Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003925

Physical Location & Seq

Genomic Coordinates Forward (+)

20880690 .. 20882186

Gene Structure 1497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g20390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCGGCTTCGGAATCGAACCATATCGACGAGCATTCAGCCGCTGCAACAACCATACAATTCGACCGTCCGGTCCCATTACTCCGCGGACCGGTTCGGGCAAGCCGAACCGATGACCCGTCCTGCGGTCCGTACGTCCTGGCGTTTCGAGACCCAAAGGCTTGGGCAAACGCGTACAGAGCCTGCAAGTCCAAGATGGTGGAGCAGTGCGAGGCCGGCGCAAGGATCGGTTGCGCCATCAGCGGATCCGAAAAGTGTAAGCCCCCGTGGTGGCAAGCTTTGATTGGTCAGAAAGCGCCGGATTTCAAACAGAGGGAGCAGTGCGAGGAGAGAGAAATGGAGGGTTGTTTGACGGCGGCAAAAGAGAAGTGCGGCGGGTTTGCGAAGGAGAAGTGCATGAAGCCCTTCAGAGAAGCGAGGATTGCAGGCGTGAACGTGAAACAGGCTGAGAGATTGGTGTGCTGGGGGACTGTGGCGGATCGGAGTACGTGGGTCAATTTGATTGGATTGGACAAATTGGGGATTTCGGGTTCTACCACGAATTATAGGGCTGGTGAGTTGTTTGGTTTGGATTGTGAGGTTGATGGAGTTTTGGGCGGTGAGAATTTGACACTGAAGCTTGAATGTTACTTTGTAATTGATTTAATTGAGCTTGAATGCACAATGTTCTTAGGGTGGTACTGCATTCAGTTTACATGGATGGCACTCGGGGTTCGTTGGGCCGAAAGAGCCGAAATTAAACCCTCATTTTTAGTACTAACTTTGACCTTGGTTGAACATCAATACAAACAAAAAACTTTAGGCCCAAATATTAAACAGTTTAGGGCATCTTGTACCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

31.21

Weight (kDa)

