	176
MseI	TTAA	2 cut(s)	60, 294
MslI	CAYNNNNRTG	3 cut(s)	169, 296, 679
MspCI	CTTAAG	1 cut(s)	59
MspI	CCGG	1 cut(s)	350
MspR9I	CCNGG	1 cut(s)	351
Mva1269I	GAATGC	2 cut(s)	567, 697
MwoI	GCNNNNNNNGC	2 cut(s)	36, 369
NciI	CCSGG	1 cut(s)	351
NdeII	GATC	3 cut(s)	52, 543, 730
NlaIII	CATG	4 cut(s)	174, 196, 592, 684
NlaIV	GGNNCC	3 cut(s)	249, 348, 379
NmuCI	GTSAC	2 cut(s)	134, 643
NsiI	ATGCAT	1 cut(s)	176
NspI	RCATGY	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	39
PciI	ACATGT	1 cut(s)	192
PctI	GAATGC	2 cut(s)	567, 697
PfeI	GAWTC	4 cut(s)	4, 424, 513, 619
PflMI	CCANNNNNTGG	1 cut(s)	14
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PscI	ACATGT	1 cut(s)	192
PspN4I	GGNNCC	3 cut(s)	249, 348, 379
PspPI	GGNCC	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	543
RsaI	GTAC	3 cut(s)	76, 117, 737
RsaNI	GTAC	3 cut(s)	75, 116, 736
RseI	CAYNNNNRTG	3 cut(s)	169, 296, 679
SaqAI	TTAA	2 cut(s)	60, 294
Sau3AI	GATC	3 cut(s)	52, 543, 730
Sau96I	GGNCC	1 cut(s)	551
ScaI	AGTACT	1 cut(s)	117
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	9 cut(s)	223, 253, 264, 283, 348, 420, 469, 490, 634
SfaNI	GCATC	1 cut(s)	39
SmiMI	CAYNNNNRTG	3 cut(s)	169, 296, 679
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
SpeI	ACTAGT	1 cut(s)	77
Sse9I	AATT	1 cut(s)	9
SseBI	AGGCCT	1 cut(s)	39
SspMI	CTAG	2 cut(s)	78, 218
StuI	AGGCCT	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	2 cut(s)	400, 649
TaqI	TCGA	2 cut(s)	427, 622
TasI	AATT	1 cut(s)	9
TatI	WGTACW	2 cut(s)	74, 115
TfiI	GAWTC	4 cut(s)	4, 424, 513, 619
Tru1I	TTAA	2 cut(s)	60, 294
Tru9I	TTAA	2 cut(s)	60, 294
TscAI	CASTG	6 cut(s)	239, 379, 405, 611, 652, 660
TseFI	GTSAC	2 cut(s)	134, 643
Tsp45I	GTSAC	2 cut(s)	134, 643
TspDTI	ATGAA	3 cut(s)	17, 654, 669
TspRI	CASTG	6 cut(s)	239, 379, 405, 611, 652, 660
Van91I	CCANNNNNTGG	1 cut(s)	14
Vha464I	CTTAAG	1 cut(s)	59
XceI	RCATGY	1 cut(s)	196
XcmI	CCANNNNNNNNNTGG	1 cut(s)	371
XspI	CTAG	2 cut(s)	78, 218
ZrmI	AGTACT	1 cut(s)	117
Zsp2I	ATGCAT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.