Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0003925

Physical Location & Seq

Genomic Coordinates Forward (+)

34444596 .. 34445330

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1257200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCGGCTTCGGAATCGAACCATATCGACGAGCATTCAGCCGCTGCAACAACCATACAATTCGACCGTCCGGTCCCATTACTCCGCGGACCGGTTCCGGCAAGCCCAACCGACGACCCGTCCTCCGGTCCGTACGTCCTGGCGTTTCGAGACCCAAAAGCTTGGGCAAACGCGTACAGAGCCTGCAAGTCCAAGATGGTGGAGCAGTGCGTGGCCGGCGCAAGGATCGGATGCGCCATCAGCGGATCGGAGAAGTGTAAGCCCCCGTGGTGGCGAGCTTTGATTGGTCAGAAAGCGCCGGACTTCAAAGAGAGGGAGCAGTGCGAGGAGAGAGAAATGGAGGGTTGTTTGACGGCGGCAAAAGAGAAGTGCGGCGGGTTTGCGAAGGAGAAGTGCTTGAAGCCCTTCAGAGAAGCGAGGATTGCAGGCGTGAATGTGAAACGGGCTGAGAGATTGGTGTGCTGGGGGACTGTGGCGGATCGGAGTACGTGGGTCAATTTGATTGGATTGGAAAAATTAGGGATTTCGGGTTCAACGACGAATTATAGGGCTGGTGAGTTGTTTGGTTCGGATAGTGAGGTTGATGGAGTTTTGGGCGGTGAGAATTTGGCACTGAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

22.42

Weight (kDa)

