Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003925

Physical Location & Seq

Genomic Coordinates Forward (+)

39492258 .. 39492860

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1277900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCGGCTTCCGAATCGAACCATGTCGACGAGCTCAGCCGCTGCAAGAACCATAATATTCGATCGCCCGGACCATTACTCCGTGGGCCTGTTCGGGCAGGGCCACCCGACGATCCGTCATCCGGTCCGTACGTCCTGGTGTTTCGCGACCCAAAAGCTTGGGCGAACGCGTACAGAGCCTGCGAGTCCAAGATCGTCGAGCAGTGCGAGGCCGGTGCCAGGATCGCGTGCGCCGTTAGCGCATCGGAAAAGTGTAAGCCCCCGTGGTGGCGAGCTATGATTGGCCAGAAAGTCACAGACTTGAAGCAGAGGGAACAGTGCGAGGAGAGAGAAATGGAGGGGTGTTTGACGGCGGCGAAAGAGAAGTGCGGCGGGTTCGCGAAGGAAAAGTTCTTGAAACCCTTCAGAGAAGCGAGGATTGCAGGGGTGAATGTGAAGCAGGTTGAGAGATTGGTCTGCTGGGGGACTCTGGCGGATCCGAGTACGTGGCTCAACTTGATTGGATTGGAAAAATTGGGGGTTTTGGGTTCAGCGAATTATAGGGCTGGTGAATTGTTTGGTTCGGATAGTGAGGTTGATCGTGTTTTGGCGGTGGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

21.92

Weight (kDa)

8.36

Isoelectric Point (pI)

