Rw6G027490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003925
Physical Location & Seq
Forward (+)
51318873 .. 51319785
913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G027490.1

Sequence Viewer

Length: 621 bp
ATGGCGACCCCGGAACCCAGCAACATCGACGAGGAGGAGCTCTCCGCCGCCTCCACGACCATCTTATTCGACCGCCCCGTCCCCTTGCTCCGCGGGCCGGTCCGGGCCGGCCTGCCCGACGACCCGTCGTCCGGCCCGTACGTGCTGGCATTCCGCGACGCGAAAACCTGGGCCAACGCCTACAGAGCGTGCGAGTCGAAGATCCTACACCAGTGCGAGACCTTGTCGAGAATCGAGTGCGCCCTCAGCGCATCGAGCAAGTGCAAGCCGCCGTGGTGGCGGTTTCTGATCGGGCAGAAAGCGCCGGAGTTGAAGCAGAGGGCGGAGTGCGAGGAGAGGGAGACGGAGGGGTGTTTGGCTACGGCGAAGGAGAAGTGCGTTGGGCTTGCGAGAGACAAGTGCTTGGAGCCGTTTAGGGAGGCGAGGGTGTTTGGGGTGAGTAAGAAACAGGCGGAGAAGATGGTGTGCTGGGCGAGTGTGATCGATAAAGGTAGTACGTGGGTGAGTTTGATTGGGTTGGAGAATTGTGGGTTTGGGGCGACGAATTGTAGGGCGGTTGAGCTGGTTGGGTATTCCGGTGAGGTTGATCGGGTTTTAGGTGGTGGCAGTGAGAAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

22.54

Weight (kDa)

