Rorug06G0207200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003925
Physical Location & Seq
Forward (+)
33047896 .. 33048231
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0207200.1

Sequence Viewer

Length: 336 bp
ATGGGAAAAATGGGACATTGCCTATGGATTTATAAGGGTTTGGGCCACTTCATCCATTGCCAATTGGTTTTGGATGTGAACCCCAGATTACTTTATCATGGTATCAGAGCGGGTTACCCACGTGTGCATGCCTCACGGCCACACGGGCTCCACGTCACCCAAAGTTGTCCACGTGTATGGCTTGAAAATTCGCCACATGTGCGGGGGCGTGTTGAGAATATATACATCCCACATGGGAAAAATGGGACCTTTTGTCTATGGGTTTATAAGGATTTGGGCCACTCTATCCATTGCCAATTGATTTTGGATGTGAACTCCAGATTACTTTATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.85

Weight (kDa)

9.47

Isoelectric Point (pI)

34.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 33, 267
AccBSI CCGCTC 1 cut(s) 110
AciI CCGC 2 cut(s) 110, 202
AcoI YGGCCR 1 cut(s) 137
AcsI RAATTY 1 cut(s) 187
AcvI CACGTG 2 cut(s) 122, 173
AflIII ACRYGT 3 cut(s) 121, 172, 196
AgsI TTSAA 1 cut(s) 185
AhdI GACNNNNNGTC 1 cut(s) 252
AjiI CACGTC 1 cut(s) 154
AoxI GGCC 3 cut(s) 43, 137, 277
ApoI RAATTY 1 cut(s) 187
AspS9I GGNCC 3 cut(s) 43, 246, 277
AsuHPI GGTGA 1 cut(s) 148
AvaII GGWCC 1 cut(s) 246
BanII GRGCYC 1 cut(s) 150
BbrPI CACGTG 2 cut(s) 122, 173
BceAI ACGGC 1 cut(s) 152
BglI GCCNNNNNGGC 1 cut(s) 145
Bme18I GGWCC 1 cut(s) 246
BmeRI GACNNNNNGTC 1 cut(s) 252
BmgBI CACGTC 1 cut(s) 154
BmgT120I GGNCC 3 cut(s) 43, 246, 277
BmiI GGNNCC 2 cut(s) 149, 247
BpmI CTGGAG 1 cut(s) 301
BsaAI YACGTR 2 cut(s) 122, 173
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bse3DI GCAATG 3 cut(s) 16, 55, 289
BseGI GGATG 4 cut(s) 51, 79, 225, 313
BseMI GCAATG 3 cut(s) 16, 55, 289
BshFI GGCC 3 cut(s) 45, 139, 279
BslFI GGGAC 2 cut(s) 27, 259
BsmFI GGGAC 2 cut(s) 27, 259
BsnI GGCC 3 cut(s) 45, 139, 279
Bsp1286I GDGCHC 1 cut(s) 150
BspACI CCGC 2 cut(s) 110, 202
BspANI GGCC 3 cut(s) 45, 139, 279
BspLI GGNNCC 2 cut(s) 149, 247
BsrBI CCGCTC 1 cut(s) 110
BsrDI GCAATG 3 cut(s) 16, 55, 289
BstBAI YACGTR 2 cut(s) 122, 173
BstC8I GCNNGC 1 cut(s) 129
BstEII GGTNACC 1 cut(s) 113
BstF5I GGATG 4 cut(s) 51, 79, 225, 313
BstMWI GCNNNNNNNGC 2 cut(s) 145, 199
BstNSI RCATGY 2 cut(s) 131, 200
BstPI GGTNACC 1 cut(s) 113
BstXI CCANNNNNNTGG 1 cut(s) 177
BsuRI GGCC 3 cut(s) 45, 139, 279
BtrI CACGTC 1 cut(s) 154
BtsCI GGATG 4 cut(s) 51, 79, 225, 313
Cac8I GCNNGC 1 cut(s) 129
Cfr13I GGNCC 3 cut(s) 43, 246, 277
CviAII CATG 4 cut(s) 98, 128, 197, 233
CviJI RGCY 5 cut(s) 45, 139, 148, 181, 279
CviKI_1 RGCY 5 cut(s) 45, 139, 148, 181, 279