7.85

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63390
fragaria_vesca	FvH4_2g22890 FvH4_2g22890 FvH4_2g22890
malus_domestica	MD03G1257200.v1.1 MD11G1277900.v1.1
prunus_persica	Prupe.1G517900_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1
pyrus_communis	pycom03g20390 pycom11g24570
rosa_chinensis	RchiOBHm_Chr6g0289821
rosa_laevigata	RLG00000012265
rosa_multiflora	Rmu_co8501753.1_g000001 Rmu_sc0000062.1_g000022 Rmu_sc0000616.1_g000017 Rmu_sc0002638.1_g000015 Rmu_sc0011921.1_g000014
rosa_roxburghii	Rroxscaffold_7G00177530
rosa_rugosa	Rorug06G0207200
rosa_samantha	Rh1CG355400 Rh3BG119600 Rh4CG249200 Rh6AG318700 Rh6BG325900 Rh6DG317200
rosa_wichuraiana	Rw2G018340 Rw4G013870 Rw5G021300 Rw6G027490 Rw7G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AccII	CGCG	2 cut(s)	87, 173
AclWI	GGATC	4 cut(s)	233, 240, 253, 486
AcsI	RAATTY	1 cut(s)	604
AcuI	CTGAAG	2 cut(s)	391, 635
AfaI	GTAC	6 cut(s)	134, 176, 487, 680, 756, 835
AfiI	CCNNNNNNNGG	4 cut(s)	91, 125, 222, 270
AflIII	ACRYGT	1 cut(s)	171
AgeI	ACCGGT	1 cut(s)	91
AgsI	TTSAA	4 cut(s)	307, 623, 656, 776
AjnI	CCWGG	1 cut(s)	138
AloI	GAACNNNNNNTCC	2 cut(s)	514, 546
AluBI	AGCT	3 cut(s)	278, 619, 652
AluI	AGCT	3 cut(s)	278, 619, 652
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	4 cut(s)	233, 240, 253, 486
AlwNI	CAGNNNCTG	2 cut(s)	44, 183
Ama87I	CYCGRG	1 cut(s)	707
AoxI	GGCC	3 cut(s)	213, 720, 802
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	1 cut(s)	604
AsiGI	ACCGGT	1 cut(s)	91
Asp700I	GAANNNNTTC	1 cut(s)	404
AspLEI	GCGC	3 cut(s)	221, 236, 298
AspS9I	GGNCC	5 cut(s)	73, 89, 128, 720, 803
AsuHPI	GGTGA	2 cut(s)	566, 611
AvaI	CYCGRG	1 cut(s)	707
AvaII	GGWCC	3 cut(s)	73, 89, 128
BamHI	GGATCC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	4 cut(s)	190, 245, 578, 694
BceAI	ACGGC	1 cut(s)	369
BciT130I	CCWGG	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	144
BfoI	RGCGCY	1 cut(s)	299
BisI	GCNGC	5 cut(s)	6, 42, 45, 357, 373
BlsI	GCNGC	5 cut(s)	7, 43, 46, 358, 374
BmcAI	AGTACT	1 cut(s)	756
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	3 cut(s)	73, 89, 128
BmeT110I	CYCGRG	1 cut(s)	707
BmgT120I	GGNCC	5 cut(s)	73, 89, 128, 720, 803
BmiI	GGNNCC	2 cut(s)	75, 247
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	836
BsaAI	YACGTR	1 cut(s)	489
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	85, 266, 768
BsaWI	WCCGGW	2 cut(s)	70, 91
Bsc4I	CCNNNNNNNGG	4 cut(s)	91, 125, 222, 270
Bse118I	RCCGGY	2 cut(s)	91, 215
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	3 cut(s)	85, 266, 768
BseGI	GGATG	1 cut(s)	705
BseLI	CCNNNNNNNGG	4 cut(s)	91, 125, 222, 270
BseMII	CTCAG	1 cut(s)	438
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	31
BseYI	CCCAGC	1 cut(s)	462
Bsh1236I	CGCG	2 cut(s)	87, 173
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	3 cut(s)	215, 722, 804
BshTI	ACCGGT	1 cut(s)	91
BsiEI	CGRYCG	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	707
BsiSI	CCGG	4 cut(s)	71, 92, 216, 299
BsiWI	CGTACG	1 cut(s)	132
BslFI	GGGAC	2 cut(s)	59, 481
BslI	CCNNNNNNNGG	4 cut(s)	91, 125, 222, 270
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	2 cut(s)	59, 481
BsmI	GAATGC	3 cut(s)	34, 662, 684
BsnI	GGCC	3 cut(s)	215, 722, 804
