Rroxscaffold_7G00177530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003925
Physical Location & Seq
Reverse (-)
17089509 .. 17090132
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00177530.1

Sequence Viewer

Length: 624 bp
ATGGCGACCCCGGAACCCAGCAACATCGACGAGGAGCTCTCCGCCGCCTCCACGACCATCTTATTCGACCGCCCCGTCCCCTTGCTCCGCGGGCCGGTCCGGGCCGGTCCGCCCGACGACCCGTCGTCCGGCCCGTACGTGCTGGCATTCCGCGACGCGAAAACCTGGGCCAACGCCTACAGAGCGTGCGAGTCGAAGATCCTACACCAGTGCGAGACCGGGTCGAGAATCGGGTGCGCCCTCAGAGCATCGAGCAAGTGCAAGCCGCCGTGGTGGCGGATTCTGATTGGGCAGAAAGCGCCGGAGTTGAAGCAGAGGGCGGAGTGCGAGGAGAGAGAGACGGAGGGGTGTTTGGCTACGGCGAAGGAGAAGTGCGTTGGGTTTGCGAGAGACAAGTGCGTGGAGCCGTTTAGGGAGGCTAGGGTGTTTGGGGTGAGTAAGAAGCAGGCGGAGAAGATGGTGTGCTGGGCGAGTGTGATCGATAAAAGTAGTACATGGGTGAGTTTGATTGGCTTGGAGAACTGTGGGTTTGGGGCGACGAATTGTAGGGCGGTTGAGCTGGTCGGGTATTCCGGTGAGGTTGATCGGGTTTTAGGTGGTGGCAGTGAGACTTTGAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

22.57

Weight (kDa)

