Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003925

Physical Location & Seq

Genomic Coordinates Reverse (-)

16895580 .. 16896203

Gene Structure 624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012265

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCGACCCCGGAACCCAGCAACATCGACGAGGAGCTCTCCGCCGCCTCCACGACCATCTTATTCGACCGCCCCGTCCCCTTGCTCCGCGGGCCGGTCCGGGCCGGCCCGCCCGACGACCCGTCGTCCGGCCCGTACGTGCTGGCATTCCGCGACGCGAAAACCTGGGCCAACGCCTACAGAGCGTGCGAGTCGAAGATCCTACACCAGTGCGAGACCGGGTCGAGAATCGGGTGCGCCCTCAGCGCATCGAGCAAGTGTAAGCCGCCGTGGTGGCGGTTTCTGATTGGGCAGAAAGCGCCGGAGTTGCAGCAGAGGGCGGAGTGCGAGGAGAGAGAGACGGAGGGGTGTTTGGCTACGGCGAAGGAGAAGTGCGTTGGGTTTGGGAGAGACAAGTGCTTGGAGCCGTTTAGGGAGGCTAGGGTTTGTGGGGTGAGTAAGAAACAGGCTGAGAAGATGGTGTGCTGGGCGAGTGTGATCGATAAAAGTAGTACATGGGTGAGTTTGATTGGGTTGGAGAATTGTGGGTTTGGGGCGACGAATTGTAGGGCGGTTGAGCTGGTTGGGTATTCCGGTGAGGTTGATCGGGTTTTAGGTGGTGGCAGTGAGACTTTAAAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

22.49

Weight (kDa)

