Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8501753.1

Orthogroup ID

OG0003925

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 537

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8501753.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ttgctccgcgggccggtccgggccggcctgcccgacgacccgtcgtccggcccgtacgtgctggcattccgcgacgcgaaaacctgggccaacgcctacagagcgtgcgagtcgaagatcctacaccagtgcgagaccttgtcgagaatcgagtgcgccctcagcgcatcgagcaagtgcaagccgccgtggtgggggtttctgatcgggcagaaagcgccggagttgaagcagagggcggagtgcgaggagagagagacggaggggtgtttggctacggcgaaggagaagtacgttgggcttgcgagagacaagtgcttggagccgtttagggaggcgagggtgtttggggtgagtaagaaacaggcggagaagatggtgtgctgggcgagtgtgatcgataaaagtagtacgtgggtgagtttgattgggttggagaattgtgggtttggggcgacgaattgtagggcggttgagctggttgggtattccggtgaggttgatcgggttttaggtggtggcggtgaggaactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

19.49

Weight (kDa)

7.62

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63390
fragaria_vesca	FvH4_2g22890 FvH4_2g22890 FvH4_2g22890
malus_domestica	MD03G1257200.v1.1 MD11G1277900.v1.1
prunus_persica	Prupe.1G517900_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1
pyrus_communis	pycom03g20390 pycom11g24570
rosa_chinensis	RchiOBHm_Chr6g0289821
rosa_laevigata	RLG00000012265
rosa_multiflora	Rmu_co8501753.1_g000001 Rmu_sc0000062.1_g000022 Rmu_sc0000616.1_g000017 Rmu_sc0002638.1_g000015 Rmu_sc0011921.1_g000014
rosa_roxburghii	Rroxscaffold_7G00177530
rosa_rugosa	Rorug06G0207200
rosa_samantha	Rh1CG355400 Rh3BG119600 Rh4CG249200 Rh6AG318700 Rh6BG325900 Rh6DG317200
rosa_wichuraiana	Rw2G018340 Rw4G013870 Rw5G021300 Rw6G027490 Rw7G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	9, 72, 77
AciI	CCGC	8 cut(s)	7, 9, 70, 185, 239, 368, 470, 522
AclWI	GGATC	1 cut(s)	112
AfaI	GTAC	3 cut(s)	56, 293, 412
AfiI	CCNNNNNNNGG	3 cut(s)	13, 47, 194
AgsI	TTSAA	1 cut(s)	229
AhdI	GACNNNNNGTC	2 cut(s)	40, 43
AjnI	CCWGG	1 cut(s)	83
AluBI	AGCT	1 cut(s)	478
AluI	AGCT	1 cut(s)	478
Alw26I	GTCTC	3 cut(s)	128, 251, 303
AlwI	GGATC	1 cut(s)	112
AoxI	GGCC	5 cut(s)	11, 21, 25, 49, 87
AspLEI	GCGC	3 cut(s)	158, 167, 220
AspS9I	GGNCC	5 cut(s)	11, 16, 21, 50, 87
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	4 cut(s)	364, 430, 506, 536
AvaII	GGWCC	1 cut(s)	16
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BbvCI	CCTCAGC	1 cut(s)	161
BccI	CCATC	1 cut(s)	370
BceAI	ACGGC	3 cut(s)	172, 294, 310
BciT130I	CCWGG	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	20
BcoDI	GTCTC	3 cut(s)	128, 251, 303
BfmI	CTRYAG	1 cut(s)	97
BfoI	RGCGCY	1 cut(s)	221
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	2 cut(s)	20, 85
Bme18I	GGWCC	1 cut(s)	16
BmeRI	GACNNNNNGTC	2 cut(s)	40, 43
BmgT120I	GGNCC	5 cut(s)	11, 16, 21, 50, 87
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	2 cut(s)	20, 85
BmsI	GCATC	1 cut(s)	176
Bpu10I	CCTNAGC	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	20
Bsa29I	ATCGAT	1 cut(s)	399
BsaAI	YACGTR	2 cut(s)	58, 414
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	7, 84, 188