Bso31I	GGTCTC	1 cut(s)	144
BsoBI	CYCGRG	1 cut(s)	707
Bsp143I	GATC	3 cut(s)	225, 245, 478
BspANI	GGCC	3 cut(s)	215, 722, 804
BspCNI	CTCAG	1 cut(s)	439
BspFNI	CGCG	2 cut(s)	87, 173
BspLI	GGNNCC	2 cut(s)	75, 247
BspPI	GGATC	4 cut(s)	233, 240, 253, 486
BspTNI	GGTCTC	1 cut(s)	144
BsrFI	RCCGGY	2 cut(s)	91, 215
BssAI	RCCGGY	2 cut(s)	91, 215
BssECI	CCNNGG	3 cut(s)	85, 266, 768
BssMI	GATC	3 cut(s)	225, 245, 478
BssT1I	CCWWGG	1 cut(s)	768
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	3 cut(s)	68, 472, 819
BstBAI	YACGTR	1 cut(s)	489
BstC8I	GCNNGC	5 cut(s)	103, 184, 217, 276, 427
BstDEI	CTNAG	2 cut(s)	447, 670
BstDSI	CCRYGG	2 cut(s)	85, 266
BstF5I	GGATG	1 cut(s)	705
BstFNI	CGCG	2 cut(s)	87, 173
BstH2I	RGCGCY	1 cut(s)	299
BstHHI	GCGC	3 cut(s)	221, 236, 298
BstKTI	GATC	3 cut(s)	228, 248, 481
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	3 cut(s)	225, 245, 478
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	5 cut(s)	179, 216, 240, 422, 728
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	138
BstUI	CGCG	2 cut(s)	87, 173
BstV1I	GCAGC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	245
BstXI	CCANNNNNNTGG	2 cut(s)	162, 199
BstYI	RGATCY	1 cut(s)	245
BsuRI	GGCC	3 cut(s)	215, 722, 804
BtgI	CCRYGG	2 cut(s)	85, 266
BtsCI	GGATG	1 cut(s)	705
BtsI	GCAGTG	2 cut(s)	212, 326
BtsIMutI	CAGTG	3 cut(s)	212, 326, 611
Cac8I	GCNNGC	5 cut(s)	103, 184, 217, 276, 427
CaiI	CAGNNNCTG	2 cut(s)	44, 183
CfoI	GCGC	3 cut(s)	221, 236, 298
Cfr10I	RCCGGY	2 cut(s)	91, 215
Cfr13I	GGNCC	5 cut(s)	73, 89, 128, 720, 803
Cfr42I	CCGCGG	1 cut(s)	88
CpoI	CGGWCCG	2 cut(s)	89, 128
Csp6I	GTAC	6 cut(s)	133, 175, 486, 679, 755, 834
CspAI	ACCGGT	1 cut(s)	91
CspI	CGGWCCG	2 cut(s)	89, 128
CviAII	CATG	2 cut(s)	397, 696
CviQI	GTAC	6 cut(s)	133, 175, 486, 679, 755, 834
DdeI	CTNAG	2 cut(s)	447, 670
DpnI	GATC	3 cut(s)	227, 247, 480
DpnII	GATC	3 cut(s)	225, 245, 478
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
EciI	GGCGGA	1 cut(s)	491
Eco130I	CCWWGG	1 cut(s)	768
Eco31I	GGTCTC	1 cut(s)	144
Eco47I	GGWCC	3 cut(s)	73, 89, 128
Eco57I	CTGAAG	2 cut(s)	391, 635
Eco88I	CYCGRG	1 cut(s)	707
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	768
ErhI	CCWWGG	1 cut(s)	768
FaeI	CATG	2 cut(s)	400, 699
FaiI	YATR	6 cut(s)	24, 56, 398, 546, 697, 841
FaqI	GGGAC	2 cut(s)	59, 481
FatI	CATG	2 cut(s)	396, 695
FauI	CCCGC	1 cut(s)	368
Fnu4HI	GCNGC	5 cut(s)	6, 42, 45, 357, 373
FokI	GGATG	1 cut(s)	712
Fsp4HI	GCNGC	5 cut(s)	6, 42, 45, 357, 373
GlaI	GCGC	3 cut(s)	220, 235, 297
GluI	GCNGC	5 cut(s)	6, 42, 45, 357, 373
GsaI	CCCAGC	1 cut(s)	466
HaeII	RGCGCY	1 cut(s)	299
HaeIII	GGCC	3 cut(s)	215, 722, 804
HapII	CCGG	4 cut(s)	71, 92, 216, 299
HhaI	GCGC	3 cut(s)	221, 236, 298
Hin1II	CATG	2 cut(s)	400, 699
Hin6I	GCGC	3 cut(s)	219, 234, 296
HinP1I	GCGC	3 cut(s)	219, 234, 296
HindIII	AAGCTT	2 cut(s)	276, 617
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	4 cut(s)	71, 92, 216, 299
HphI	GGTGA	2 cut(s)	566, 611
Hpy166II	GTNNAC	2 cut(s)	433, 693
Hpy188I	TCNGA	5 cut(s)	13, 250, 291, 410, 483
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	2 cut(s)	433, 693
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	2 cut(s)	379, 415
HpyCH4III	ACNGT	3 cut(s)	68, 472, 819
