MD07G1126300.v1.1

BON1-associated protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0002449
Physical Location & Seq
Forward (+)
17813234 .. 17813773
540 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1126300.v1.1.491

Sequence Viewer

Length: 540 bp
ATGGCAGCCAATTTCCGGACGCTGGAAATCACGGTGATCTCCGCTGGGAACCTGCAATTAAATCGAAAACCCATCAGCAAAAACACCTCCGTGACCGTCCGGACCGACACCAACAGCCAGTTTCGCACCACGGACATGGACACTGAAGGCGGCGCCTACCCACAGTGGAACGAGAAGCTTGTGCTTGACTTGCCAACGCACTCCAAGTCCATCACGGTGGAGGTCCAATGCCAGACTTCGTACGGCGTCAGGACGTTCGCGACGGCGAGTATTCCGGCATCGGATTTTGTTGGCGGGTACGTGCCGGAGGGTTACCTGCATTTTTTGAGTTACAGGCTGAGAGATTACAAGGGGGAGAAGAATGGGATTATTAATATTTCTGTGAGGATGAAGGTTCCGGAGATGTACAGCTCTTGTGCAAGTTCAACGACGTCGTCTCCCTCGATGATGGGGTTTCCGGCGGCTGGAAACAATAGTTTTGGCGGCAACATTGCGATCGGAGTTCCGGTTTGGTATGGTGCCTATCAGAAAAATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

180

Amino Acids

19.62

Weight (kDa)

8.85

Isoelectric Point (pI)

