Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003925

Physical Location & Seq

Genomic Coordinates Reverse (-)

23411053 .. 23411988

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G63390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGATGGAAGATGACGATGATTTCTCGGCGGCTGCGACTACCGTTGTGTTCGACCGTCCGATTCCGCTGCTCCGGGGACCTGTACCCTCCGGTGGTTCTTATGTTCTAGCTTTCCGATCACTGGATTCATGGTCAGCCGCTTTCAAGCGTTGCGAAACCCTAATCAAGGACCAGTGCGAGGAAGGTGCTAAAATTGGGTGCGCCGTCTCCGCCTCCAACAACTGTAAGCCGCCGTGGTGGCGGGGATCTGGTGGTGACATGAGGGAACGAGAGAAGTGCGAAGAGCGGGAATTCGAGGGCTGTGTGGCTGCCGCCAAGGGCAAGTGCGCTGCTTTCGCCAAAGACAAGTGCTCTGGTGCCTTTTTAGATGCGCGAATCGCCAAGGACAAGGAGGTTGAGGGATTGGTGTGGCTAGCTTCAATGCCGGAGGAAAGCAGGTGGAGGGATCTCATGGGGCTTGGTGGTTCACTGCGTCTGCACACCAACAACTGCTGCTGCACAGCCAGGGATCTTCTTCTTAAACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.16

Weight (kDa)

