Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000062.1

Orthogroup ID

OG0003925

Physical Location & Seq

Genomic Coordinates Reverse (-)

133921 .. 134791

Gene Structure 871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000062.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgccactgccccccccagccccaatccccgaccagaacccctcgtccggcccatacgtgctgacattccccaacccgaaaacctgggccaaagcctacagagagtacgagtccaatatcctacaccaatgcgaggtcgggtcgagaatcgggtgcgccatcatcgcatcgagcaagtgtaagccgcagtggtggcggtttctgattgggaaaaaagcaccggacttgaagcagaggacggagtgtgaggagagagagacggaggggtgtttggctcctaattgtagggcgggtgggctggttggttgttccagtgaggttgatcgggttttaggtggtggcagtttggaggagaagaaggacgagaaaggtttggaggaggaagatgtggaagacgaggagggcttgaagggatccgaggaggagttggaaaatgaagaatatttgaatcctgatttggaagaggagtcggaagaggaatctgatgaagattccgatgatgatgatgtggaggtggtgggcggtggcggaggggaaaatggaggtggtggtggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

20.07

Weight (kDa)

4.19

Isoelectric Point (pI)

64.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63390
fragaria_vesca	FvH4_2g22890 FvH4_2g22890 FvH4_2g22890
malus_domestica	MD03G1257200.v1.1 MD11G1277900.v1.1
prunus_persica	Prupe.1G517900_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1
pyrus_communis	pycom03g20390 pycom11g24570
rosa_chinensis	RchiOBHm_Chr6g0289821
rosa_laevigata	RLG00000012265
rosa_multiflora	Rmu_co8501753.1_g000001 Rmu_sc0000062.1_g000022 Rmu_sc0000616.1_g000017 Rmu_sc0002638.1_g000015 Rmu_sc0011921.1_g000014
rosa_roxburghii	Rroxscaffold_7G00177530
rosa_rugosa	Rorug06G0207200
rosa_samantha	Rh1CG355400 Rh3BG119600 Rh4CG249200 Rh6AG318700 Rh6BG325900 Rh6DG317200
rosa_wichuraiana	Rw2G018340 Rw4G013870 Rw5G021300 Rw6G027490 Rw7G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	185, 196, 290, 522, 528
AclWI	GGATC	2 cut(s)	408, 421
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	2 cut(s)	47, 133
AgsI	TTSAA	3 cut(s)	229, 409, 448
AjnI	CCWGG	1 cut(s)	83
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AloI	GAACNNNNNNTCC	2 cut(s)	29, 61
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	2 cut(s)	408, 421
AoxI	GGCC	2 cut(s)	49, 87
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	2 cut(s)	50, 87
BamHI	GGATCC	1 cut(s)	413
BbsI	GAAGAC	1 cut(s)	399
BccI	CCATC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	97
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	1 cut(s)	85
BmgT120I	GGNCC	2 cut(s)	50, 87
BmiI	GGNNCC	2 cut(s)	276, 415
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	399
BsaAI	YACGTR	1 cut(s)	58
BsaJI	CCNNGG	2 cut(s)	84, 417
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 133
Bse1I	ACTGG	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	85
BseDI	CCNNGG	2 cut(s)	84, 417
BseLI	CCNNNNNNNGG	2 cut(s)	47, 133
BseNI	ACTGG	1 cut(s)	312
BseRI	GAGGAG	7 cut(s)	263, 365, 392, 413, 434, 437, 479
BseYI	CCCAGC	1 cut(s)	16
BshFI	GGCC	2 cut(s)	51, 89
BsiSI	CCGG	2 cut(s)	48, 221
BslI	CCNNNNNNNGG	2 cut(s)	47, 133
BsmAI	GTCTC	1 cut(s)	251
BsmBI	CGTCTC	1 cut(s)	251
BsnI	GGCC	2 cut(s)	51, 89
Bsp143I	GATC	2 cut(s)	322, 413
BspACI	CCGC	5 cut(s)	185, 196, 290, 522, 528
BspANI	GGCC	2 cut(s)	51, 89
BspLI	GGNNCC	2 cut(s)	276, 415
BspPI	GGATC	2 cut(s)	408, 421
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	2 cut(s)	84, 417