6.61

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63390
fragaria_vesca	FvH4_2g22890 FvH4_2g22890 FvH4_2g22890
malus_domestica	MD03G1257200.v1.1 MD11G1277900.v1.1
prunus_persica	Prupe.1G517900_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1
pyrus_communis	pycom03g20390 pycom11g24570
rosa_chinensis	RchiOBHm_Chr6g0289821
rosa_laevigata	RLG00000012265
rosa_multiflora	Rmu_co8501753.1_g000001 Rmu_sc0000062.1_g000022 Rmu_sc0000616.1_g000017 Rmu_sc0002638.1_g000015 Rmu_sc0011921.1_g000014
rosa_roxburghii	Rroxscaffold_7G00177530
rosa_rugosa	Rorug06G0207200
rosa_samantha	Rh1CG355400 Rh3BG119600 Rh4CG249200 Rh6AG318700 Rh6BG325900 Rh6DG317200
rosa_wichuraiana	Rw2G018340 Rw4G013870 Rw5G021300 Rw6G027490 Rw7G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AccII	CGCG	3 cut(s)	90, 153, 158
AclWI	GGATC	1 cut(s)	193
AfaI	GTAC	2 cut(s)	137, 493
AfiI	CCNNNNNNNGG	2 cut(s)	94, 128
AhdI	GACNNNNNGTC	2 cut(s)	121, 124
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	2 cut(s)	37, 559
AluI	AGCT	2 cut(s)	37, 559
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	4 cut(s)	209, 332, 384, 602
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	5 cut(s)	92, 102, 106, 130, 168
ApeKI	GCWGC	1 cut(s)	310
AspLEI	GCGC	3 cut(s)	239, 248, 301
AspS9I	GGNCC	6 cut(s)	92, 97, 102, 107, 131, 168
AsuC2I	CCSGG	3 cut(s)	11, 101, 220
AsuHPI	GGTGA	3 cut(s)	445, 511, 587
AvaII	GGWCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	39
BbvCI	CCTCAGC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	2 cut(s)	65, 451
BceAI	ACGGC	3 cut(s)	253, 375, 391
BciT130I	CCWGG	1 cut(s)	166
BcnI	CCSGG	3 cut(s)	11, 101, 220
BcoDI	GTCTC	4 cut(s)	209, 332, 384, 602
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	178
BfoI	RGCGCY	1 cut(s)	302
BglI	GCCNNNNNGGC	1 cut(s)	274
BisI	GCNGC	3 cut(s)	45, 266, 311
BlsI	GCNGC	3 cut(s)	46, 267, 312
Bme1390I	CCNGG	4 cut(s)	11, 101, 166, 220
Bme18I	GGWCC	1 cut(s)	97
BmeRI	GACNNNNNGTC	2 cut(s)	121, 124
BmgT120I	GGNCC	6 cut(s)	92, 97, 102, 107, 131, 168
BmiI	GGNNCC	2 cut(s)	15, 405
BmrFI	CCNGG	4 cut(s)	11, 101, 166, 220
BmsI	GCATC	1 cut(s)	257
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
Bpu10I	CCTNAGC	1 cut(s)	242
BpuMI	CCSGG	3 cut(s)	11, 101, 220
Bsa29I	ATCGAT	1 cut(s)	480
BsaAI	YACGTR	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	4 cut(s)	9, 88, 165, 269
BsaWI	WCCGGW	1 cut(s)	572
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 128
Bse118I	RCCGGY	2 cut(s)	94, 104
Bse1I	ACTGG	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	166
BseCI	ATCGAT	1 cut(s)	480
BseDI	CCNNGG	4 cut(s)	9, 88, 165, 269
BseLI	CCNNNNNNNGG	2 cut(s)	94, 128
BseMII	CTCAG	2 cut(s)	256, 441
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	2 cut(s)	47, 344
BseXI	GCAGC	1 cut(s)	322
BseYI	CCCAGC	2 cut(s)	17, 465
Bsh1236I	CGCG	3 cut(s)	90, 153, 158
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	5 cut(s)	94, 104, 108, 132, 170
BshVI	ATCGAT	1 cut(s)	480
BsiEI	CGRYCG	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	8 cut(s)	11, 95, 100, 105, 129, 219, 302, 573
BsiWI	CGTACG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	94, 128
BsmAI	GTCTC	4 cut(s)	209, 332, 384, 602
BsmBI	CGTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	146
BsnI	GGCC	5 cut(s)	94, 104, 108, 132, 170
Bso31I	GGTCTC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	3 cut(s)	198, 477, 583
BspANI	GGCC	5 cut(s)	94, 104, 108, 132, 170
BspCNI	CTCAG	2 cut(s)	255, 442
BspDI	ATCGAT	1 cut(s)	480
BspFNI	CGCG	3 cut(s)	90, 153, 158
BspLI	GGNNCC	2 cut(s)	15, 405
BspPI	GGATC	1 cut(s)	193
BspTNI	GGTCTC	1 cut(s)	209
BsrFI	RCCGGY	2 cut(s)	94, 104
BsrI	ACTGG	1 cut(s)	208
BssAI	RCCGGY	2 cut(s)	94, 104
BssECI	CCNNGG	4 cut(s)	9, 88, 165, 269
BssMI	GATC	3 cut(s)	198, 477, 583
Bst2UI	CCWGG	1 cut(s)	166
BstBAI	YACGTR	1 cut(s)	139
BstC8I	GCNNGC	5 cut(s)	92, 106, 110, 144, 187
BstDEI	CTNAG	2 cut(s)	242, 450
BstDSI	CCRYGG	2 cut(s)	88, 269
BstFNI	CGCG	3 cut(s)	90, 153, 158
BstH2I	RGCGCY	1 cut(s)	302
BstHHI	GCGC	3 cut(s)	239, 248, 301
BstKTI	GATC	3 cut(s)	201, 480, 586
BstMAI	GTCTC	4 cut(s)	209, 332, 384, 602
BstMBI	GATC	3 cut(s)	198, 477, 583
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	8 cut(s)	91, 182, 243, 245, 252, 274, 298, 307
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	4 cut(s)	9, 99, 164, 218
BstSFI	CTRYAG	1 cut(s)	178
BstUI	CGCG	3 cut(s)	90, 153, 158
BstV1I	GCAGC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
Bsu15I	ATCGAT	1 cut(s)	480
BsuRI	GGCC	5 cut(s)	94, 104, 108, 132, 170
BsuTUI	ATCGAT	1 cut(s)	480
BtgI	CCRYGG	2 cut(s)	88, 269
BtsI	GCAGTG	1 cut(s)	610
BtsIMutI	CAGTG	2 cut(s)	215, 610
Cac8I	GCNNGC	5 cut(s)	92, 106, 110, 144, 187
CfoI	GCGC	3 cut(s)	239, 248, 301
Cfr10I	RCCGGY	2 cut(s)	94, 104
Cfr13I	GGNCC	6 cut(s)	92, 97, 102, 107, 131, 168
Cfr42I	CCGCGG	1 cut(s)	91
ClaI	ATCGAT	1 cut(s)	480
CpoI	CGGWCCG	1 cut(s)	97
