Rh4CG249200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0003925
Physical Location & Seq
Forward (+)
49880862 .. 49881077
216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG249200.1

Sequence Viewer

Length: 216 bp
ATGGACGCCACTGTCTCCCCAGCCCCAATACCCGATCTGAACCAGTCGTCCGGCCCATACGTGCTGGCATTCCGTGACCCGAAAACCTGGGCCAAAGCCTACAGAGAGTGCGAGTCCAATATCCTACACCAATGCGAGGTCGGGTCGAGAATTGGGTGCGCCATCATCGCATCAAGCAAGTGTAAGCCGCCGTGGTGGCGGTTTCTGATTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.88

Weight (kDa)

8.45

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 11
AciI CCGC 2 cut(s) 188, 199
AcyI GRCGYC 1 cut(s) 6
AfiI CCNNNNNNNGG 1 cut(s) 136
AjnI CCWGG 1 cut(s) 86
AloI GAACNNNNNNTCC 2 cut(s) 32, 64
Alw26I GTCTC 1 cut(s) 19
AoxI GGCC 2 cut(s) 52, 90
AspLEI GCGC 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 53, 90
BccI CCATC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 175
BciT130I CCWGG 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 19
BfmI CTRYAG 1 cut(s) 100
BglI GCCNNNNNGGC 1 cut(s) 196
BisI GCNGC 1 cut(s) 188
BlsI GCNGC 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 88
BmgT120I GGNCC 2 cut(s) 53, 90
BmrFI CCNGG 1 cut(s) 88
BmsI GCATC 1 cut(s) 179
BsaAI YACGTR 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 2 cut(s) 87, 191
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 43
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 2 cut(s) 87, 191
BseLI CCNNNNNNNGG 1 cut(s) 136
BseNI ACTGG 1 cut(s) 43
BseYI CCCAGC 1 cut(s) 19
BshFI GGCC 2 cut(s) 54, 92
BsiSI CCGG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 1 cut(s) 19
BsmI GAATGC 1 cut(s) 68
BsnI GGCC 2 cut(s) 54, 92
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 2 cut(s) 188, 199
BspANI GGCC 2 cut(s) 54, 92
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 87, 191
BssMI GATC 1 cut(s) 34
BssNI GRCGYC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 13
BstACI GRCGYC 1 cut(s) 6
BstBAI YACGTR 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 191
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 2 cut(s) 167, 196
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 100
BsuRI GGCC 2 cut(s) 54, 92
BtgI CCRYGG 1 cut(s) 191
BtgZI GCGATG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 9
Cac8I GCNNGC 1 cut(s) 66
CfoI GCGC 1 cut(s) 161
Cfr13I GGNCC 2 cut(s) 53, 90
CseI GACGC 1 cut(s) 14
CviJI RGCY 5 cut(s) 23, 54, 92, 98, 187
CviKI_1 RGCY 5 cut(s) 23, 54, 92, 98, 187
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 86
FaiI YATR 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 188
GlaI GCGC 1 cut(s) 160
GluI GCNGC 1 cut(s) 188
GsaI CCCAGC 1 cut(s) 23
HaeIII GGCC 2 cut(s) 54, 92
HapII CCGG 1 cut(s) 51
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 161
Hin1I GRCGYC 1 cut(s) 6
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 51
Hpy188I TCNGA 2 cut(s) 39, 207
Hpy188III TCNNGA 1 cut(s) 147
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 1 cut(s) 60
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 196
HpySE526I ACGT 1 cut(s) 60
Hsp92I GRCGYC 1 cut(s) 6
HspAI GCGC 1 cut(s) 159
Kzo9I GATC 1 cut(s) 34
LpnPI CCDG 6 cut(s) 33, 50, 56, 64, 73, 100
LweI GCATC 1 cut(s) 179
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 74
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MluCI AATT 1 cut(s) 150
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 1 cut(s) 130
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 88
Mva1269I GAATGC 1 cut(s) 68
MvaI CCWGG 1 cut(s) 88
MwoI GCNNNNNNNGC 2 cut(s) 167, 196
NdeII GATC 1 cut(s) 34
NmuCI GTSAC 1 cut(s) 74
PctI GAATGC 1 cut(s) 68
PkrI GCNGC 1 cut(s) 189
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Ppu21I YACGTR 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 86
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 1 cut(s) 86
PspPI GGNCC 2 cut(s) 53, 90
SatI GCNGC 1 cut(s) 188
Sau3AI GATC 1 cut(s) 34
Sau96I GGNCC 2 cut(s) 53, 90
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 88
SetI ASST 3 cut(s) 63, 89, 141
SfaNI GCATC 1 cut(s) 179
SfcI CTRYAG 1 cut(s) 100
Sse9I AATT 1 cut(s) 150
SsiI CCGC 2 cut(s) 188, 199
StyD4I CCNGG 1 cut(s) 86
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 1 cut(s) 63
TaqI TCGA 1 cut(s) 146
TasI AATT 1 cut(s) 150
TauI GCSGC 1 cut(s) 190
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 74
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.