Rw5G021300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003925
Physical Location & Seq
Reverse (-)
28566280 .. 28566645
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G021300.1

Sequence Viewer

Length: 366 bp
ATGGATGCCACTGCCCCCCCAGCCTCAATCCCTGACCAGAACCCCTCGTCCGGCCCATACGTGCTGACATTCCCCGACCCGAAAACCTGGGCCAAAGCCTACAGAGAGTACGAGTCCAATATCCTACACCAATGCGAGGTCGGATCGAGAATCGGGTGCGCCATCATCACATCGAGCAAGTGTAAGCCGCTGTGGTGGCGGTTTTTGATTGGGCAAAAAGCACCGGACTTGAAGCAGAGGACGGAGTGCGAGGAGAGAGAGACAGAGGGGTGTTTGGCTCCTAATTGTAGGGCGGGTGGGCTGGTTGGTTGTTCCGGTGAGGTTGATCGGGTTTTAGGTGGTGGCAGTGAGACTTTTAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.19

Weight (kDa)

5.83

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 188, 199, 293
AclWI GGATC 1 cut(s) 151
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 2 cut(s) 50, 136
AgsI TTSAA 1 cut(s) 232
AjnI CCWGG 1 cut(s) 86
AloI GAACNNNNNNTCC 2 cut(s) 32, 64
Alw26I GTCTC 2 cut(s) 254, 344
AlwI GGATC 1 cut(s) 151
AoxI GGCC 2 cut(s) 52, 90
AspLEI GCGC 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 53, 90
AsuHPI GGTGA 1 cut(s) 329
BccI CCATC 1 cut(s) 170
BciT130I CCWGG 1 cut(s) 88
BcoDI GTCTC 2 cut(s) 254, 344
BfmI CTRYAG 1 cut(s) 100
BisI GCNGC 1 cut(s) 188
BlsI GCNGC 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 88
BmgT120I GGNCC 2 cut(s) 53, 90
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 88
BsaAI YACGTR 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 87
BsaWI WCCGGW 2 cut(s) 223, 314
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 136
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 50, 136
BseRI GAGGAG 1 cut(s) 266
BseYI CCCAGC 1 cut(s) 19
BshFI GGCC 2 cut(s) 54, 92
BsiSI CCGG 3 cut(s) 51, 224, 315
BslI CCNNNNNNNGG 2 cut(s) 50, 136
BsmAI GTCTC 2 cut(s) 254, 344
BsnI GGCC 2 cut(s) 54, 92
Bsp143I GATC 2 cut(s) 143, 325
BspACI CCGC 3 cut(s) 188, 199, 293
BspANI GGCC 2 cut(s) 54, 92
BspLI GGNNCC 1 cut(s) 279
BspPI GGATC 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 2 cut(s) 143, 325
Bst2UI CCWGG 1 cut(s) 88
BstBAI YACGTR 1 cut(s) 61
BstF5I GGATG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 2 cut(s) 146, 328
BstMAI GTCTC 2 cut(s) 254, 344
BstMBI GATC 2 cut(s) 143, 325
BstMWI GCNNNNNNNGC 2 cut(s) 20, 196
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 100
BsuRI GGCC 2 cut(s) 54, 92
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 2 cut(s) 9, 352
BtsIMutI CAGTG 2 cut(s) 9, 352
CfoI GCGC 1 cut(s) 161
Cfr13I GGNCC 2 cut(s) 53, 90
Csp6I GTAC 1 cut(s) 109
CviJI RGCY 7 cut(s) 23, 54, 92, 98, 187, 278, 301
CviKI_1 RGCY 7 cut(s) 23, 54, 92, 98, 187, 278, 301
CviQI GTAC 1 cut(s) 109
DpnI GATC 2 cut(s) 145, 327
DpnII GATC 2 cut(s) 143, 325
EcoRII CCWGG 1 cut(s) 86
FaiI YATR 1 cut(s) 58
FauI CCCGC 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 188
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 188
GlaI GCGC 1 cut(s) 160
GluI GCNGC 1 cut(s) 188
GsaI CCCAGC 1 cut(s) 23
HaeIII GGCC 2 cut(s) 54, 92
HapII CCGG 3 cut(s) 51, 224, 315
HhaI GCGC 1 cut(s) 161
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HinfI GANTC 2 cut(s) 113, 150
HpaII CCGG 3 cut(s) 51, 224, 315
HphI GGTGA 1 cut(s) 329
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 1 cut(s) 147
HpyCH4IV ACGT 1 cut(s) 60
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 196
HpySE526I ACGT 1 cut(s) 60
HspAI GCGC 1 cut(s) 159
Kzo9I GATC 2 cut(s) 143, 325
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 9 cut(s) 33, 45, 50, 64, 73, 100, 237, 287, 328
MaeII ACGT 1 cut(s) 60
MalI GATC 2 cut(s) 145, 327
MboI GATC 2 cut(s) 143, 325
MluCI AATT 1 cut(s) 283
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 7 cut(s) 34, 55, 130, 231, 244, 259, 313
MseI TTAA 1 cut(s) 357
MspA1I CMGCKG 1 cut(s) 190
MspI CCGG 3 cut(s) 51, 224, 315
MspR9I CCNGG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 88
MwoI GCNNNNNNNGC 2 cut(s) 20, 196
NdeII GATC 2 cut(s) 143, 325
NlaIV GGNNCC 1 cut(s) 279
PfeI GAWTC 1 cut(s) 150
PkrI GCNGC 1 cut(s) 189
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Ppu21I YACGTR 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 86
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 2 cut(s) 53, 90
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 1 cut(s) 188
Sau3AI GATC 2 cut(s) 143, 325
Sau96I GGNCC 2 cut(s) 53, 90
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 88
SetI ASST 5 cut(s) 63, 89, 141, 324, 340
SfcI CTRYAG 1 cut(s) 100
Sse9I AATT 1 cut(s) 283
SsiI CCGC 3 cut(s) 188, 199, 293
StyD4I CCNGG 1 cut(s) 86
TaiI ACGT 1 cut(s) 63
TaqI TCGA 2 cut(s) 146, 173
TasI AATT 1 cut(s) 283
TauI GCSGC 1 cut(s) 190
TfiI GAWTC 1 cut(s) 150
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 2 cut(s) 16, 352
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 2 cut(s) 16, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.