32.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63390
fragaria_vesca	FvH4_2g22890 FvH4_2g22890 FvH4_2g22890
malus_domestica	MD03G1257200.v1.1 MD11G1277900.v1.1
prunus_persica	Prupe.1G517900_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1
pyrus_communis	pycom03g20390 pycom11g24570
rosa_chinensis	RchiOBHm_Chr6g0289821
rosa_laevigata	RLG00000012265
rosa_multiflora	Rmu_co8501753.1_g000001 Rmu_sc0000062.1_g000022 Rmu_sc0000616.1_g000017 Rmu_sc0002638.1_g000015 Rmu_sc0011921.1_g000014
rosa_roxburghii	Rroxscaffold_7G00177530
rosa_rugosa	Rorug06G0207200
rosa_samantha	Rh1CG355400 Rh3BG119600 Rh4CG249200 Rh6AG318700 Rh6BG325900 Rh6DG317200
rosa_wichuraiana	Rw2G018340 Rw4G013870 Rw5G021300 Rw6G027490 Rw7G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	430
AccB1I	GGYRCC	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	4 cut(s)	147, 170, 227, 380
AciI	CCGC	7 cut(s)	5, 40, 353, 369, 372, 473, 590
AclWI	GGATC	4 cut(s)	107, 230, 470, 483
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	597
AcuI	CTGAAG	1 cut(s)	388
AfaI	GTAC	3 cut(s)	131, 173, 484
AfiI	CCNNNNNNNGG	3 cut(s)	122, 219, 267
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	2 cut(s)	304, 397
AhdI	GACNNNNNGTC	1 cut(s)	115
AjnI	CCWGG	2 cut(s)	135, 218
AluBI	AGCT	3 cut(s)	34, 158, 275
AluI	AGCT	3 cut(s)	34, 158, 275
Alw21I	GWGCWC	1 cut(s)	36
AlwI	GGATC	4 cut(s)	107, 230, 470, 483
AlwNI	CAGNNNCTG	2 cut(s)	42, 180
AoxI	GGCC	4 cut(s)	86, 101, 210, 283
ApeKI	GCWGC	1 cut(s)	42
ApoI	RAATTY	1 cut(s)	597
Asp700I	GAANNNNTTC	1 cut(s)	401
AspLEI	GCGC	2 cut(s)	233, 242
AspS9I	GGNCC	4 cut(s)	71, 86, 101, 125
AsuC2I	CCSGG	1 cut(s)	69
AsuHPI	GGTGA	2 cut(s)	439, 560
AvaII	GGWCC	2 cut(s)	71, 125
BalI	TGGCCA	1 cut(s)	285
BamHI	GGATCC	1 cut(s)	475
BanI	GGYRCC	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	29
BceAI	ACGGC	2 cut(s)	218, 366
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BciT130I	CCWGG	2 cut(s)	137, 220
BcnI	CCSGG	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	430
BisI	GCNGC	5 cut(s)	6, 40, 43, 354, 370
BlpI	GCTNAGC	1 cut(s)	35
BlsI	GCNGC	5 cut(s)	7, 41, 44, 355, 371
Bme1390I	CCNGG	3 cut(s)	69, 137, 220
Bme18I	GGWCC	2 cut(s)	71, 125
BmeRI	GACNNNNNGTC	1 cut(s)	115
BmgT120I	GGNCC	4 cut(s)	71, 86, 101, 125
BmiI	GGNNCC	2 cut(s)	217, 477
BmrFI	CCNGG	3 cut(s)	69, 137, 220
BmsI	GCATC	1 cut(s)	251
Bpu1102I	GCTNAGC	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	69
BsaAI	YACGTR	1 cut(s)	486
BsaJI	CCNNGG	2 cut(s)	82, 263
BsaWI	WCCGGW	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 219, 267
Bse118I	RCCGGY	1 cut(s)	212
BseBI	CCWGG	2 cut(s)	137, 220
BseDI	CCNNGG	2 cut(s)	82, 263
BseGI	GGATG	1 cut(s)	119
BseLI	CCNNNNNNNGG	3 cut(s)	122, 219, 267
BseMII	CTCAG	1 cut(s)	49
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	29
BseYI	CCCAGC	1 cut(s)	459
Bsh1236I	CGCG	4 cut(s)	147, 170, 227, 380
Bsh1285I	CGRYCG	1 cut(s)	65
BshFI	GGCC	4 cut(s)	88, 103, 212, 285
BshNI	GGYRCC	1 cut(s)	215
BsiEI	CGRYCG	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	3 cut(s)	69, 123, 213
BsiWI	CGTACG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	3 cut(s)	122, 219, 267
BsmFI	GGGAC	1 cut(s)	478
BsnI	GGCC	4 cut(s)	88, 103, 212, 285
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	6 cut(s)	62, 112, 192, 222, 475, 577