HpyCH4IV	ACGT	3 cut(s)	135, 435, 488
HpyCH4V	TGCA	6 cut(s)	47, 186, 396, 425, 660, 684
HpyF10VI	GCNNNNNNNGC	5 cut(s)	179, 216, 240, 422, 728
HpyF3I	CTNAG	2 cut(s)	447, 670
HpySE526I	ACGT	3 cut(s)	135, 435, 488
Hsp92II	CATG	2 cut(s)	400, 699
HspAI	GCGC	3 cut(s)	219, 234, 296
KroI	GCCGGC	1 cut(s)	215
KroNI	GCCGGC	1 cut(s)	217
KspI	CCGCGG	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	225, 245, 478
LmnI	GCTCC	2 cut(s)	202, 316
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	836
MaeII	ACGT	3 cut(s)	135, 435, 488
MaeIII	GTNAC	1 cut(s)	626
MalI	GATC	3 cut(s)	227, 247, 480
MboI	GATC	3 cut(s)	225, 245, 478
MflI	RGATCY	1 cut(s)	245
MluCI	AATT	8 cut(s)	59, 496, 515, 541, 604, 636, 645, 735
MluI	ACGCGT	1 cut(s)	171
MnlI	CCTC	7 cut(s)	205, 306, 319, 334, 411, 571, 754
MroNI	GCCGGC	1 cut(s)	215
MroXI	GAANNNNTTC	1 cut(s)	404
MseI	TTAA	3 cut(s)	644, 738, 813
MspA1I	CMGCKG	3 cut(s)	44, 87, 243
MspI	CCGG	4 cut(s)	71, 92, 216, 299
MspR9I	CCNGG	1 cut(s)	140
Mva1269I	GAATGC	3 cut(s)	34, 662, 684
MvaI	CCWGG	1 cut(s)	140
MvnI	CGCG	2 cut(s)	87, 173
MwoI	GCNNNNNNNGC	5 cut(s)	179, 216, 240, 422, 728
NaeI	GCCGGC	1 cut(s)	217
NdeII	GATC	3 cut(s)	225, 245, 478
NgoMIV	GCCGGC	1 cut(s)	215
NlaIII	CATG	2 cut(s)	400, 699
NlaIV	GGNNCC	2 cut(s)	75, 247
PcsI	WCGNNNNNNNCGW	1 cut(s)	103
PctI	GAATGC	3 cut(s)	34, 662, 684
PdiI	GCCGGC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	14
Pfl23II	CGTACG	1 cut(s)	132
PinAI	ACCGGT	1 cut(s)	91
PkrI	GCNGC	5 cut(s)	7, 43, 46, 358, 374
Ppu21I	YACGTR	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	138
PspFI	CCCAGC	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	138
PspLI	CGTACG	1 cut(s)	132
PspN4I	GGNNCC	2 cut(s)	75, 247
PspPI	GGNCC	5 cut(s)	73, 89, 128, 720, 803
PstNI	CAGNNNCTG	2 cut(s)	44, 183
PsuI	RGATCY	1 cut(s)	245
RsaI	GTAC	6 cut(s)	134, 176, 487, 680, 756, 835
RsaNI	GTAC	6 cut(s)	133, 175, 486, 679, 755, 834
Rsr2I	CGGWCCG	2 cut(s)	89, 128
RsrII	CGGWCCG	2 cut(s)	89, 128
SacII	CCGCGG	1 cut(s)	88
SaqAI	TTAA	3 cut(s)	644, 738, 813
SatI	GCNGC	5 cut(s)	6, 42, 45, 357, 373
Sau3AI	GATC	3 cut(s)	225, 245, 478
Sau96I	GGNCC	5 cut(s)	73, 89, 128, 720, 803
ScaI	AGTACT	1 cut(s)	756
ScrFI	CCNGG	1 cut(s)	140
SetI	ASST	9 cut(s)	138, 280, 438, 491, 582, 621, 654, 770, 839
SfaNI	GCATC	1 cut(s)	836
Sfr303I	CCGCGG	1 cut(s)	88
SgrBI	CCGCGG	1 cut(s)	88
SinI	GGWCC	3 cut(s)	73, 89, 128
Sse9I	AATT	8 cut(s)	59, 496, 515, 541, 604, 636, 645, 735
SspI	AATATT	1 cut(s)	811
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	768
TaaI	ACNGT	3 cut(s)	68, 472, 819
TaiI	ACGT	3 cut(s)	138, 438, 491
TaqI	TCGA	4 cut(s)	17, 27, 63, 148
TasI	AATT	8 cut(s)	59, 496, 515, 541, 604, 636, 645, 735
TatI	WGTACW	1 cut(s)	754
TauI	GCSGC	4 cut(s)	8, 44, 359, 375
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	3 cut(s)	644, 738, 813
Tru9I	TTAA	3 cut(s)	644, 738, 813
TscAI	CASTG	3 cut(s)	212, 326, 618
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	1 cut(s)	413
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	3 cut(s)	212, 326, 618
VpaK11BI	GGWCC	3 cut(s)	73, 89, 128
XapI	RAATTY	1 cut(s)	604
XmnI	GAANNNNTTC	1 cut(s)	404
ZrmI	AGTACT	1 cut(s)	756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.