7.98

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccII CGCG 3 cut(s) 90, 153, 158
AclWI GGATC 1 cut(s) 193
AfaI GTAC 2 cut(s) 137, 493
AfiI CCNNNNNNNGG 2 cut(s) 94, 128
AgsI TTSAA 2 cut(s) 310, 616
AhdI GACNNNNNGTC 2 cut(s) 121, 124
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 2 cut(s) 37, 559
AluI AGCT 2 cut(s) 37, 559
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 4 cut(s) 209, 332, 384, 602
AlwI GGATC 1 cut(s) 193
AoxI GGCC 4 cut(s) 92, 102, 130, 168
AspLEI GCGC 2 cut(s) 239, 301
AspS9I GGNCC 6 cut(s) 92, 97, 102, 107, 131, 168
AsuC2I CCSGG 3 cut(s) 11, 101, 220
AsuHPI GGTGA 3 cut(s) 445, 511, 587
AvaII GGWCC 2 cut(s) 97, 107
BanII GRGCYC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 39
BccI CCATC 2 cut(s) 65, 451
BceAI ACGGC 3 cut(s) 253, 375, 391
BciT130I CCWGG 1 cut(s) 166
BcnI CCSGG 3 cut(s) 11, 101, 220
BcoDI GTCTC 4 cut(s) 209, 332, 384, 602
BfaI CTAG 1 cut(s) 420
BfmI CTRYAG 1 cut(s) 178
BfoI RGCGCY 1 cut(s) 302
BglI GCCNNNNNGGC 1 cut(s) 274
BisI GCNGC 2 cut(s) 45, 266
BlsI GCNGC 2 cut(s) 46, 267
Bme1390I CCNGG 4 cut(s) 11, 101, 166, 220
Bme18I GGWCC 2 cut(s) 97, 107
BmeRI GACNNNNNGTC 2 cut(s) 121, 124
BmgT120I GGNCC 6 cut(s) 92, 97, 102, 107, 131, 168
BmiI GGNNCC 2 cut(s) 15, 405
BmrFI CCNGG 4 cut(s) 11, 101, 166, 220
BmsI GCATC 1 cut(s) 257
BplI GAGNNNNNCTC 2 cut(s) 23, 55
BpuMI CCSGG 3 cut(s) 11, 101, 220
Bsa29I ATCGAT 1 cut(s) 480
BsaAI YACGTR 1 cut(s) 139
BsaI GGTCTC 1 cut(s) 209
BsaJI CCNNGG 4 cut(s) 9, 88, 165, 269
BsaWI WCCGGW 1 cut(s) 572
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 128
Bse118I RCCGGY 2 cut(s) 94, 104
Bse1I ACTGG 1 cut(s) 208
BseBI CCWGG 1 cut(s) 166
BseCI ATCGAT 1 cut(s) 480
BseDI CCNNGG 4 cut(s) 9, 88, 165, 269
BseLI CCNNNNNNNGG 2 cut(s) 94, 128
BseMII CTCAG 1 cut(s) 256
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 2 cut(s) 47, 344
BseYI CCCAGC 2 cut(s) 17, 465
Bsh1236I CGCG 3 cut(s) 90, 153, 158
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 4 cut(s) 94, 104, 132, 170
BshVI ATCGAT 1 cut(s) 480
BsiEI CGRYCG 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 8 cut(s) 11, 95, 100, 105, 129, 219, 302, 573
BsiWI CGTACG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 2 cut(s) 94, 128
BsmAI GTCTC 4 cut(s) 209, 332, 384, 602
BsmBI CGTCTC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 62
BsmI GAATGC 1 cut(s) 146
BsnI GGCC 4 cut(s) 94, 104, 132, 170
Bso31I GGTCTC 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 3 cut(s) 198, 477, 583
BspANI GGCC 4 cut(s) 94, 104, 132, 170
BspCNI CTCAG 1 cut(s) 255
BspDI ATCGAT 1 cut(s) 480
BspFNI CGCG 3 cut(s) 90, 153, 158
BspLI GGNNCC 2 cut(s) 15, 405
BspPI GGATC 1 cut(s) 193
BspTNI GGTCTC 1 cut(s) 209
BsrFI RCCGGY 2 cut(s) 94, 104
BsrI ACTGG 1 cut(s) 208
BssAI RCCGGY 2 cut(s) 94, 104
BssECI CCNNGG 4 cut(s) 9, 88, 165, 269
BssMI GATC 3 cut(s) 198, 477, 583
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 524
BstBAI YACGTR 1 cut(s) 139
BstC8I GCNNGC 5 cut(s) 92, 144, 187, 263, 447
BstDEI CTNAG 1 cut(s) 242
BstDSI CCRYGG 2 cut(s) 88, 269
BstFNI CGCG 3 cut(s) 90, 153, 158
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 2 cut(s) 239, 301
BstKTI GATC 3 cut(s) 201, 480, 586
BstMAI GTCTC 4 cut(s) 209, 332, 384, 602
BstMBI GATC 3 cut(s) 198, 477, 583
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 5 cut(s) 91, 182, 245, 274, 298
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 4 cut(s) 9, 99, 164, 218
BstSFI CTRYAG 1 cut(s) 178
BstUI CGCG 3 cut(s) 90, 153, 158
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
Bsu15I ATCGAT 1 cut(s) 480
BsuRI GGCC 4 cut(s) 94, 104, 132, 170
BsuTUI ATCGAT 1 cut(s) 480
BtgI CCRYGG 2 cut(s) 88, 269
BtsI GCAGTG 1 cut(s) 610
BtsIMutI CAGTG 2 cut(s) 215, 610
Cac8I GCNNGC 5 cut(s) 92, 144, 187, 263, 447
CfoI GCGC 2 cut(s) 239, 301
Cfr10I RCCGGY 2 cut(s) 94, 104
Cfr13I GGNCC 6 cut(s) 92, 97, 102, 107, 131, 168
Cfr42I CCGCGG 1 cut(s) 91
ClaI ATCGAT 1 cut(s) 480
CpoI CGGWCCG 2 cut(s) 97, 107
CseI GACGC 1 cut(s) 164
Csp6I GTAC 2 cut(s) 136, 492
CspI CGGWCCG 2 cut(s) 97, 107
CviAII CATG 1 cut(s) 495
CviQI GTAC 2 cut(s) 136, 492