Bsp1720I	GCTNAGC	1 cut(s)	35
Bsp68I	TCGCGA	2 cut(s)	147, 380
BspACI	CCGC	7 cut(s)	5, 40, 353, 369, 372, 473, 590
BspANI	GGCC	4 cut(s)	88, 103, 212, 285
BspCNI	CTCAG	1 cut(s)	48
BspFNI	CGCG	4 cut(s)	147, 170, 227, 380
BspLI	GGNNCC	2 cut(s)	217, 477
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	4 cut(s)	107, 230, 470, 483
BspT107I	GGYRCC	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	2 cut(s)	82, 263
BssMI	GATC	6 cut(s)	62, 112, 192, 222, 475, 577
Bst2UI	CCWGG	2 cut(s)	137, 220
Bst4CI	ACNGT	1 cut(s)	318
BstBAI	YACGTR	1 cut(s)	486
BstC8I	GCNNGC	3 cut(s)	181, 229, 273
BstDEI	CTNAG	1 cut(s)	35
BstDSI	CCRYGG	2 cut(s)	82, 263
BstF5I	GGATG	1 cut(s)	119
BstFNI	CGCG	4 cut(s)	147, 170, 227, 380
BstHHI	GCGC	2 cut(s)	233, 242
BstKTI	GATC	6 cut(s)	65, 115, 195, 225, 478, 580
BstMBI	GATC	6 cut(s)	62, 112, 192, 222, 475, 577
BstMCI	CGRYCG	1 cut(s)	65
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 224, 237, 239, 419
BstNI	CCWGG	2 cut(s)	137, 220
BstSCI	CCNGG	3 cut(s)	67, 135, 218
BstUI	CGCG	4 cut(s)	147, 170, 227, 380
BstV1I	GCAGC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	475
BstXI	CCANNNNNNTGG	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	475
BsuRI	GGCC	4 cut(s)	88, 103, 212, 285
BtgI	CCRYGG	2 cut(s)	82, 263
BtsCI	GGATG	1 cut(s)	119
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	2 cut(s)	209, 323
BtuMI	TCGCGA	2 cut(s)	147, 380
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	3 cut(s)	181, 229, 273
CaiI	CAGNNNCTG	2 cut(s)	42, 180
CfoI	GCGC	2 cut(s)	233, 242
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	4 cut(s)	71, 86, 101, 125
CpoI	CGGWCCG	1 cut(s)	125
Csp6I	GTAC	3 cut(s)	130, 172, 483
CspI	CGGWCCG	1 cut(s)	125
CviAII	CATG	1 cut(s)	23
CviQI	GTAC	3 cut(s)	130, 172, 483
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	6 cut(s)	64, 114, 194, 224, 477, 579
DpnII	GATC	6 cut(s)	62, 112, 192, 222, 475, 577
DriI	GACNNNNNGTC	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	283
Eam1105I	GACNNNNNGTC	1 cut(s)	115
EciI	GGCGGA	1 cut(s)	488
Ecl136II	GAGCTC	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	36
Eco47I	GGWCC	2 cut(s)	71, 125
Eco53kI	GAGCTC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	388
EcoICRI	GAGCTC	1 cut(s)	34
EcoRII	CCWGG	2 cut(s)	135, 218
EcoT38I	GRGCYC	1 cut(s)	36
FaeI	CATG	1 cut(s)	26
FaiI	YATR	4 cut(s)	24, 54, 278, 540
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	1 cut(s)	22
FauI	CCCGC	1 cut(s)	365
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	5 cut(s)	6, 40, 43, 354, 370
FokI	GGATG	1 cut(s)	106
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	5 cut(s)	6, 40, 43, 354, 370
GlaI	GCGC	2 cut(s)	232, 241
GluI	GCNGC	5 cut(s)	6, 40, 43, 354, 370
GsaI	CCCAGC	1 cut(s)	463
HaeIII	GGCC	4 cut(s)	88, 103, 212, 285
HapII	CCGG	3 cut(s)	69, 123, 213
HhaI	GCGC	2 cut(s)	233, 242
Hin1II	CATG	1 cut(s)	26
Hin6I	GCGC	2 cut(s)	231, 240
HinP1I	GCGC	2 cut(s)	231, 240
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	156
HinfI	GANTC	3 cut(s)	14, 185, 466
HpaII	CCGG	3 cut(s)	69, 123, 213
HphI	GGTGA	2 cut(s)	439, 560
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	5 cut(s)	13, 247, 407, 480, 565
Hpy188III	TCNNGA	3 cut(s)	146, 379, 394
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	3 cut(s)	32, 113, 200