8.05

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63390
fragaria_vesca	FvH4_2g22890 FvH4_2g22890 FvH4_2g22890
malus_domestica	MD03G1257200.v1.1 MD11G1277900.v1.1
prunus_persica	Prupe.1G517900_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1
pyrus_communis	pycom03g20390 pycom11g24570
rosa_chinensis	RchiOBHm_Chr6g0289821
rosa_laevigata	RLG00000012265
rosa_multiflora	Rmu_co8501753.1_g000001 Rmu_sc0000062.1_g000022 Rmu_sc0000616.1_g000017 Rmu_sc0002638.1_g000015 Rmu_sc0011921.1_g000014
rosa_roxburghii	Rroxscaffold_7G00177530
rosa_rugosa	Rorug06G0207200
rosa_samantha	Rh1CG355400 Rh3BG119600 Rh4CG249200 Rh6AG318700 Rh6BG325900 Rh6DG317200
rosa_wichuraiana	Rw2G018340 Rw4G013870 Rw5G021300 Rw6G027490 Rw7G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AccII	CGCG	2 cut(s)	87, 173
AclWI	GGATC	3 cut(s)	233, 253, 486
AcoI	YGGCCR	1 cut(s)	213
AcsI	RAATTY	1 cut(s)	604
AcuI	CTGAAG	1 cut(s)	391
AfaI	GTAC	3 cut(s)	134, 176, 487
AfiI	CCNNNNNNNGG	4 cut(s)	91, 125, 222, 270
AflIII	ACRYGT	1 cut(s)	171
AgeI	ACCGGT	1 cut(s)	91
AgsI	TTSAA	3 cut(s)	307, 400, 534
AhdI	GACNNNNNGTC	1 cut(s)	118
AjnI	CCWGG	1 cut(s)	138
AloI	GAACNNNNNNTCC	2 cut(s)	514, 546
AluBI	AGCT	2 cut(s)	161, 278
AluI	AGCT	2 cut(s)	161, 278
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	3 cut(s)	233, 253, 486
AlwNI	CAGNNNCTG	2 cut(s)	44, 183
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	1 cut(s)	604
AsiGI	ACCGGT	1 cut(s)	91
Asp700I	GAANNNNTTC	1 cut(s)	404
AspLEI	GCGC	3 cut(s)	221, 236, 298
AspS9I	GGNCC	3 cut(s)	73, 89, 128
AsuHPI	GGTGA	2 cut(s)	566, 611
AvaII	GGWCC	3 cut(s)	73, 89, 128
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	3 cut(s)	190, 245, 578
BceAI	ACGGC	1 cut(s)	369
BciT130I	CCWGG	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	144
BfoI	RGCGCY	1 cut(s)	299
BisI	GCNGC	5 cut(s)	6, 42, 45, 357, 373
BlsI	GCNGC	5 cut(s)	7, 43, 46, 358, 374
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	3 cut(s)	73, 89, 128
BmeRI	GACNNNNNGTC	1 cut(s)	118
BmgT120I	GGNCC	3 cut(s)	73, 89, 128
BmiI	GGNNCC	2 cut(s)	75, 96
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	221
BsaAI	YACGTR	1 cut(s)	489
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	85, 266
BsaWI	WCCGGW	3 cut(s)	70, 91, 125
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	4 cut(s)	91, 125, 222, 270
Bse118I	RCCGGY	2 cut(s)	91, 215
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	2 cut(s)	85, 266
BseGI	GGATG	1 cut(s)	236
BseLI	CCNNNNNNNGG	4 cut(s)	91, 125, 222, 270
BseMII	CTCAG	1 cut(s)	438
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	31
BseYI	CCCAGC	1 cut(s)	462
Bsh1236I	CGCG	2 cut(s)	87, 173
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	1 cut(s)	215
BshTI	ACCGGT	1 cut(s)	91
BsiEI	CGRYCG	1 cut(s)	67
BsiSI	CCGG	6 cut(s)	71, 92, 98, 126, 216, 299
BsiWI	CGTACG	1 cut(s)	132
BslFI	GGGAC	2 cut(s)	59, 481
BslI	CCNNNNNNNGG	4 cut(s)	91, 125, 222, 270
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	2 cut(s)	59, 481
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	215
Bso31I	GGTCTC	1 cut(s)	144
Bsp143I	GATC	3 cut(s)	225, 245, 478
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	1 cut(s)	439
BspFNI	CGCG	2 cut(s)	87, 173
BspLI	GGNNCC	2 cut(s)	75, 96
BspPI	GGATC	3 cut(s)	233, 253, 486
BspTNI	GGTCTC	1 cut(s)	144
BsrFI	RCCGGY	2 cut(s)	91, 215
BssAI	RCCGGY	2 cut(s)	91, 215
BssECI	CCNNGG	2 cut(s)	85, 266
BssMI	GATC	3 cut(s)	225, 245, 478
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	2 cut(s)	68, 472
BstBAI	YACGTR	1 cut(s)	489
BstC8I	GCNNGC	5 cut(s)	103, 184, 217, 276, 427
BstDEI	CTNAG	1 cut(s)	447
BstDSI	CCRYGG	2 cut(s)	85, 266
BstF5I	GGATG	1 cut(s)	236
BstFNI	CGCG	2 cut(s)	87, 173
BstH2I	RGCGCY	1 cut(s)	299
BstHHI	GCGC	3 cut(s)	221, 236, 298
BstKTI	GATC	3 cut(s)	228, 248, 481
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	3 cut(s)	225, 245, 478
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 216, 240, 422
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	138
BstUI	CGCG	2 cut(s)	87, 173
BstV1I	GCAGC	1 cut(s)	31
BstXI	CCANNNNNNTGG	2 cut(s)	162, 199
BsuRI	GGCC	1 cut(s)	215
BtgI	CCRYGG	2 cut(s)	85, 266
BtsCI	GGATG	1 cut(s)	236
BtsI	GCAGTG	2 cut(s)	212, 326
BtsIMutI	CAGTG	3 cut(s)	212, 326, 611