DriI GACNNNNNGTC 1 cut(s) 252
EaeI YGGCCR 1 cut(s) 137
Eam1105I GACNNNNNGTC 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 246
Eco72I CACGTG 2 cut(s) 122, 173
Eco91I GGTNACC 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 246
EcoO65I GGTNACC 1 cut(s) 113
EcoT38I GRGCYC 1 cut(s) 150
FaeI CATG 4 cut(s) 101, 131, 200, 236
FaqI GGGAC 2 cut(s) 27, 259
FatI CATG 4 cut(s) 97, 127, 196, 232
FauI CCCGC 2 cut(s) 103, 195
FokI GGATG 4 cut(s) 38, 86, 212, 320
FriOI GRGCYC 1 cut(s) 150
GsuI CTGGAG 1 cut(s) 301
HaeIII GGCC 3 cut(s) 45, 139, 279
Hin1II CATG 4 cut(s) 101, 131, 200, 236
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 3 cut(s) 79, 170, 313
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 1 cut(s) 318
Hpy8I GTNNAC 3 cut(s) 79, 170, 313
HpyCH4IV ACGT 3 cut(s) 121, 153, 172
HpyCH4V TGCA 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 199
HpySE526I ACGT 3 cut(s) 121, 153, 172
Hsp92II CATG 4 cut(s) 101, 131, 200, 236
LmnI GCTCC 1 cut(s) 153
LpnPI CCDG 2 cut(s) 97, 331
MaeII ACGT 3 cut(s) 121, 153, 172
MaeIII GTNAC 2 cut(s) 113, 154
MbiI CCGCTC 1 cut(s) 110
MfeI CAATTG 2 cut(s) 62, 296
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 3 cut(s) 62, 187, 296
MnlI CCTC 1 cut(s) 142
MslI CAYNNNNRTG 1 cut(s) 175
MunI CAATTG 2 cut(s) 62, 296
MwoI GCNNNNNNNGC 2 cut(s) 145, 199
NlaIII CATG 4 cut(s) 101, 131, 200, 236
NlaIV GGNNCC 2 cut(s) 149, 247
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 2 cut(s) 131, 200
PaeI GCATGC 1 cut(s) 131
PciI ACATGT 1 cut(s) 196
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PmaCI CACGTG 2 cut(s) 122, 173
PmlI CACGTG 2 cut(s) 122, 173
Ppu21I YACGTR 2 cut(s) 122, 173
PpuMI RGGWCCY 1 cut(s) 246
PscI ACATGT 1 cut(s) 196
PsiI TTATAA 2 cut(s) 33, 267
Psp5II RGGWCCY 1 cut(s) 246
PspCI CACGTG 2 cut(s) 122, 173
PspEI GGTNACC 1 cut(s) 113
PspN4I GGNNCC 2 cut(s) 149, 247
PspPI GGNCC 3 cut(s) 43, 246, 277
PspPPI RGGWCCY 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 175
Sau96I GGNCC 3 cut(s) 43, 246, 277
SduI GDGCHC 1 cut(s) 150
SetI ASST 4 cut(s) 124, 156, 175, 251
SinI GGWCC 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 175
SphI GCATGC 1 cut(s) 131
Sse9I AATT 3 cut(s) 62, 187, 296
SsiI CCGC 2 cut(s) 110, 202
TaiI ACGT 3 cut(s) 124, 156, 175
TasI AATT 3 cut(s) 62, 187, 296
TseFI GTSAC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 246
XapI RAATTY 1 cut(s) 187
XceI RCATGY 2 cut(s) 131, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.