31.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 7 - 101 2.3e-07 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 434
Acc36I ACCTGC 2 cut(s) 60, 324
AccB1I GGYRCC 2 cut(s) 152, 518
AccII CGCG 1 cut(s) 260
AccIII TCCGGA 3 cut(s) 15, 99, 397
AciI CCGC 5 cut(s) 42, 150, 294, 461, 483
AcuI CTGAAG 1 cut(s) 165
AcyI GRCGYC 3 cut(s) 153, 246, 431
AfaI GTAC 3 cut(s) 242, 299, 407
AfiI CCNNNNNNNGG 3 cut(s) 15, 22, 464
AgsI TTSAA 1 cut(s) 426
AleI CACNNNNGTG 1 cut(s) 89
AluBI AGCT 2 cut(s) 178, 411
AluI AGCT 2 cut(s) 178, 411
Alw26I GTCTC 1 cut(s) 441
Aor13HI TCCGGA 3 cut(s) 15, 99, 397
ApeKI GCWGC 1 cut(s) 5
AseI ATTAAT 1 cut(s) 372
AspLEI GCGC 1 cut(s) 155
AspS9I GGNCC 2 cut(s) 102, 223
AsuHPI GGTGA 1 cut(s) 46
AvaII GGWCC 2 cut(s) 102, 223
BanI GGYRCC 2 cut(s) 152, 518
BbvI GCAGC 1 cut(s) 17
BccI CCATC 3 cut(s) 80, 218, 442
BceAI ACGGC 2 cut(s) 259, 279
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BcoDI GTCTC 1 cut(s) 441
BfoI RGCGCY 1 cut(s) 156
BfuAI ACCTGC 2 cut(s) 60, 324
BisI GCNGC 4 cut(s) 6, 151, 462, 484
BlsI GCNGC 4 cut(s) 7, 152, 463, 485
Bme18I GGWCC 2 cut(s) 102, 223
BmgT120I GGNCC 2 cut(s) 102, 223
BmiI GGNNCC 4 cut(s) 50, 154, 396, 520
BmsI GCATC 1 cut(s) 287
BsaAI YACGTR 1 cut(s) 301
BsaHI GRCGYC 3 cut(s) 153, 246, 431
BsaJI CCNNGG 1 cut(s) 129
BsaWI WCCGGW 4 cut(s) 15, 99, 397, 505
BsaXI ACNNNNNCTCC 4 cut(s) 421, 451, 492, 522
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 22, 464
Bse1I ACTGG 1 cut(s) 118
Bse3DI GCAATG 1 cut(s) 489
BseAI TCCGGA 3 cut(s) 15, 99, 397
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 1 cut(s) 393
BseLI CCNNNNNNNGG 3 cut(s) 15, 22, 464
BseMI GCAATG 1 cut(s) 489
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 17
BseYI CCCAGC 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 260
Bsh1285I CGRYCG 1 cut(s) 498
BshNI GGYRCC 2 cut(s) 152, 518
BsiEI CGRYCG 1 cut(s) 498
BsiSI CCGG 7 cut(s) 16, 100, 275, 305, 398, 458, 506
BsiWI CGTACG 1 cut(s) 240
BslI CCNNNNNNNGG 3 cut(s) 15, 22, 464
BsmAI GTCTC 1 cut(s) 441
BsmBI CGTCTC 1 cut(s) 441
Bsp13I TCCGGA 3 cut(s) 15, 99, 397
Bsp1407I TGTACA 1 cut(s) 405
Bsp143I GATC 2 cut(s) 36, 495
Bsp68I TCGCGA 1 cut(s) 260
BspACI CCGC 5 cut(s) 42, 150, 294, 461, 483
BspCNI CTCAG 1 cut(s) 330
BspEI TCCGGA 3 cut(s) 15, 99, 397
BspFNI CGCG 1 cut(s) 260
BspLI GGNNCC 4 cut(s) 50, 154, 396, 520
BspMI ACCTGC 2 cut(s) 60, 324
BspT107I GGYRCC 2 cut(s) 152, 518
BsrDI GCAATG 1 cut(s) 489
BsrGI TGTACA 1 cut(s) 405
BsrI ACTGG 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 2 cut(s) 36, 495
BssNI GRCGYC 3 cut(s) 153, 246, 431
Bst4CI ACNGT 4 cut(s) 34, 97, 165, 217
BstACI GRCGYC 3 cut(s) 153, 246, 431
BstAUI TGTACA 1 cut(s) 405
BstBAI YACGTR 1 cut(s) 301
BstDEI CTNAG 1 cut(s) 338
BstDSI CCRYGG 1 cut(s) 129
BstEII GGTNACC 1 cut(s) 311
BstF5I GGATG 1 cut(s) 393
BstFNI CGCG 1 cut(s) 260
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 2 cut(s) 39, 498
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 2 cut(s) 36, 495
BstMCI CGRYCG 1 cut(s) 498
BstMWI GCNNNNNNNGC 2 cut(s) 123, 190
BstPI GGTNACC 1 cut(s) 311
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 17
BstXI CCANNNNNNTGG 2 cut(s) 136, 217
BtgI CCRYGG 1 cut(s) 129
BtsCI GGATG 1 cut(s) 393
BtsIMutI CAGTG 2 cut(s) 141, 170
BtuMI TCGCGA 1 cut(s) 260
BveI ACCTGC 2 cut(s) 60, 324
CfoI GCGC 1 cut(s) 155
Cfr13I GGNCC 2 cut(s) 102, 223
CpoI CGGWCCG 1 cut(s) 102
CseI GACGC 2 cut(s) 28, 235
Csp6I GTAC 3 cut(s) 241, 298, 406
CspI CGGWCCG 1 cut(s) 102
CviAII CATG 1 cut(s) 136
CviJI RGCY 6 cut(s) 8, 117, 178, 337, 411, 464
CviKI_1 RGCY 6 cut(s) 8, 117, 178, 337, 411, 464
CviQI GTAC 3 cut(s) 241, 298, 406
DdeI CTNAG 1 cut(s) 338
DinI GGCGCC 1 cut(s) 154
DpnI GATC 2 cut(s) 38, 497
DpnII GATC 2 cut(s) 36, 495
Eco47I GGWCC 2 cut(s) 102, 223