BsaWI	WCCGGW	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 47, 194
Bse118I	RCCGGY	2 cut(s)	13, 23
Bse1I	ACTGG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	85
BseCI	ATCGAT	1 cut(s)	399
BseDI	CCNNGG	3 cut(s)	7, 84, 188
BseLI	CCNNNNNNNGG	3 cut(s)	13, 47, 194
BseMII	CTCAG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	127
BseRI	GAGGAG	1 cut(s)	263
BseYI	CCCAGC	1 cut(s)	384
Bsh1236I	CGCG	3 cut(s)	9, 72, 77
BshFI	GGCC	5 cut(s)	13, 23, 27, 51, 89
BshVI	ATCGAT	1 cut(s)	399
BsiSI	CCGG	6 cut(s)	14, 19, 24, 48, 221, 492
BsiWI	CGTACG	1 cut(s)	54
BslI	CCNNNNNNNGG	3 cut(s)	13, 47, 194
BsmAI	GTCTC	3 cut(s)	128, 251, 303
BsmBI	CGTCTC	1 cut(s)	251
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	5 cut(s)	13, 23, 27, 51, 89
Bso31I	GGTCTC	1 cut(s)	128
Bsp143I	GATC	4 cut(s)	117, 204, 396, 502
BspACI	CCGC	8 cut(s)	7, 9, 70, 185, 239, 368, 470, 522
BspANI	GGCC	5 cut(s)	13, 23, 27, 51, 89
BspCNI	CTCAG	1 cut(s)	174
BspDI	ATCGAT	1 cut(s)	399
BspFNI	CGCG	3 cut(s)	9, 72, 77
BspLI	GGNNCC	1 cut(s)	324
BspPI	GGATC	1 cut(s)	112
BspTNI	GGTCTC	1 cut(s)	128
BsrFI	RCCGGY	2 cut(s)	13, 23
BsrI	ACTGG	1 cut(s)	127
BssAI	RCCGGY	2 cut(s)	13, 23
BssECI	CCNNGG	3 cut(s)	7, 84, 188
BssMI	GATC	4 cut(s)	117, 204, 396, 502
Bst2UI	CCWGG	1 cut(s)	85
BstBAI	YACGTR	2 cut(s)	58, 414
BstC8I	GCNNGC	7 cut(s)	11, 25, 29, 63, 106, 182, 303
BstDEI	CTNAG	1 cut(s)	161
BstDSI	CCRYGG	2 cut(s)	7, 188
BstFNI	CGCG	3 cut(s)	9, 72, 77
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	3 cut(s)	158, 167, 220
BstKTI	GATC	4 cut(s)	120, 207, 399, 505
BstMAI	GTCTC	3 cut(s)	128, 251, 303
BstMBI	GATC	4 cut(s)	117, 204, 396, 502
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 101, 162, 164, 171, 217
BstNI	CCWGG	1 cut(s)	85
BstSCI	CCNGG	2 cut(s)	18, 83
BstSFI	CTRYAG	1 cut(s)	97
BstUI	CGCG	3 cut(s)	9, 72, 77
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
Bsu15I	ATCGAT	1 cut(s)	399
BsuRI	GGCC	5 cut(s)	13, 23, 27, 51, 89
BsuTUI	ATCGAT	1 cut(s)	399
BtgI	CCRYGG	2 cut(s)	7, 188
BtsIMutI	CAGTG	1 cut(s)	134
Cac8I	GCNNGC	7 cut(s)	11, 25, 29, 63, 106, 182, 303
CfoI	GCGC	3 cut(s)	158, 167, 220
Cfr10I	RCCGGY	2 cut(s)	13, 23
Cfr13I	GGNCC	5 cut(s)	11, 16, 21, 50, 87
Cfr42I	CCGCGG	1 cut(s)	10
ClaI	ATCGAT	1 cut(s)	399
CpoI	CGGWCCG	1 cut(s)	16
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	3 cut(s)	55, 292, 411
CspI	CGGWCCG	1 cut(s)	16
CviQI	GTAC	3 cut(s)	55, 292, 411
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	4 cut(s)	119, 206, 398, 504
DpnII	GATC	4 cut(s)	117, 204, 396, 502
DriI	GACNNNNNGTC	2 cut(s)	40, 43
Eam1105I	GACNNNNNGTC	2 cut(s)	40, 43
EciI	GGCGGA	2 cut(s)	254, 383
Eco31I	GGTCTC	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	83
Esp3I	CGTCTC	1 cut(s)	251
FauI	CCCGC	1 cut(s)	2
Fnu4HI	GCNGC	1 cut(s)	185
FseI	GGCCGGCC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	185
GlaI	GCGC	3 cut(s)	157, 166, 219
GluI	GCNGC	1 cut(s)	185
GsaI	CCCAGC	1 cut(s)	388
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	5 cut(s)	13, 23, 27, 51, 89
HapII	CCGG	6 cut(s)	14, 19, 24, 48, 221, 492