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	2 cut(s)	136, 492
CspI	CGGWCCG	1 cut(s)	97
CviAII	CATG	1 cut(s)	495
CviQI	GTAC	2 cut(s)	136, 492
DdeI	CTNAG	2 cut(s)	242, 450
DpnI	GATC	3 cut(s)	200, 479, 585
DpnII	GATC	3 cut(s)	198, 477, 583
DraI	TTTAAA	1 cut(s)	615
DrdI	GACNNNNNNGTC	1 cut(s)	74
DriI	GACNNNNNGTC	2 cut(s)	121, 124
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1105I	GACNNNNNGTC	2 cut(s)	121, 124
EciI	GGCGGA	2 cut(s)	31, 335
Ecl136II	GAGCTC	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	97
Eco53kI	GAGCTC	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	164
EcoT38I	GRGCYC	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	332
FaeI	CATG	1 cut(s)	498
FaiI	YATR	1 cut(s)	496
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	1 cut(s)	494
FauI	CCCGC	2 cut(s)	83, 117
Fnu4HI	GCNGC	3 cut(s)	45, 266, 311
FriOI	GRGCYC	1 cut(s)	39
FseI	GGCCGGCC	1 cut(s)	108
Fsp4HI	GCNGC	3 cut(s)	45, 266, 311
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	3 cut(s)	238, 247, 300
GluI	GCNGC	3 cut(s)	45, 266, 311
GsaI	CCCAGC	2 cut(s)	21, 469
HaeII	RGCGCY	1 cut(s)	302
HaeIII	GGCC	5 cut(s)	94, 104, 108, 132, 170
HapII	CCGG	8 cut(s)	11, 95, 100, 105, 129, 219, 302, 573
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	3 cut(s)	239, 248, 301
Hin1II	CATG	1 cut(s)	498
Hin6I	GCGC	3 cut(s)	237, 246, 299
HinP1I	GCGC	3 cut(s)	237, 246, 299
HinfI	GANTC	2 cut(s)	191, 228
HpaII	CCGG	8 cut(s)	11, 95, 100, 105, 129, 219, 302, 573
HphI	GGTGA	3 cut(s)	445, 511, 587
Hpy188I	TCNGA	1 cut(s)	285
Hpy188III	TCNNGA	1 cut(s)	225
Hpy99I	CGWCG	5 cut(s)	32, 119, 127, 158, 541
HpyAV	CCTTC	1 cut(s)	358
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	1 cut(s)	310
HpyF10VI	GCNNNNNNNGC	8 cut(s)	91, 182, 243, 245, 252, 274, 298, 307
HpyF3I	CTNAG	2 cut(s)	242, 450
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	498
HspAI	GCGC	3 cut(s)	237, 246, 299
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
KspI	CCGCGG	1 cut(s)	91
Kzo9I	GATC	3 cut(s)	198, 477, 583
LmnI	GCTCC	3 cut(s)	34, 90, 403
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	1 cut(s)	138
MalI	GATC	3 cut(s)	200, 479, 585
MboI	GATC	3 cut(s)	198, 477, 583
MboII	GAAGA	2 cut(s)	208, 466
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	2 cut(s)	520, 541
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	8 cut(s)	25, 58, 251, 309, 322, 337, 409, 571
MroNI	GCCGGC	1 cut(s)	104
MseI	TTAA	1 cut(s)	614
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	8 cut(s)	11, 95, 100, 105, 129, 219, 302, 573
MspR9I	CCNGG	4 cut(s)	11, 101, 166, 220
Mva1269I	GAATGC	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	166
MvnI	CGCG	3 cut(s)	90, 153, 158
MwoI	GCNNNNNNNGC	8 cut(s)	91, 182, 243, 245, 252, 274, 298, 307
NaeI	GCCGGC	1 cut(s)	106
NciI	CCSGG	3 cut(s)	11, 101, 220
NdeII	GATC	3 cut(s)	198, 477, 583
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	1 cut(s)	498
NlaIV	GGNNCC	2 cut(s)	15, 405
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 131
PctI	GAATGC	1 cut(s)	146
PdiI	GCCGGC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	228
Pfl23II	CGTACG	1 cut(s)	135
PflFI	GACNNNGTC	1 cut(s)	220
PkrI	GCNGC	3 cut(s)	46, 267, 312
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Ppu21I	YACGTR	1 cut(s)	139
Psp124BI	GAGCTC	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	164
PspFI	CCCAGC	2 cut(s)	17, 465
PspGI	CCWGG	1 cut(s)	164
PspLI	CGTACG	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	15, 405
PspPI	GGNCC	6 cut(s)	92, 97, 102, 107, 131, 168
PsuI	RGATCY	1 cut(s)	198
PsyI	GACNNNGTC	1 cut(s)	220
RigI	GGCCGGCC	1 cut(s)	108
RsaI	GTAC	2 cut(s)	137, 493
RsaNI	GTAC	2 cut(s)	136, 492
Rsr2I	CGGWCCG	1 cut(s)	97
RsrII	CGGWCCG	1 cut(s)	97
SacI	GAGCTC	1 cut(s)	39
SacII	CCGCGG	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	614
SatI	GCNGC	3 cut(s)	45, 266, 311
Sau3AI	GATC	3 cut(s)	198, 477, 583
Sau96I	GGNCC	6 cut(s)	92, 97, 102, 107, 131, 168
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	4 cut(s)	11, 101, 166, 220
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	6 cut(s)	39, 141, 167, 561, 582, 598
SfaNI	GCATC	1 cut(s)	257
SfcI	CTRYAG	1 cut(s)	178
Sfr303I	CCGCGG	1 cut(s)	91
SgrBI	CCGCGG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	97
Sse9I	AATT	2 cut(s)	520, 541
SspMI	CTAG	1 cut(s)	420
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	4 cut(s)	9, 99, 164, 218
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	6 cut(s)	27, 66, 194, 224, 251, 480
TasI	AATT	2 cut(s)	520, 541
TatI	WGTACW	1 cut(s)	491
TauI	GCSGC	2 cut(s)	47, 268
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	1 cut(s)	614
Tru9I	TTAA	1 cut(s)	614
TscAI	CASTG	2 cut(s)	215, 610
TseI	GCWGC	1 cut(s)	310
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	2 cut(s)	215, 610
Tth111I	GACNNNGTC	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	97
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.