Eco57I CTGAAG 1 cut(s) 165
Eco91I GGTNACC 1 cut(s) 311
EcoO65I GGTNACC 1 cut(s) 311
EgeI GGCGCC 1 cut(s) 154
EheI GGCGCC 1 cut(s) 154
Esp3I CGTCTC 1 cut(s) 441
FaeI CATG 1 cut(s) 139
FaiI YATR 2 cut(s) 137, 516
FatI CATG 1 cut(s) 135
FauI CCCGC 1 cut(s) 287
Fnu4HI GCNGC 4 cut(s) 6, 151, 462, 484
FokI GGATG 1 cut(s) 400
Fsp4HI GCNGC 4 cut(s) 6, 151, 462, 484
GlaI GCGC 1 cut(s) 154
GluI GCNGC 4 cut(s) 6, 151, 462, 484
GsaI CCCAGC 1 cut(s) 48
HaeII RGCGCY 1 cut(s) 156
HapII CCGG 7 cut(s) 16, 100, 275, 305, 398, 458, 506
HgaI GACGC 2 cut(s) 28, 235
HhaI GCGC 1 cut(s) 155
Hin1I GRCGYC 3 cut(s) 153, 246, 431
Hin1II CATG 1 cut(s) 139
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HindIII AAGCTT 1 cut(s) 176
HpaII CCGG 7 cut(s) 16, 100, 275, 305, 398, 458, 506
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 3 cut(s) 283, 500, 528
Hpy188III TCNNGA 5 cut(s) 16, 100, 250, 259, 398
Hpy99I CGWCG 3 cut(s) 265, 433, 436
HpyAV CCTTC 2 cut(s) 140, 385
HpyCH4III ACNGT 4 cut(s) 34, 97, 165, 217
HpyCH4IV ACGT 3 cut(s) 254, 300, 431
HpyCH4V TGCA 3 cut(s) 55, 319, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 190
HpyF3I CTNAG 1 cut(s) 338
HpySE526I ACGT 3 cut(s) 254, 300, 431
Hsp92I GRCGYC 3 cut(s) 153, 246, 431
Hsp92II CATG 1 cut(s) 139
HspAI GCGC 1 cut(s) 153
KasI GGCGCC 1 cut(s) 152
Kpn2I TCCGGA 3 cut(s) 15, 99, 397
Kzo9I GATC 2 cut(s) 36, 495
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 287
MaeII ACGT 3 cut(s) 254, 300, 431
MaeIII GTNAC 3 cut(s) 91, 311, 329
MalI GATC 2 cut(s) 38, 497
MboI GATC 2 cut(s) 36, 495
MboII GAAGA 1 cut(s) 370
MluCI AATT 3 cut(s) 10, 56, 532
Mly113I GGCGCC 1 cut(s) 153
MnlI CCTC 5 cut(s) 97, 214, 301, 378, 451
MroI TCCGGA 3 cut(s) 15, 99, 397
MseI TTAA 2 cut(s) 59, 372
MslI CAYNNNNRTG 3 cut(s) 89, 134, 215
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 7 cut(s) 16, 100, 275, 305, 398, 458, 506
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 2 cut(s) 123, 190
NarI GGCGCC 1 cut(s) 153
NdeII GATC 2 cut(s) 36, 495
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 4 cut(s) 50, 154, 396, 520
NmuCI GTSAC 1 cut(s) 91
NruI TCGCGA 1 cut(s) 260
OliI CACNNNNGTG 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 440
Pfl23II CGTACG 1 cut(s) 240
PflFI GACNNNGTC 1 cut(s) 433
PkrI GCNGC 4 cut(s) 7, 152, 463, 485
Ple19I CGATCG 1 cut(s) 498
PluTI GGCGCC 1 cut(s) 156
Ppu21I YACGTR 1 cut(s) 301
PshBI ATTAAT 1 cut(s) 372
PspEI GGTNACC 1 cut(s) 311
PspFI CCCAGC 1 cut(s) 44
PspLI CGTACG 1 cut(s) 240
PspN4I GGNNCC 4 cut(s) 50, 154, 396, 520
PspPI GGNCC 2 cut(s) 102, 223
PsyI GACNNNGTC 1 cut(s) 433
PvuI CGATCG 1 cut(s) 498
RruI TCGCGA 1 cut(s) 260
RsaI GTAC 3 cut(s) 242, 299, 407
RsaNI GTAC 3 cut(s) 241, 298, 406
RseI CAYNNNNRTG 3 cut(s) 89, 134, 215
Rsr2I CGGWCCG 1 cut(s) 102
RsrII CGGWCCG 1 cut(s) 102
SaqAI TTAA 2 cut(s) 59, 372
SatI GCNGC 4 cut(s) 6, 151, 462, 484
Sau3AI GATC 2 cut(s) 36, 495
Sau96I GGNCC 2 cut(s) 102, 223
SfaNI GCATC 1 cut(s) 287
SfoI GGCGCC 1 cut(s) 154
SinI GGWCC 2 cut(s) 102, 223
SmiMI CAYNNNNRTG 3 cut(s) 89, 134, 215
Sse9I AATT 3 cut(s) 10, 56, 532
SsiI CCGC 5 cut(s) 42, 150, 294, 461, 483
SspDI GGCGCC 1 cut(s) 152
SspI AATATT 1 cut(s) 376
TaaI ACNGT 4 cut(s) 34, 97, 165, 217
TaiI ACGT 3 cut(s) 257, 303, 434
TaqI TCGA 2 cut(s) 64, 443
TaqII GACCGA 1 cut(s) 119
TasI AATT 3 cut(s) 10, 56, 532
TatI WGTACW 1 cut(s) 405
TauI GCSGC 3 cut(s) 153, 464, 486
Tru1I TTAA 2 cut(s) 59, 372
Tru9I TTAA 2 cut(s) 59, 372
TscAI CASTG 2 cut(s) 148, 170
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 404
TspGWI ACGGA 2 cut(s) 79, 146
TspRI CASTG 2 cut(s) 148, 170
Tth111I GACNNNGTC 1 cut(s) 433
VpaK11BI GGWCC 2 cut(s) 102, 223
VspI ATTAAT 1 cut(s) 372
ZraI GACGTC 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.