Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002638.1

Orthogroup ID

OG0003925

Physical Location & Seq

Genomic Coordinates Reverse (-)

56252 .. 57105

Gene Structure 854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002638.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atggacgccactgtctccccagccccaatccccgacccgaatccgtcgtccgacccatacgtgctggcattcagcgacccgaaaacctgggccaaagccttcagagagtgcgagtccgatatcctacaccaatgcgaggtcgggtcgagaatcgggtgcgccatcatcgcatcgagcaagtgtaagccgccgtggtggcggtttctgattgggcaaaaagcaccggacttgaagcagaggacggagtgcgaggagagagagacggaggggtgtttggctccgaattgtagggcgggtgggctggttggttgttccagtgaggttgatcgggttttaggtggtggcagtttggaggagaagaagaacgagaaaggtttggaggaggaagatgtggaagacgaggagggcttgaagggatccgaggaggagttggaaaatgaagaagattcgaattcgaatcaggatttggaagaggaatcggatgaagattctgatgatgatgatgtggaggcggtgggcggtggcggaggggaaaatggaggtggcggtggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

19.68

Weight (kDa)

4.1

Isoelectric Point (pI)

59.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63390
fragaria_vesca	FvH4_2g22890 FvH4_2g22890 FvH4_2g22890
malus_domestica	MD03G1257200.v1.1 MD11G1277900.v1.1
prunus_persica	Prupe.1G517900_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1
pyrus_communis	pycom03g20390 pycom11g24570
rosa_chinensis	RchiOBHm_Chr6g0289821
rosa_laevigata	RLG00000012265
rosa_multiflora	Rmu_co8501753.1_g000001 Rmu_sc0000062.1_g000022 Rmu_sc0000616.1_g000017 Rmu_sc0002638.1_g000015 Rmu_sc0011921.1_g000014
rosa_roxburghii	Rroxscaffold_7G00177530
rosa_rugosa	Rorug06G0207200
rosa_samantha	Rh1CG355400 Rh3BG119600 Rh4CG249200 Rh6AG318700 Rh6BG325900 Rh6DG317200
rosa_wichuraiana	Rw2G018340 Rw4G013870 Rw5G021300 Rw6G027490 Rw7G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	11
AciI	CCGC	7 cut(s)	188, 199, 293, 512, 519, 525, 546
AclWI	GGATC	2 cut(s)	411, 424
AcsI	RAATTY	1 cut(s)	451
AcuI	CTGAAG	1 cut(s)	85
AcyI	GRCGYC	1 cut(s)	6
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	2 cut(s)	232, 412
AjnI	CCWGG	1 cut(s)	86
AjuI	GAANNNNNNNTTGG	2 cut(s)	449, 481
Alw26I	GTCTC	2 cut(s)	19, 254
AlwI	GGATC	2 cut(s)	411, 424
AoxI	GGCC	1 cut(s)	90
ApoI	RAATTY	1 cut(s)	451
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	90
AsuII	TTCGAA	2 cut(s)	449, 455
BamHI	GGATCC	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	402
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	175
BciT130I	CCWGG	1 cut(s)	88
BcoDI	GTCTC	2 cut(s)	19, 254
BglI	GCCNNNNNGGC	1 cut(s)	196
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	90
BmiI	GGNNCC	2 cut(s)	279, 418
BmrFI	CCNGG	1 cut(s)	88
BmsI	GCATC	1 cut(s)	179
BpiI	GAAGAC	1 cut(s)	402
Bpu14I	TTCGAA	2 cut(s)	449, 455
BsaAI	YACGTR	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	3 cut(s)	87, 191, 420
BsaWI	WCCGGW	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	3 cut(s)	87, 191, 420
BseGI	GGATG	1 cut(s)	487
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseNI	ACTGG	1 cut(s)	315
BseRI	GAGGAG	6 cut(s)	266, 368, 395, 416, 437, 440
BseYI	CCCAGC	1 cut(s)	19
BshFI	GGCC	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	2 cut(s)	19, 254
BsmBI	CGTCTC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	92
Bsp119I	TTCGAA	2 cut(s)	449, 455
Bsp143I	GATC	2 cut(s)	325, 416
BspACI	CCGC	7 cut(s)	188, 199, 293, 512, 519, 525, 546
BspANI	GGCC	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	279, 418
BspPI	GGATC	2 cut(s)	411, 424
BspT104I	TTCGAA	2 cut(s)	449, 455
BsrI	ACTGG	1 cut(s)	315
BssECI	CCNNGG	3 cut(s)	87, 191, 420
BssMI	GATC	2 cut(s)	325, 416
BssNI	GRCGYC	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	465
BstACI	GRCGYC	1 cut(s)	6
BstBAI	YACGTR	1 cut(s)	61
