Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003925

Physical Location & Seq

Genomic Coordinates Reverse (-)

9878760 .. 9878996

Gene Structure 237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG119600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGACGCCACTGTCTCCCCAACCCCAATTCCCTACCCGAACCCGTCGTCCGGCCCATACGTGCTGGCATTCCACGACCCGAAAACTTGGGCCAAAGCCTACAGAGAGTGCGAGTCCAATATCCTACACCAATGCGAGGTCGGGTCGAGAATCGGGTGCACCATCATGGCATCGAGCATGTGTAAGCCGCTGTGGTGGCGGTTTCTAATTGGGCAAAAAGCATCGGACTTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

78

Amino Acids

8.73

Weight (kDa)

8.42

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63390
fragaria_vesca	FvH4_2g22890 FvH4_2g22890 FvH4_2g22890
malus_domestica	MD03G1257200.v1.1 MD11G1277900.v1.1
prunus_persica	Prupe.1G517900_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1
pyrus_communis	pycom03g20390 pycom11g24570
rosa_chinensis	RchiOBHm_Chr6g0289821
rosa_laevigata	RLG00000012265
rosa_multiflora	Rmu_co8501753.1_g000001 Rmu_sc0000062.1_g000022 Rmu_sc0000616.1_g000017 Rmu_sc0002638.1_g000015 Rmu_sc0011921.1_g000014
rosa_roxburghii	Rroxscaffold_7G00177530
rosa_rugosa	Rorug06G0207200
rosa_samantha	Rh1CG355400 Rh3BG119600 Rh4CG249200 Rh6AG318700 Rh6BG325900 Rh6DG317200
rosa_wichuraiana	Rw2G018340 Rw4G013870 Rw5G021300 Rw6G027490 Rw7G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	11
AciI	CCGC	2 cut(s)	188, 199
AcyI	GRCGYC	1 cut(s)	6
AfiI	CCNNNNNNNGG	2 cut(s)	50, 136
AgsI	TTSAA	1 cut(s)	232
AloI	GAACNNNNNNTCC	2 cut(s)	32, 64
Alw21I	GWGCWC	1 cut(s)	161
Alw26I	GTCTC	1 cut(s)	19
Alw44I	GTGCAC	1 cut(s)	157
AoxI	GGCC	2 cut(s)	52, 90
ApaLI	GTGCAC	1 cut(s)	157
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
AspS9I	GGNCC	2 cut(s)	53, 90
BaeGI	GKGCMC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	161
BccI	CCATC	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	19
BfmI	CTRYAG	1 cut(s)	100
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
BmgT120I	GGNCC	2 cut(s)	53, 90
BmsI	GCATC	2 cut(s)	179, 230
BsaAI	YACGTR	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 136
BseLI	CCNNNNNNNGG	2 cut(s)	50, 136
BseSI	GKGCMC	1 cut(s)	161
BshFI	GGCC	2 cut(s)	54, 92
BsiHKAI	GWGCWC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	51
BslI	CCNNNNNNNGG	2 cut(s)	50, 136
BsmAI	GTCTC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	54, 92
Bsp1286I	GDGCHC	1 cut(s)	161
BspACI	CCGC	2 cut(s)	188, 199
BspANI	GGCC	2 cut(s)	54, 92
BssNI	GRCGYC	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	13
BstACI	GRCGYC	1 cut(s)	6
BstBAI	YACGTR	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstNSI	RCATGY	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	100
BstSLI	GKGCMC	1 cut(s)	161
BsuRI	GGCC	2 cut(s)	54, 92
BtsIMutI	CAGTG	1 cut(s)	9
Cac8I	GCNNGC	1 cut(s)	66
Cfr13I	GGNCC	2 cut(s)	53, 90
CseI	GACGC	1 cut(s)	14
CviAII	CATG	2 cut(s)	166, 178
CviJI	RGCY	4 cut(s)	54, 92, 98, 187
CviKI_1	RGCY	4 cut(s)	54, 92, 98, 187
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
FaeI	CATG	2 cut(s)	169, 181
FaiI	YATR	3 cut(s)	58, 167, 179
FatI	CATG	2 cut(s)	165, 177
Fnu4HI	GCNGC	1 cut(s)	188
Fsp4HI	GCNGC	1 cut(s)	188
GluI	GCNGC	1 cut(s)	188
HaeIII	GGCC	2 cut(s)	54, 92
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	169, 181
HinfI	GANTC	2 cut(s)	113, 150
HpaII	CCGG	1 cut(s)	51
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	1 cut(s)	147
Hpy8I	GTNNAC	1 cut(s)	159
Hpy99I	CGWCG	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	2 cut(s)	169, 181
LpnPI	CCDG	2 cut(s)	50, 64
LweI	GCATC	2 cut(s)	179, 230
MaeII	ACGT	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	2 cut(s)	27, 207
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	1 cut(s)	130
MslI	CAYNNNNRTG	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	190
MspI	CCGG	1 cut(s)	51
Mva1269I	GAATGC	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	196
NlaIII	CATG	2 cut(s)	169, 181
NspI	RCATGY	1 cut(s)	181
PctI	GAATGC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	189
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
Ppu21I	YACGTR	1 cut(s)	61
PspPI	GGNCC	2 cut(s)	53, 90
RseI	CAYNNNNRTG	1 cut(s)	164
SatI	GCNGC	1 cut(s)	188
Sau96I	GGNCC	2 cut(s)	53, 90
SchI	GAGTC	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	2 cut(s)	63, 141
SfaNI	GCATC	2 cut(s)	179, 230
SfcI	CTRYAG	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	27, 207
SsiI	CCGC	2 cut(s)	188, 199
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	2 cut(s)	146, 173
TasI	AATT	2 cut(s)	27, 207
TauI	GCSGC	1 cut(s)	190
TfiI	GAWTC	1 cut(s)	150
TscAI	CASTG	1 cut(s)	16
TspRI	CASTG	1 cut(s)	16
VneI	GTGCAC	1 cut(s)	157
XceI	RCATGY	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.