5.59

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63390
fragaria_vesca	FvH4_2g22890 FvH4_2g22890 FvH4_2g22890
malus_domestica	MD03G1257200.v1.1 MD11G1277900.v1.1
prunus_persica	Prupe.1G517900_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1
pyrus_communis	pycom03g20390 pycom11g24570
rosa_chinensis	RchiOBHm_Chr6g0289821
rosa_laevigata	RLG00000012265
rosa_multiflora	Rmu_co8501753.1_g000001 Rmu_sc0000062.1_g000022 Rmu_sc0000616.1_g000017 Rmu_sc0002638.1_g000015 Rmu_sc0011921.1_g000014
rosa_roxburghii	Rroxscaffold_7G00177530
rosa_rugosa	Rorug06G0207200
rosa_samantha	Rh1CG355400 Rh3BG119600 Rh4CG249200 Rh6AG318700 Rh6BG325900 Rh6DG317200
rosa_wichuraiana	Rw2G018340 Rw4G013870 Rw5G021300 Rw6G027490 Rw7G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	426
Acc36I	ACCTGC	1 cut(s)	426
AccB1I	GGYRCC	1 cut(s)	356
AccBSI	CCGCTC	1 cut(s)	286
AccII	CGCG	1 cut(s)	373
AciI	CCGC	8 cut(s)	29, 65, 138, 210, 230, 241, 286, 312
AclWI	GGATC	3 cut(s)	253, 453, 516
AcsI	RAATTY	1 cut(s)	290
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	4 cut(s)	92, 121, 166, 178
AgsI	TTSAA	2 cut(s)	145, 420
AjnI	CCWGG	1 cut(s)	503
AluBI	AGCT	2 cut(s)	110, 416
AluI	AGCT	2 cut(s)	110, 416
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	3 cut(s)	253, 453, 516
ApeKI	GCWGC	6 cut(s)	32, 67, 308, 329, 492, 495
ApoI	RAATTY	1 cut(s)	290
AspLEI	GCGC	3 cut(s)	203, 329, 373
AspS9I	GGNCC	2 cut(s)	77, 169
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	266
AsuNHI	GCTAGC	1 cut(s)	412
AvaII	GGWCC	2 cut(s)	77, 169
BanI	GGYRCC	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	353
BbvI	GCAGC	6 cut(s)	19, 54, 295, 316, 479, 482
BceAI	ACGGC	2 cut(s)	188, 217
BcgI	CGANNNNNNTGC	6 cut(s)	49, 83, 167, 201, 258, 292
BciT130I	CCWGG	1 cut(s)	505
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	2 cut(s)	107, 413
BfuAI	ACCTGC	1 cut(s)	426
BglI	GCCNNNNNGGC	1 cut(s)	238
Bme1390I	CCNGG	2 cut(s)	74, 505
Bme18I	GGWCC	2 cut(s)	77, 169
BmgT120I	GGNCC	2 cut(s)	77, 169
BmiI	GGNNCC	2 cut(s)	78, 358
BmrFI	CCNGG	2 cut(s)	74, 505
BmsI	GCATC	1 cut(s)	358
BmtI	GCTAGC	1 cut(s)	416
BpuMI	CCSGG	1 cut(s)	74
BsaJI	CCNNGG	5 cut(s)	73, 233, 315, 381, 504
BsaWI	WCCGGW	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 121, 166, 178
Bse1I	ACTGG	2 cut(s)	126, 172
BseBI	CCWGG	1 cut(s)	505
BseDI	CCNNGG	5 cut(s)	73, 233, 315, 381, 504
BseLI	CCNNNNNNNGG	4 cut(s)	92, 121, 166, 178
BseNI	ACTGG	2 cut(s)	126, 172
BseXI	GCAGC	6 cut(s)	19, 54, 295, 316, 479, 482
BsgI	GTGCAG	2 cut(s)	461, 481
Bsh1236I	CGCG	1 cut(s)	373
Bsh1285I	CGRYCG	1 cut(s)	55
BshNI	GGYRCC	1 cut(s)	356
BsiEI	CGRYCG	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	353
BsiSI	CCGG	3 cut(s)	73, 90, 425
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	4 cut(s)	92, 121, 166, 178
BsmAI	GTCTC	1 cut(s)	211
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	4 cut(s)	116, 245, 445, 508
BspACI	CCGC	8 cut(s)	29, 65, 138, 210, 230, 241, 286, 312
BspFNI	CGCG	1 cut(s)	373
BspLI	GGNNCC	2 cut(s)	78, 358
BspMI	ACCTGC	1 cut(s)	426
BspOI	GCTAGC	1 cut(s)	416
BspPI	GGATC	3 cut(s)	253, 453, 516
BspQI	GCTCTTC	1 cut(s)	276
BspT107I	GGYRCC	1 cut(s)	356
BsrBI	CCGCTC	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	126, 172
BssECI	CCNNGG	5 cut(s)	73, 233, 315, 381, 504
BssMI	GATC	4 cut(s)	116, 245, 445, 508
BssT1I	CCWWGG	2 cut(s)	315, 381
Bst2UI	CCWGG	1 cut(s)	505
Bst4CI	ACNGT	3 cut(s)	43, 56, 224
Bst6I	CTCTTC	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	414
BstDSI	CCRYGG	1 cut(s)	233
BstENI	CCTNNNNNAGG	1 cut(s)	164
BstFNI	CGCG	1 cut(s)	373
BstHHI	GCGC	3 cut(s)	203, 329, 373
BstKTI	GATC	4 cut(s)	119, 248, 448, 511
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	4 cut(s)	116, 245, 445, 508
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 238, 335, 377
BstNI	CCWGG	1 cut(s)	505
BstSCI	CCNGG	2 cut(s)	72, 503
BstUI	CGCG	1 cut(s)	373
BstV1I	GCAGC	6 cut(s)	19, 54, 295, 316, 479, 482
BstX2I	RGATCY	3 cut(s)	245, 445, 508
BstYI	RGATCY	3 cut(s)	245, 445, 508
BtgI	CCRYGG	1 cut(s)	233
BtsI	GCAGTG	1 cut(s)	467
BtsIMutI	CAGTG	3 cut(s)	119, 179, 467