6.02

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 77
AccII CGCG 3 cut(s) 93, 156, 161
AclWI GGATC 1 cut(s) 196
AfaI GTAC 2 cut(s) 140, 496
AfiI CCNNNNNNNGG 2 cut(s) 97, 131
AgsI TTSAA 1 cut(s) 313
AhdI GACNNNNNGTC 2 cut(s) 124, 127
AjnI CCWGG 1 cut(s) 167
AluBI AGCT 2 cut(s) 40, 562
AluI AGCT 2 cut(s) 40, 562
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 3 cut(s) 212, 335, 387
AlwI GGATC 1 cut(s) 196
AoxI GGCC 5 cut(s) 95, 105, 109, 133, 171
AspLEI GCGC 3 cut(s) 242, 251, 304
AspS9I GGNCC 5 cut(s) 95, 100, 105, 134, 171
AsuC2I CCSGG 2 cut(s) 11, 104
AsuHPI GGTGA 3 cut(s) 448, 514, 590
AvaII GGWCC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 42
BbvCI CCTCAGC 1 cut(s) 245
BccI CCATC 2 cut(s) 68, 454
BceAI ACGGC 3 cut(s) 256, 378, 394
BciT130I CCWGG 1 cut(s) 169
BcnI CCSGG 2 cut(s) 11, 104
BcoDI GTCTC 3 cut(s) 212, 335, 387
BfmI CTRYAG 1 cut(s) 181
BfoI RGCGCY 1 cut(s) 305
BglI GCCNNNNNGGC 1 cut(s) 277
BisI GCNGC 2 cut(s) 48, 269
BlsI GCNGC 2 cut(s) 49, 270
Bme1390I CCNGG 3 cut(s) 11, 104, 169
Bme18I GGWCC 1 cut(s) 100
BmeRI GACNNNNNGTC 2 cut(s) 124, 127
BmgT120I GGNCC 5 cut(s) 95, 100, 105, 134, 171
BmiI GGNNCC 2 cut(s) 15, 408
BmrFI CCNGG 3 cut(s) 11, 104, 169
BmsI GCATC 1 cut(s) 260
BplI GAGNNNNNCTC 2 cut(s) 26, 58
Bpu10I CCTNAGC 1 cut(s) 245
BpuMI CCSGG 2 cut(s) 11, 104
Bsa29I ATCGAT 1 cut(s) 483
BsaAI YACGTR 2 cut(s) 142, 498
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 4 cut(s) 9, 91, 168, 272
BsaWI WCCGGW 1 cut(s) 575
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 131
Bse118I RCCGGY 2 cut(s) 97, 107
Bse1I ACTGG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 169
BseCI ATCGAT 1 cut(s) 483
BseDI CCNNGG 4 cut(s) 9, 91, 168, 272
BseLI CCNNNNNNNGG 2 cut(s) 97, 131
BseMII CTCAG 1 cut(s) 259
BseNI ACTGG 1 cut(s) 211
BseRI GAGGAG 3 cut(s) 47, 50, 347
BseYI CCCAGC 2 cut(s) 17, 468
Bsh1236I CGCG 3 cut(s) 93, 156, 161
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 5 cut(s) 97, 107, 111, 135, 173
BshVI ATCGAT 1 cut(s) 483
BsiEI CGRYCG 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 7 cut(s) 11, 98, 103, 108, 132, 305, 576
BsiWI CGTACG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 2 cut(s) 97, 131
BsmAI GTCTC 3 cut(s) 212, 335, 387
BsmBI CGTCTC 1 cut(s) 335
BsmFI GGGAC 1 cut(s) 65
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 5 cut(s) 97, 107, 111, 135, 173
Bso31I GGTCTC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 4 cut(s) 201, 288, 480, 586
BspANI GGCC 5 cut(s) 97, 107, 111, 135, 173
BspCNI CTCAG 1 cut(s) 258
BspDI ATCGAT 1 cut(s) 483
BspFNI CGCG 3 cut(s) 93, 156, 161
BspLI GGNNCC 2 cut(s) 15, 408
BspPI GGATC 1 cut(s) 196
BspTNI GGTCTC 1 cut(s) 212
BsrFI RCCGGY 2 cut(s) 97, 107
BsrI ACTGG 1 cut(s) 211
BssAI RCCGGY 2 cut(s) 97, 107
BssECI CCNNGG 4 cut(s) 9, 91, 168, 272
BssMI GATC 4 cut(s) 201, 288, 480, 586
Bst2UI CCWGG 1 cut(s) 169
BstBAI YACGTR 2 cut(s) 142, 498
BstC8I GCNNGC 7 cut(s) 95, 109, 113, 147, 190, 266, 387
BstDEI CTNAG 1 cut(s) 245
BstDSI CCRYGG 2 cut(s) 91, 272
BstFNI CGCG 3 cut(s) 93, 156, 161
BstH2I RGCGCY 1 cut(s) 305
BstHHI GCGC 3 cut(s) 242, 251, 304
BstKTI GATC 4 cut(s) 204, 291, 483, 589
BstMAI GTCTC 3 cut(s) 212, 335, 387
BstMBI GATC 4 cut(s) 201, 288, 480, 586
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 7 cut(s) 94, 185, 246, 248, 255, 277, 301
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 3 cut(s) 9, 102, 167
BstSFI CTRYAG 1 cut(s) 181
BstUI CGCG 3 cut(s) 93, 156, 161
BstX2I RGATCY 1 cut(s) 201
BstYI RGATCY 1 cut(s) 201
Bsu15I ATCGAT 1 cut(s) 483
BsuRI GGCC 5 cut(s) 97, 107, 111, 135, 173
BsuTUI ATCGAT 1 cut(s) 483
BtgI CCRYGG 2 cut(s) 91, 272
BtsI GCAGTG 1 cut(s) 613
BtsIMutI CAGTG 2 cut(s) 218, 613
Cac8I GCNNGC 7 cut(s) 95, 109, 113, 147, 190, 266, 387
CfoI GCGC 3 cut(s) 242, 251, 304
Cfr10I RCCGGY 2 cut(s) 97, 107
Cfr13I GGNCC 5 cut(s) 95, 100, 105, 134, 171
Cfr42I CCGCGG 1 cut(s) 94
ClaI ATCGAT 1 cut(s) 483
CpoI CGGWCCG 1 cut(s) 100
CseI GACGC 1 cut(s) 167
Csp6I GTAC 2 cut(s) 139, 495