DdeI CTNAG 1 cut(s) 242
DpnI GATC 3 cut(s) 200, 479, 585
DpnII GATC 3 cut(s) 198, 477, 583
DrdI GACNNNNNNGTC 1 cut(s) 74
DriI GACNNNNNGTC 2 cut(s) 121, 124
DseDI GACNNNNNNGTC 1 cut(s) 74
Eam1105I GACNNNNNGTC 2 cut(s) 121, 124
EciI GGCGGA 5 cut(s) 31, 99, 292, 335, 464
Ecl136II GAGCTC 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 209
Eco47I GGWCC 2 cut(s) 97, 107
Eco53kI GAGCTC 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 39
Esp3I CGTCTC 1 cut(s) 332
FaeI CATG 1 cut(s) 498
FaiI YATR 1 cut(s) 496
FaqI GGGAC 1 cut(s) 62
FatI CATG 1 cut(s) 494
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 2 cut(s) 45, 266
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 2 cut(s) 45, 266
FspBI CTAG 1 cut(s) 420
GlaI GCGC 2 cut(s) 238, 300
GluI GCNGC 2 cut(s) 45, 266
GsaI CCCAGC 2 cut(s) 21, 469
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 4 cut(s) 94, 104, 132, 170
HapII CCGG 8 cut(s) 11, 95, 100, 105, 129, 219, 302, 573
HgaI GACGC 1 cut(s) 164
HhaI GCGC 2 cut(s) 239, 301
Hin1II CATG 1 cut(s) 498
Hin6I GCGC 2 cut(s) 237, 299
HinP1I GCGC 2 cut(s) 237, 299
HinfI GANTC 3 cut(s) 191, 228, 280
HpaII CCGG 8 cut(s) 11, 95, 100, 105, 129, 219, 302, 573
HphI GGTGA 3 cut(s) 445, 511, 587
Hpy188I TCNGA 2 cut(s) 245, 285
Hpy188III TCNNGA 1 cut(s) 225
Hpy99I CGWCG 5 cut(s) 32, 119, 127, 158, 541
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 1 cut(s) 524
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 261
HpyF10VI GCNNNNNNNGC 5 cut(s) 91, 182, 245, 274, 298
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 1 cut(s) 498
HspAI GCGC 2 cut(s) 237, 299
KspI CCGCGG 1 cut(s) 91
Kzo9I GATC 3 cut(s) 198, 477, 583
LmnI GCTCC 3 cut(s) 34, 90, 403
LweI GCATC 1 cut(s) 257
MaeI CTAG 1 cut(s) 420
MaeII ACGT 1 cut(s) 138
MalI GATC 3 cut(s) 200, 479, 585
MboI GATC 3 cut(s) 198, 477, 583
MboII GAAGA 2 cut(s) 208, 466
MflI RGATCY 1 cut(s) 198
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 1 cut(s) 541
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 8 cut(s) 25, 58, 251, 309, 322, 337, 409, 571
MspA1I CMGCKG 1 cut(s) 90
MspI CCGG 8 cut(s) 11, 95, 100, 105, 129, 219, 302, 573
MspR9I CCNGG 4 cut(s) 11, 101, 166, 220
Mva1269I GAATGC 1 cut(s) 146
MvaI CCWGG 1 cut(s) 166
MvnI CGCG 3 cut(s) 90, 153, 158
MwoI GCNNNNNNNGC 5 cut(s) 91, 182, 245, 274, 298
NciI CCSGG 3 cut(s) 11, 101, 220
NdeII GATC 3 cut(s) 198, 477, 583
NlaIII CATG 1 cut(s) 498
NlaIV GGNNCC 2 cut(s) 15, 405
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 131
PctI GAATGC 1 cut(s) 146
PfeI GAWTC 2 cut(s) 228, 280
Pfl23II CGTACG 1 cut(s) 135
PflFI GACNNNGTC 1 cut(s) 220
PkrI GCNGC 2 cut(s) 46, 267
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
Ppu21I YACGTR 1 cut(s) 139
Psp124BI GAGCTC 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 164
PspFI CCCAGC 2 cut(s) 17, 465
PspGI CCWGG 1 cut(s) 164
PspLI CGTACG 1 cut(s) 135
PspN4I GGNNCC 2 cut(s) 15, 405
PspPI GGNCC 6 cut(s) 92, 97, 102, 107, 131, 168
PsuI RGATCY 1 cut(s) 198
PsyI GACNNNGTC 1 cut(s) 220
RsaI GTAC 2 cut(s) 137, 493
RsaNI GTAC 2 cut(s) 136, 492
Rsr2I CGGWCCG 2 cut(s) 97, 107
RsrII CGGWCCG 2 cut(s) 97, 107
SacI GAGCTC 1 cut(s) 39
SacII CCGCGG 1 cut(s) 91
SatI GCNGC 2 cut(s) 45, 266
Sau3AI GATC 3 cut(s) 198, 477, 583
Sau96I GGNCC 6 cut(s) 92, 97, 102, 107, 131, 168
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 4 cut(s) 11, 101, 166, 220
SduI GDGCHC 1 cut(s) 39
SetI ASST 6 cut(s) 39, 141, 167, 561, 582, 598
SfaNI GCATC 1 cut(s) 257
SfcI CTRYAG 1 cut(s) 178
Sfr303I CCGCGG 1 cut(s) 91
SgrBI CCGCGG 1 cut(s) 91
SinI GGWCC 2 cut(s) 97, 107
Sse9I AATT 1 cut(s) 541
SspMI CTAG 1 cut(s) 420
SstI GAGCTC 1 cut(s) 39
StyD4I CCNGG 4 cut(s) 9, 99, 164, 218
TaaI ACNGT 1 cut(s) 524
TaiI ACGT 1 cut(s) 141
TaqI TCGA 6 cut(s) 27, 66, 194, 224, 251, 480
TasI AATT 1 cut(s) 541
TatI WGTACW 1 cut(s) 491
TauI GCSGC 2 cut(s) 47, 268
TfiI GAWTC 2 cut(s) 228, 280
TscAI CASTG 2 cut(s) 215, 610
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 2 cut(s) 215, 610
Tth111I GACNNNGTC 1 cut(s) 220
VpaK11BI GGWCC 2 cut(s) 97, 107
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.