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	3 cut(s)	158, 167, 220
Hin6I	GCGC	3 cut(s)	156, 165, 218
HinP1I	GCGC	3 cut(s)	156, 165, 218
HinfI	GANTC	2 cut(s)	110, 147
HpaII	CCGG	6 cut(s)	14, 19, 24, 48, 221, 492
HphI	GGTGA	4 cut(s)	364, 430, 506, 536
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	1 cut(s)	144
Hpy99I	CGWCG	4 cut(s)	38, 46, 77, 460
HpyAV	CCTTC	1 cut(s)	277
HpyCH4IV	ACGT	3 cut(s)	57, 294, 413
HpyCH4V	TGCA	1 cut(s)	180
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 101, 162, 164, 171, 217
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	3 cut(s)	57, 294, 413
HspAI	GCGC	3 cut(s)	156, 165, 218
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
KspI	CCGCGG	1 cut(s)	10
Kzo9I	GATC	4 cut(s)	117, 204, 396, 502
LmnI	GCTCC	2 cut(s)	9, 322
LweI	GCATC	1 cut(s)	176
MaeII	ACGT	3 cut(s)	57, 294, 413
MalI	GATC	4 cut(s)	119, 206, 398, 504
MboI	GATC	4 cut(s)	117, 204, 396, 502
MboII	GAAGA	2 cut(s)	127, 385
MflI	RGATCY	1 cut(s)	117
MluCI	AATT	2 cut(s)	439, 460
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	8 cut(s)	170, 228, 241, 256, 328, 333, 490, 520
MroNI	GCCGGC	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	9
MspI	CCGG	6 cut(s)	14, 19, 24, 48, 221, 492
MspR9I	CCNGG	2 cut(s)	20, 85
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	85
MvnI	CGCG	3 cut(s)	9, 72, 77
MwoI	GCNNNNNNNGC	6 cut(s)	10, 101, 162, 164, 171, 217
NaeI	GCCGGC	1 cut(s)	25
NciI	CCSGG	1 cut(s)	20
NdeII	GATC	4 cut(s)	117, 204, 396, 502
NgoMIV	GCCGGC	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PctI	GAATGC	1 cut(s)	65
PdiI	GCCGGC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	147
Pfl23II	CGTACG	1 cut(s)	54
PflFI	GACNNNGTC	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	186
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Ppu21I	YACGTR	2 cut(s)	58, 414
Psp6I	CCWGG	1 cut(s)	83
PspFI	CCCAGC	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	83
PspLI	CGTACG	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	5 cut(s)	11, 16, 21, 50, 87
PsuI	RGATCY	1 cut(s)	117
PsyI	GACNNNGTC	1 cut(s)	139
RigI	GGCCGGCC	1 cut(s)	27
RsaI	GTAC	3 cut(s)	56, 293, 412
RsaNI	GTAC	3 cut(s)	55, 292, 411
Rsr2I	CGGWCCG	1 cut(s)	16
RsrII	CGGWCCG	1 cut(s)	16
SacII	CCGCGG	1 cut(s)	10
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	4 cut(s)	117, 204, 396, 502
Sau96I	GGNCC	5 cut(s)	11, 16, 21, 50, 87
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	20, 85
SetI	ASST	8 cut(s)	60, 86, 140, 297, 416, 480, 501, 517
SfaNI	GCATC	1 cut(s)	176
SfcI	CTRYAG	1 cut(s)	97
Sfr303I	CCGCGG	1 cut(s)	10
SgrBI	CCGCGG	1 cut(s)	10
SinI	GGWCC	1 cut(s)	16
Sse9I	AATT	2 cut(s)	439, 460
SsiI	CCGC	8 cut(s)	7, 9, 70, 185, 239, 368, 470, 522
StyD4I	CCNGG	2 cut(s)	18, 83
TaiI	ACGT	3 cut(s)	60, 297, 416
TaqI	TCGA	5 cut(s)	113, 143, 150, 170, 399
TasI	AATT	2 cut(s)	439, 460
TauI	GCSGC	1 cut(s)	187
TfiI	GAWTC	1 cut(s)	147
TscAI	CASTG	1 cut(s)	134
TspGWI	ACGGA	1 cut(s)	275
TspRI	CASTG	1 cut(s)	134
Tth111I	GACNNNGTC	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.