BveI	ACCTGC	1 cut(s)	426
Cac8I	GCNNGC	1 cut(s)	414
CfoI	GCGC	3 cut(s)	203, 329, 373
Cfr13I	GGNCC	2 cut(s)	77, 169
CseI	GACGC	1 cut(s)	461
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	3 cut(s)	129, 259, 451
CviQI	GTAC	1 cut(s)	83
DpnI	GATC	4 cut(s)	118, 247, 447, 510
DpnII	GATC	4 cut(s)	116, 245, 445, 508
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
EciI	GGCGGA	1 cut(s)	199
Eco130I	CCWWGG	2 cut(s)	315, 381
Eco47I	GGWCC	2 cut(s)	77, 169
EcoNI	CCTNNNNNAGG	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	77
EcoRI	GAATTC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	503
EcoT14I	CCWWGG	2 cut(s)	315, 381
ErhI	CCWWGG	2 cut(s)	315, 381
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	3 cut(s)	132, 262, 454
FaiI	YATR	5 cut(s)	102, 130, 260, 452, 526
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	3 cut(s)	128, 258, 450
FauI	CCCGC	2 cut(s)	234, 279
FspBI	CTAG	2 cut(s)	107, 413
GlaI	GCGC	3 cut(s)	202, 328, 372
HapII	CCGG	3 cut(s)	73, 90, 425
HgaI	GACGC	1 cut(s)	461
HhaI	GCGC	3 cut(s)	203, 329, 373
Hin1II	CATG	3 cut(s)	132, 262, 454
Hin6I	GCGC	3 cut(s)	201, 327, 371
HinP1I	GCGC	3 cut(s)	201, 327, 371
HinfI	GANTC	3 cut(s)	61, 125, 375
HpaII	CCGG	3 cut(s)	73, 90, 425
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	1 cut(s)	467
Hpy188I	TCNGA	2 cut(s)	60, 116
Hpy8I	GTNNAC	1 cut(s)	467
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	3 cut(s)	43, 56, 224
HpyCH4V	TGCA	2 cut(s)	478, 498
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 238, 335, 377
Hsp92II	CATG	3 cut(s)	132, 262, 454
HspAI	GCGC	3 cut(s)	201, 327, 371
Kzo9I	GATC	4 cut(s)	116, 245, 445, 508
LguI	GCTCTTC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	75
Lsp1109I	GCAGC	6 cut(s)	19, 54, 295, 316, 479, 482
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	2 cut(s)	107, 413
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	4 cut(s)	118, 247, 447, 510
MbiI	CCGCTC	1 cut(s)	286
MboI	GATC	4 cut(s)	116, 245, 445, 508
MboII	GAAGA	4 cut(s)	20, 293, 503, 506
MflI	RGATCY	3 cut(s)	245, 445, 508
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	2 cut(s)	192, 290
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	9 cut(s)	97, 172, 223, 255, 289, 385, 391, 421, 435
MseI	TTAA	1 cut(s)	519
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	3 cut(s)	73, 90, 425
MspR9I	CCNGG	2 cut(s)	74, 505
MvaI	CCWGG	1 cut(s)	505
MvnI	CGCG	1 cut(s)	373
MwoI	GCNNNNNNNGC	4 cut(s)	209, 238, 335, 377
NciI	CCSGG	1 cut(s)	74
NdeII	GATC	4 cut(s)	116, 245, 445, 508
NheI	GCTAGC	1 cut(s)	412
NlaIII	CATG	3 cut(s)	132, 262, 454
NlaIV	GGNNCC	2 cut(s)	78, 358
NmeAIII	GCCGAG	1 cut(s)	5
NmuCI	GTSAC	1 cut(s)	254
PaqCI	CACCTGC	1 cut(s)	426
PciSI	GCTCTTC	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PfeI	GAWTC	3 cut(s)	61, 125, 375
PpuMI	RGGWCCY	1 cut(s)	77
Psp5II	RGGWCCY	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	503
PspN4I	GGNNCC	2 cut(s)	78, 358
PspPI	GGNCC	2 cut(s)	77, 169
PspPPI	RGGWCCY	1 cut(s)	77
PsuI	RGATCY	3 cut(s)	245, 445, 508
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	519
Sau3AI	GATC	4 cut(s)	116, 245, 445, 508
Sau96I	GGNCC	2 cut(s)	77, 169
ScrFI	CCNGG	2 cut(s)	74, 505
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	6 cut(s)	82, 112, 187, 396, 418, 440
SfaNI	GCATC	1 cut(s)	358
SinI	GGWCC	2 cut(s)	77, 169
Sse9I	AATT	2 cut(s)	192, 290
SsiI	CCGC	8 cut(s)	29, 65, 138, 210, 230, 241, 286, 312
SspMI	CTAG	2 cut(s)	107, 413
StyD4I	CCNGG	2 cut(s)	72, 503
StyI	CCWWGG	2 cut(s)	315, 381
TaaI	ACNGT	3 cut(s)	43, 56, 224
TaqI	TCGA	2 cut(s)	51, 294
TasI	AATT	2 cut(s)	192, 290
TauI	GCSGC	4 cut(s)	32, 140, 232, 314
TfiI	GAWTC	3 cut(s)	61, 125, 375
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	3 cut(s)	126, 179, 474
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	6 cut(s)	32, 67, 308, 329, 492, 495
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	117
TspRI	CASTG	3 cut(s)	126, 179, 474
VpaK11BI	GGWCC	2 cut(s)	77, 169
XagI	CCTNNNNNAGG	1 cut(s)	164
XapI	RAATTY	1 cut(s)	290
XspI	CTAG	2 cut(s)	107, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.