CspI CGGWCCG 1 cut(s) 100
CviQI GTAC 2 cut(s) 139, 495
DdeI CTNAG 1 cut(s) 245
DpnI GATC 4 cut(s) 203, 290, 482, 588
DpnII GATC 4 cut(s) 201, 288, 480, 586
DrdI GACNNNNNNGTC 1 cut(s) 77
DriI GACNNNNNGTC 2 cut(s) 124, 127
DseDI GACNNNNNNGTC 1 cut(s) 77
Eam1105I GACNNNNNGTC 2 cut(s) 124, 127
EciI GGCGGA 3 cut(s) 34, 338, 467
Ecl136II GAGCTC 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 40
EcoRII CCWGG 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 42
Esp3I CGTCTC 1 cut(s) 335
FaqI GGGAC 1 cut(s) 65
FauI CCCGC 1 cut(s) 86
Fnu4HI GCNGC 2 cut(s) 48, 269
FriOI GRGCYC 1 cut(s) 42
FseI GGCCGGCC 1 cut(s) 111
Fsp4HI GCNGC 2 cut(s) 48, 269
GlaI GCGC 3 cut(s) 241, 250, 303
GluI GCNGC 2 cut(s) 48, 269
GsaI CCCAGC 2 cut(s) 21, 472
HaeII RGCGCY 1 cut(s) 305
HaeIII GGCC 5 cut(s) 97, 107, 111, 135, 173
HapII CCGG 7 cut(s) 11, 98, 103, 108, 132, 305, 576
HgaI GACGC 1 cut(s) 167
HhaI GCGC 3 cut(s) 242, 251, 304
Hin6I GCGC 3 cut(s) 240, 249, 302
HinP1I GCGC 3 cut(s) 240, 249, 302
HinfI GANTC 2 cut(s) 194, 231
HpaII CCGG 7 cut(s) 11, 98, 103, 108, 132, 305, 576
HphI GGTGA 3 cut(s) 448, 514, 590
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 1 cut(s) 228
Hpy99I CGWCG 5 cut(s) 32, 122, 130, 161, 544
HpyAV CCTTC 1 cut(s) 361
HpyCH4IV ACGT 2 cut(s) 141, 497
HpyCH4V TGCA 1 cut(s) 264
HpyF10VI GCNNNNNNNGC 7 cut(s) 94, 185, 246, 248, 255, 277, 301
HpyF3I CTNAG 1 cut(s) 245
HpySE526I ACGT 2 cut(s) 141, 497
HspAI GCGC 3 cut(s) 240, 249, 302
KroI GCCGGC 1 cut(s) 107
KroNI GCCGGC 1 cut(s) 109
KspI CCGCGG 1 cut(s) 94
Kzo9I GATC 4 cut(s) 201, 288, 480, 586
LmnI GCTCC 3 cut(s) 37, 93, 406
LweI GCATC 1 cut(s) 260
MaeII ACGT 2 cut(s) 141, 497
MalI GATC 4 cut(s) 203, 290, 482, 588
MboI GATC 4 cut(s) 201, 288, 480, 586
MboII GAAGA 2 cut(s) 211, 469
MflI RGATCY 1 cut(s) 201
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 2 cut(s) 523, 544
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 498
MroNI GCCGGC 1 cut(s) 107
MspA1I CMGCKG 1 cut(s) 93
MspI CCGG 7 cut(s) 11, 98, 103, 108, 132, 305, 576
MspR9I CCNGG 3 cut(s) 11, 104, 169
Mva1269I GAATGC 1 cut(s) 149
MvaI CCWGG 1 cut(s) 169
MvnI CGCG 3 cut(s) 93, 156, 161
MwoI GCNNNNNNNGC 7 cut(s) 94, 185, 246, 248, 255, 277, 301
NaeI GCCGGC 1 cut(s) 109
NciI CCSGG 2 cut(s) 11, 104
NdeII GATC 4 cut(s) 201, 288, 480, 586
NgoMIV GCCGGC 1 cut(s) 107
NlaIV GGNNCC 2 cut(s) 15, 408
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 134
PctI GAATGC 1 cut(s) 149
PdiI GCCGGC 1 cut(s) 109
PfeI GAWTC 1 cut(s) 231
Pfl23II CGTACG 1 cut(s) 138
PflFI GACNNNGTC 1 cut(s) 223
PkrI GCNGC 2 cut(s) 49, 270
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Ppu21I YACGTR 2 cut(s) 142, 498
Psp124BI GAGCTC 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 167
PspFI CCCAGC 2 cut(s) 17, 468
PspGI CCWGG 1 cut(s) 167
PspLI CGTACG 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 15, 408
PspPI GGNCC 5 cut(s) 95, 100, 105, 134, 171
PsuI RGATCY 1 cut(s) 201
PsyI GACNNNGTC 1 cut(s) 223
RigI GGCCGGCC 1 cut(s) 111
RsaI GTAC 2 cut(s) 140, 496
RsaNI GTAC 2 cut(s) 139, 495
Rsr2I CGGWCCG 1 cut(s) 100
RsrII CGGWCCG 1 cut(s) 100
SacI GAGCTC 1 cut(s) 42
SacII CCGCGG 1 cut(s) 94
SatI GCNGC 2 cut(s) 48, 269
Sau3AI GATC 4 cut(s) 201, 288, 480, 586
Sau96I GGNCC 5 cut(s) 95, 100, 105, 134, 171
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 3 cut(s) 11, 104, 169
SduI GDGCHC 1 cut(s) 42
SetI ASST 9 cut(s) 42, 144, 170, 224, 493, 500, 564, 585, 601
SfaNI GCATC 1 cut(s) 260
SfcI CTRYAG 1 cut(s) 181
Sfr303I CCGCGG 1 cut(s) 94
SgrBI CCGCGG 1 cut(s) 94
SinI GGWCC 1 cut(s) 100
Sse9I AATT 2 cut(s) 523, 544
SstI GAGCTC 1 cut(s) 42
StyD4I CCNGG 3 cut(s) 9, 102, 167
TaiI ACGT 2 cut(s) 144, 500
TaqI TCGA 7 cut(s) 27, 69, 197, 227, 234, 254, 483
TasI AATT 2 cut(s) 523, 544
TauI GCSGC 2 cut(s) 50, 271
TfiI GAWTC 1 cut(s) 231
TscAI CASTG 2 cut(s) 218, 613
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 2 cut(s) 218, 613
Tth111I GACNNNGTC 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.