BstBI	TTCGAA	2 cut(s)	449, 455
BstC8I	GCNNGC	1 cut(s)	66
BstDSI	CCRYGG	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	487
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	2 cut(s)	328, 419
BstMAI	GTCTC	2 cut(s)	19, 254
BstMBI	GATC	2 cut(s)	325, 416
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 196
BstNI	CCWGG	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	92
BtgI	CCRYGG	1 cut(s)	191
BtgZI	GCGATG	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	487
BtsIMutI	CAGTG	2 cut(s)	9, 322
Cac8I	GCNNGC	1 cut(s)	66
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	90
CseI	GACGC	1 cut(s)	14
CviJI	RGCY	8 cut(s)	23, 92, 98, 187, 278, 301, 408, 552
CviKI_1	RGCY	8 cut(s)	23, 92, 98, 187, 278, 301, 408, 552
DpnI	GATC	2 cut(s)	327, 418
DpnII	GATC	2 cut(s)	325, 416
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
EciI	GGCGGA	1 cut(s)	540
Eco32I	GATATC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	85
EcoRI	GAATTC	1 cut(s)	451
EcoRII	CCWGG	1 cut(s)	86
EcoRV	GATATC	1 cut(s)	121
Esp3I	CGTCTC	1 cut(s)	254
FaiI	YATR	1 cut(s)	58
FauI	CCCGC	1 cut(s)	286
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	1 cut(s)	494
Fsp4HI	GCNGC	1 cut(s)	188
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	1 cut(s)	188
GsaI	CCCAGC	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	1 cut(s)	224
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	161
Hin1I	GRCGYC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	7 cut(s)	40, 113, 150, 446, 457, 476, 488
HpaII	CCGG	1 cut(s)	224
Hpy188I	TCNGA	8 cut(s)	52, 104, 118, 207, 282, 421, 481, 493
Hpy188III	TCNNGA	2 cut(s)	147, 461
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	2 cut(s)	109, 406
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	60
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 196
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	1 cut(s)	6
HspAI	GCGC	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	325, 416
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	8 cut(s)	33, 50, 73, 100, 237, 287, 328, 446
LweI	GCATC	1 cut(s)	179
MaeII	ACGT	1 cut(s)	60
MalI	GATC	2 cut(s)	327, 418
MboI	GATC	2 cut(s)	325, 416
MboII	GAAGA	8 cut(s)	370, 373, 398, 407, 452, 455, 482, 497
MflI	RGATCY	1 cut(s)	416
MluCI	AATT	2 cut(s)	283, 451
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	2 cut(s)	75, 411
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	88
Mva1269I	GAATGC	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	88
MwoI	GCNNNNNNNGC	2 cut(s)	167, 196
NdeII	GATC	2 cut(s)	325, 416
NlaIV	GGNNCC	2 cut(s)	279, 418
NspV	TTCGAA	2 cut(s)	449, 455
PctI	GAATGC	1 cut(s)	68
PfeI	GAWTC	6 cut(s)	40, 150, 446, 457, 476, 488
PkrI	GCNGC	1 cut(s)	189
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
Ppu21I	YACGTR	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	2 cut(s)	279, 418
PspPI	GGNCC	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	416
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	2 cut(s)	325, 416
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	88
SetI	ASST	7 cut(s)	63, 89, 141, 324, 340, 376, 544
SfaNI	GCATC	1 cut(s)	179
SfuI	TTCGAA	2 cut(s)	449, 455
Sse9I	AATT	2 cut(s)	283, 451
SsiI	CCGC	7 cut(s)	188, 199, 293, 512, 519, 525, 546
StyD4I	CCNGG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	4 cut(s)	146, 173, 449, 455
TasI	AATT	2 cut(s)	283, 451
TauI	GCSGC	1 cut(s)	190
TfiI	GAWTC	6 cut(s)	40, 150, 446, 457, 476, 488
TscAI	CASTG	2 cut(s)	16, 322
TspDTI	ATGAA	2 cut(s)	453, 498
TspGWI	ACGGA	3 cut(s)	33, 257, 278
TspRI	CASTG	2 cut(s)	16, 322
XapI	RAATTY	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.