Cac8I	GCNNGC	5 cut(s)	103, 184, 217, 276, 427
CaiI	CAGNNNCTG	2 cut(s)	44, 183
CfoI	GCGC	3 cut(s)	221, 236, 298
Cfr10I	RCCGGY	2 cut(s)	91, 215
Cfr13I	GGNCC	3 cut(s)	73, 89, 128
Cfr42I	CCGCGG	1 cut(s)	88
CpoI	CGGWCCG	2 cut(s)	89, 128
Csp6I	GTAC	3 cut(s)	133, 175, 486
CspAI	ACCGGT	1 cut(s)	91
CspI	CGGWCCG	2 cut(s)	89, 128
CviQI	GTAC	3 cut(s)	133, 175, 486
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	3 cut(s)	227, 247, 480
DpnII	GATC	3 cut(s)	225, 245, 478
DrdI	GACNNNNNNGTC	1 cut(s)	71
DriI	GACNNNNNGTC	1 cut(s)	118
DseDI	GACNNNNNNGTC	1 cut(s)	71
EaeI	YGGCCR	1 cut(s)	213
Eam1105I	GACNNNNNGTC	1 cut(s)	118
EciI	GGCGGA	1 cut(s)	491
Eco31I	GGTCTC	1 cut(s)	144
Eco47I	GGWCC	3 cut(s)	73, 89, 128
Eco57I	CTGAAG	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	138
FaiI	YATR	3 cut(s)	24, 56, 546
FaqI	GGGAC	2 cut(s)	59, 481
FauI	CCCGC	1 cut(s)	368
Fnu4HI	GCNGC	5 cut(s)	6, 42, 45, 357, 373
FokI	GGATG	1 cut(s)	243
Fsp4HI	GCNGC	5 cut(s)	6, 42, 45, 357, 373
GlaI	GCGC	3 cut(s)	220, 235, 297
GluI	GCNGC	5 cut(s)	6, 42, 45, 357, 373
GsaI	CCCAGC	1 cut(s)	466
HaeII	RGCGCY	1 cut(s)	299
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	6 cut(s)	71, 92, 98, 126, 216, 299
HhaI	GCGC	3 cut(s)	221, 236, 298
Hin6I	GCGC	3 cut(s)	219, 234, 296
HinP1I	GCGC	3 cut(s)	219, 234, 296
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	6 cut(s)	71, 92, 98, 126, 216, 299
HphI	GGTGA	2 cut(s)	566, 611
Hpy188I	TCNGA	7 cut(s)	13, 230, 250, 291, 410, 483, 571
Hpy188III	TCNNGA	1 cut(s)	149
Hpy99I	CGWCG	3 cut(s)	32, 116, 541
HpyAV	CCTTC	3 cut(s)	379, 415, 610
HpyCH4III	ACNGT	2 cut(s)	68, 472
HpyCH4IV	ACGT	2 cut(s)	135, 488
HpyCH4V	TGCA	3 cut(s)	47, 186, 425
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 216, 240, 422
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	2 cut(s)	135, 488
HspAI	GCGC	3 cut(s)	219, 234, 296
KroI	GCCGGC	1 cut(s)	215
KroNI	GCCGGC	1 cut(s)	217
KspI	CCGCGG	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	225, 245, 478
LmnI	GCTCC	2 cut(s)	202, 316
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	221
MaeII	ACGT	2 cut(s)	135, 488
MalI	GATC	3 cut(s)	227, 247, 480
MboI	GATC	3 cut(s)	225, 245, 478
MluCI	AATT	5 cut(s)	59, 496, 515, 541, 604
MluI	ACGCGT	1 cut(s)	171
MnlI	CCTC	6 cut(s)	133, 306, 319, 334, 411, 571
MroNI	GCCGGC	1 cut(s)	215
MroXI	GAANNNNTTC	1 cut(s)	404
MspA1I	CMGCKG	3 cut(s)	44, 87, 243
MspI	CCGG	6 cut(s)	71, 92, 98, 126, 216, 299
MspR9I	CCNGG	1 cut(s)	140
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	140
MvnI	CGCG	2 cut(s)	87, 173
MwoI	GCNNNNNNNGC	4 cut(s)	179, 216, 240, 422
NaeI	GCCGGC	1 cut(s)	217
NdeII	GATC	3 cut(s)	225, 245, 478
NgoMIV	GCCGGC	1 cut(s)	215
NlaIV	GGNNCC	2 cut(s)	75, 96
PcsI	WCGNNNNNNNCGW	1 cut(s)	533
PctI	GAATGC	1 cut(s)	34
PdiI	GCCGGC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	14
Pfl23II	CGTACG	1 cut(s)	132
PinAI	ACCGGT	1 cut(s)	91
PkrI	GCNGC	5 cut(s)	7, 43, 46, 358, 374
Ppu21I	YACGTR	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	138
PspFI	CCCAGC	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	138
PspLI	CGTACG	1 cut(s)	132
PspN4I	GGNNCC	2 cut(s)	75, 96
PspPI	GGNCC	3 cut(s)	73, 89, 128
PstNI	CAGNNNCTG	2 cut(s)	44, 183
RsaI	GTAC	3 cut(s)	134, 176, 487
RsaNI	GTAC	3 cut(s)	133, 175, 486
Rsr2I	CGGWCCG	2 cut(s)	89, 128
RsrII	CGGWCCG	2 cut(s)	89, 128
SacII	CCGCGG	1 cut(s)	88
SatI	GCNGC	5 cut(s)	6, 42, 45, 357, 373
Sau3AI	GATC	3 cut(s)	225, 245, 478
Sau96I	GGNCC	3 cut(s)	73, 89, 128
ScrFI	CCNGG	1 cut(s)	140
SetI	ASST	6 cut(s)	138, 163, 280, 491, 582, 621
SfaNI	GCATC	1 cut(s)	221
Sfr303I	CCGCGG	1 cut(s)	88
SgrBI	CCGCGG	1 cut(s)	88
SinI	GGWCC	3 cut(s)	73, 89, 128
Sse9I	AATT	5 cut(s)	59, 496, 515, 541, 604
StyD4I	CCNGG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	68, 472
TaiI	ACGT	2 cut(s)	138, 491
TaqI	TCGA	4 cut(s)	17, 27, 63, 148
TasI	AATT	5 cut(s)	59, 496, 515, 541, 604
TauI	GCSGC	4 cut(s)	8, 44, 359, 375
TfiI	GAWTC	1 cut(s)	14
TscAI	CASTG	3 cut(s)	212, 326, 618
TseI	GCWGC	1 cut(s)	44
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	3 cut(s)	212, 326, 618
VpaK11BI	GGWCC	3 cut(s)	73, 89, 128
XapI	RAATTY	1 cut(s)	604
XmnI	GAANNNNTTC	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.