HpyAV	CCTTC	2 cut(s)	376, 412
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4IV	ACGT	2 cut(s)	132, 485
HpyCH4V	TGCA	2 cut(s)	45, 422
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 224, 237, 239, 419
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	2 cut(s)	132, 485
Hsp92II	CATG	1 cut(s)	26
HspAI	GCGC	2 cut(s)	231, 240
Kzo9I	GATC	6 cut(s)	62, 112, 192, 222, 475, 577
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	1 cut(s)	251
MaeII	ACGT	2 cut(s)	132, 485
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	6 cut(s)	64, 114, 194, 224, 477, 579
MboI	GATC	6 cut(s)	62, 112, 192, 222, 475, 577
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	1 cut(s)	36
MlsI	TGGCCA	1 cut(s)	285
MluCI	AATT	4 cut(s)	512, 535, 551, 597
MluI	ACGCGT	1 cut(s)	168
MluNI	TGGCCA	1 cut(s)	285
MlyI	GAGTC	2 cut(s)	194, 460
MnlI	CCTC	6 cut(s)	202, 303, 316, 331, 408, 565
Mox20I	TGGCCA	1 cut(s)	285
MroXI	GAANNNNTTC	1 cut(s)	401
MscI	TGGCCA	1 cut(s)	285
Msp20I	TGGCCA	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	42
MspI	CCGG	3 cut(s)	69, 123, 213
MspR9I	CCNGG	3 cut(s)	69, 137, 220
MvaI	CCWGG	2 cut(s)	137, 220
MvnI	CGCG	4 cut(s)	147, 170, 227, 380
MwoI	GCNNNNNNNGC	5 cut(s)	176, 224, 237, 239, 419
NciI	CCSGG	1 cut(s)	69
NdeII	GATC	6 cut(s)	62, 112, 192, 222, 475, 577
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	2 cut(s)	217, 477
NmuCI	GTSAC	1 cut(s)	292
NruI	TCGCGA	2 cut(s)	147, 380
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 231
PdmI	GAANNNNTTC	1 cut(s)	401
PfeI	GAWTC	1 cut(s)	14
Pfl23II	CGTACG	1 cut(s)	129
PkrI	GCNGC	5 cut(s)	7, 41, 44, 355, 371
Ple19I	CGATCG	1 cut(s)	65
PleI	GAGTC	2 cut(s)	193, 460
PpsI	GAGTC	2 cut(s)	193, 460
Ppu21I	YACGTR	1 cut(s)	486
Psp124BI	GAGCTC	1 cut(s)	36
Psp6I	CCWGG	2 cut(s)	135, 218
PspFI	CCCAGC	1 cut(s)	459
PspGI	CCWGG	2 cut(s)	135, 218
PspLI	CGTACG	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	217, 477
PspPI	GGNCC	4 cut(s)	71, 86, 101, 125
PstNI	CAGNNNCTG	2 cut(s)	42, 180
PsuI	RGATCY	1 cut(s)	475
PvuI	CGATCG	1 cut(s)	65
RruI	TCGCGA	2 cut(s)	147, 380
RsaI	GTAC	3 cut(s)	131, 173, 484
RsaNI	GTAC	3 cut(s)	130, 172, 483
Rsr2I	CGGWCCG	1 cut(s)	125
RsrII	CGGWCCG	1 cut(s)	125
SacI	GAGCTC	1 cut(s)	36
SalI	GTCGAC	1 cut(s)	26
SatI	GCNGC	5 cut(s)	6, 40, 43, 354, 370
Sau3AI	GATC	6 cut(s)	62, 112, 192, 222, 475, 577
Sau96I	GGNCC	4 cut(s)	71, 86, 101, 125
SchI	GAGTC	2 cut(s)	194, 460
ScrFI	CCNGG	3 cut(s)	69, 137, 220
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	7 cut(s)	36, 135, 160, 277, 444, 488, 576
SfaNI	GCATC	1 cut(s)	251
SinI	GGWCC	2 cut(s)	71, 125
Sse9I	AATT	4 cut(s)	512, 535, 551, 597
SsiI	CCGC	7 cut(s)	5, 40, 353, 369, 372, 473, 590
SspI	AATATT	1 cut(s)	58
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	3 cut(s)	67, 135, 218
TaaI	ACNGT	1 cut(s)	318
TaiI	ACGT	2 cut(s)	135, 488
TaqI	TCGA	4 cut(s)	17, 27, 61, 198
TasI	AATT	4 cut(s)	512, 535, 551, 597
TauI	GCSGC	4 cut(s)	8, 42, 356, 372
TfiI	GAWTC	1 cut(s)	14
TscAI	CASTG	2 cut(s)	209, 323
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	1 cut(s)	42
Tsp45I	GTSAC	1 cut(s)	292
TspGWI	ACGGA	3 cut(s)	71, 105, 117
TspRI	CASTG	2 cut(s)	209, 323
VpaK11BI	GGWCC	2 cut(s)	71, 125
XapI	RAATTY	1 cut(s)	597
XmiI	GTMKAC	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.