Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011921.1

Orthogroup ID

OG0003925

Physical Location & Seq

Genomic Coordinates Reverse (-)

64939 .. 65187

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011921.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

atggacgccactgtccccccagccccaatccccgaccagaacctgttgtccggcccatacgtgcaggcattccgtgacccgaaaacctgggccaaagcctacagagagtgcgagtccaatatcctacaccaatgcgaggtcgggtcgagaatcgggtgcgccatcatcacatcgagcaagtgtaagctgtcgtggtggcagtttctgattgggcaaaaagcaccggacttgaagcagaggacagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

82

Amino Acids

9.23

Weight (kDa)

8.42

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63390
fragaria_vesca	FvH4_2g22890 FvH4_2g22890 FvH4_2g22890
malus_domestica	MD03G1257200.v1.1 MD11G1277900.v1.1
prunus_persica	Prupe.1G517900_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1
pyrus_communis	pycom03g20390 pycom11g24570
rosa_chinensis	RchiOBHm_Chr6g0289821
rosa_laevigata	RLG00000012265
rosa_multiflora	Rmu_co8501753.1_g000001 Rmu_sc0000062.1_g000022 Rmu_sc0000616.1_g000017 Rmu_sc0002638.1_g000015 Rmu_sc0011921.1_g000014
rosa_roxburghii	Rroxscaffold_7G00177530
rosa_rugosa	Rorug06G0207200
rosa_samantha	Rh1CG355400 Rh3BG119600 Rh4CG249200 Rh6AG318700 Rh6BG325900 Rh6DG317200
rosa_wichuraiana	Rw2G018340 Rw4G013870 Rw5G021300 Rw6G027490 Rw7G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	11
AcyI	GRCGYC	1 cut(s)	6
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	86
AloI	GAACNNNNNNTCC	2 cut(s)	32, 64
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
AlwNI	CAGNNNCTG	2 cut(s)	43, 205
AoxI	GGCC	2 cut(s)	52, 90
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	2 cut(s)	53, 90
BccI	CCATC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	88
BfmI	CTRYAG	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	88
BmgT120I	GGNCC	2 cut(s)	53, 90
BmrFI	CCNGG	1 cut(s)	88
BsaAI	YACGTR	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	87
BsaWI	WCCGGW	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseYI	CCCAGC	1 cut(s)	19
BsgI	GTGCAG	1 cut(s)	83
BshFI	GGCC	2 cut(s)	54, 92
BsiSI	CCGG	2 cut(s)	51, 224
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	54, 92
BspANI	GGCC	2 cut(s)	54, 92
BssECI	CCNNGG	1 cut(s)	87
BssNI	GRCGYC	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	1 cut(s)	13
BstACI	GRCGYC	1 cut(s)	6
BstBAI	YACGTR	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	161
BstNI	CCWGG	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	54, 92
BtsIMutI	CAGTG	1 cut(s)	9
Cac8I	GCNNGC	1 cut(s)	66
CaiI	CAGNNNCTG	2 cut(s)	43, 205
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	2 cut(s)	53, 90
CseI	GACGC	1 cut(s)	14
CviJI	RGCY	5 cut(s)	23, 54, 92, 98, 187
CviKI_1	RGCY	5 cut(s)	23, 54, 92, 98, 187
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	86
FaiI	YATR	1 cut(s)	58
GlaI	GCGC	1 cut(s)	160
GsaI	CCCAGC	1 cut(s)	23
HaeIII	GGCC	2 cut(s)	54, 92
HapII	CCGG	2 cut(s)	51, 224
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	161
Hin1I	GRCGYC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	2 cut(s)	113, 150
HpaII	CCGG	2 cut(s)	51, 224
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	1 cut(s)	147
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	1 cut(s)	64
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	1 cut(s)	6
HspAI	GCGC	1 cut(s)	159
LpnPI	CCDG	8 cut(s)	33, 50, 50, 56, 64, 73, 100, 237
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	74
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	2 cut(s)	130, 231
MspI	CCGG	2 cut(s)	51, 224
MspR9I	CCNGG	1 cut(s)	88
Mva1269I	GAATGC	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	74
PctI	GAATGC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	150
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
Ppu21I	YACGTR	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	86
PspPI	GGNCC	2 cut(s)	53, 90
PstNI	CAGNNNCTG	2 cut(s)	43, 205
Sau96I	GGNCC	2 cut(s)	53, 90
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	88
SetI	ASST	5 cut(s)	45, 63, 89, 141, 189
SfcI	CTRYAG	1 cut(s)	100
StyD4I	CCNGG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	2 cut(s)	146, 173
TfiI	GAWTC	1 cut(s)	150
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	74
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.