BssMI	GATC	2 cut(s)	322, 413
Bst2UI	CCWGG	1 cut(s)	85
Bst6I	CTCTTC	2 cut(s)	456, 468
BstBAI	YACGTR	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	2 cut(s)	325, 416
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	2 cut(s)	322, 413
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 193
BstNI	CCWGG	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	83
BstSFI	CTRYAG	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	413
BsuRI	GGCC	2 cut(s)	51, 89
BtgZI	GCGATG	1 cut(s)	148
BtsI	GCAGTG	2 cut(s)	5, 194
BtsIMutI	CAGTG	3 cut(s)	5, 194, 319
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	50, 87
Csp6I	GTAC	1 cut(s)	106
CviJI	RGCY	9 cut(s)	20, 51, 89, 95, 184, 275, 298, 405, 555
CviKI_1	RGCY	9 cut(s)	20, 51, 89, 95, 184, 275, 298, 405, 555
CviQI	GTAC	1 cut(s)	106
DpnI	GATC	2 cut(s)	324, 415
DpnII	GATC	2 cut(s)	322, 413
Eam1104I	CTCTTC	2 cut(s)	456, 468
EarI	CTCTTC	2 cut(s)	456, 468
EciI	GGCGGA	1 cut(s)	543
EcoRII	CCWGG	1 cut(s)	83
Esp3I	CGTCTC	1 cut(s)	251
FaiI	YATR	1 cut(s)	55
FauI	CCCGC	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	185
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	185
GsaI	CCCAGC	1 cut(s)	20
HaeIII	GGCC	2 cut(s)	51, 89
HapII	CCGG	2 cut(s)	48, 221
HhaI	GCGC	1 cut(s)	158
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HinfI	GANTC	6 cut(s)	110, 147, 448, 467, 479, 491
HpaII	CCGG	2 cut(s)	48, 221
Hpy188I	TCNGA	5 cut(s)	204, 418, 472, 484, 496
Hpy188III	TCNNGA	2 cut(s)	144, 452
HpyAV	CCTTC	2 cut(s)	352, 403
HpyCH4IV	ACGT	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 193
HpySE526I	ACGT	1 cut(s)	57
HspAI	GCGC	1 cut(s)	156
Kzo9I	GATC	2 cut(s)	322, 413
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	9 cut(s)	30, 47, 61, 70, 97, 234, 284, 325, 465
LweI	GCATC	1 cut(s)	176
MaeII	ACGT	1 cut(s)	57
MalI	GATC	2 cut(s)	324, 415
MboI	GATC	2 cut(s)	322, 413
MboII	GAAGA	7 cut(s)	367, 395, 404, 449, 473, 485, 500
MflI	RGATCY	1 cut(s)	413
MluCI	AATT	1 cut(s)	280
MlyI	GAGTC	2 cut(s)	119, 476
MmeI	TCCRAC	2 cut(s)	408, 450
MspI	CCGG	2 cut(s)	48, 221
MspR9I	CCNGG	1 cut(s)	85
MvaI	CCWGG	1 cut(s)	85
MwoI	GCNNNNNNNGC	2 cut(s)	164, 193
NdeII	GATC	2 cut(s)	322, 413
NlaIV	GGNNCC	2 cut(s)	276, 415
PfeI	GAWTC	4 cut(s)	147, 448, 479, 491
PkrI	GCNGC	1 cut(s)	186
PleI	GAGTC	2 cut(s)	118, 475
PpsI	GAGTC	2 cut(s)	118, 475
Ppu21I	YACGTR	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	83
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	83
PspN4I	GGNNCC	2 cut(s)	276, 415
PspPI	GGNCC	2 cut(s)	50, 87
PsuI	RGATCY	1 cut(s)	413
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	2 cut(s)	322, 413
Sau96I	GGNCC	2 cut(s)	50, 87
SchI	GAGTC	2 cut(s)	119, 476
ScrFI	CCNGG	1 cut(s)	85
SetI	ASST	8 cut(s)	60, 86, 138, 321, 337, 373, 516, 547
SfaNI	GCATC	1 cut(s)	176
SfcI	CTRYAG	1 cut(s)	97
Sse9I	AATT	1 cut(s)	280
SsiI	CCGC	5 cut(s)	185, 196, 290, 522, 528
SspI	AATATT	1 cut(s)	443
StyD4I	CCNGG	1 cut(s)	83
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	143, 170
TasI	AATT	1 cut(s)	280
TauI	GCSGC	1 cut(s)	187
TfiI	GAWTC	4 cut(s)	147, 448, 479, 491
TscAI	CASTG	3 cut(s)	12, 194, 319
TspDTI	ATGAA	2 cut(s)	450, 501
TspGWI	ACGGA	2 cut(s)	254, 275
TspRI	CASTG	3 cut(s)	12, 194, 319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.